--------------------------------------------------------------- 1st crude filtering of sequences at HSSP = 1. the following proteins got kicked out through filtering: --------------------------------------------------------------- sequence unique list for HSSP = 0 >sp|P27008|PPOL_RAT Poly [ADP-ribose] polymerase-1 (EC 2.4.2.30) (PARP-1) (ADPRT) (NAD(+) ADP-ribosyltransferase-1) (Poly[ADP-ribose] synthetase-1) - Rattus norvegicus (Rat). length: 1013 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P29468|PAP_YEAST Poly(A) polymerase (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase) - Saccharomyces cerevisiae (Baker's yeast). length: 568 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P04053|TDT_HUMAN DNA nucleotidylexotransferase (EC 2.7.7.31) (Terminal addition enzyme) (Terminal deoxynucleotidyltransferase) (Terminal transferase) - Homo sapiens (Human). length: 509 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P07193|P53_XENLA Cellular tumor antigen p53 (Tumor suppressor p53) - Xenopus laevis (African clawed frog). length: 363 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q61368 C1D protein - Mus musculus (Mouse). length: 141 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q04589|FGR1_RAT Basic fibroblast growth factor receptor 1 precursor (EC 2.7.1.112) (FGFR-1) (bFGF-R) (MFR) - Rattus norvegicus (Rat). length: 822 number of sequences in cluster: sequences in cluster HSSP-value // >sp|O14682|ENC1_HUMAN Ectoderm-neural cortex-1 protein (ENC-1) (P53-induced protein 10) (Nuclear matrix protein NRP/B) - Homo sapiens (Human). length: 589 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P15348|TOP2_DROME DNA topoisomerase II (EC 5.99.1.3) - Drosophila melanogaster (Fruit fly). length: 1447 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P57761|PCNA_CRIGR Proliferating cell nuclear antigen (PCNA) - Cricetulus griseus (Chinese hamster). length: 261 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P07812|PRGR_CHICK Progesterone receptor (PR) - Gallus gallus (Chicken). length: 786 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q9DFS5 Histone acetyltransferase-1 - Gallus gallus (Chicken). length: 408 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P09884|DPOA_HUMAN DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Homo sapiens (Human). length: 1462 number of sequences in cluster: sequences in cluster HSSP-value // >tr|O88568 Heterogenous nuclear ribonucleoprotein U - Mus musculus (Mouse). length: 798 number of sequences in cluster: sequences in cluster HSSP-value // >sp|O60930|RNH1_HUMAN Ribonuclease H1 (EC 3.1.26.4) (RNase H1) (Ribonuclease H type II) - Homo sapiens (Human). length: 286 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P17153|ANX5_CHICK Annexin A5 (Annexin V) (Lipocortin V) (Endonexin II) (Calphobindin I) (CBP-I) (Placental anticoagulant protein I) (PAP-I) (PP4) (Thromboplastin inhibitor) (Vascular anticoagulant-alpha) (VAC-alpha) (Anchorin CII) - Gallus gallus (Chi length: 321 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P25490|TYY1_HUMAN Transcriptional repressor protein YY1 (Yin and yang 1) (YY-1) (Delta transcription factor) (NF-E1) - Homo sapiens (Human). length: 414 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P10215|UL31_HSV11 Protein UL31 - Herpes simplex virus (type 1 / strain 17). length: 306 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q8VD55 Transcription factor ELYS - Mus musculus (Mouse). length: 2243 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q96A53 Keratin 19 - Homo sapiens (Human). length: 400 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9DBA9|TFH1_MOUSE TFIIH basal transcription factor complex p62 subunit (Basic transcription factor 62 kDa subunit) (BTF2-p62) (General transcription factor IIH polypeptide 1) - Mus musculus (Mouse). length: 547 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9ET64|NSMA_RAT Sphingomyelin phosphodiesterase 2 (EC 3.1.4.12) (Neutral sphingomyelinase) (nSMase) (N-SMase) (Lyso-platelet activating factor- phospholipase C) (Lyso-PAF-PLC) - Rattus norvegicus (Rat). length: 422 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P49135|XPB_MOUSE TFIIH basal transcription factor complex helicase XPB subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B co length: 783 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9ULX6|NA95_HUMAN Neighbor of A-kinase anchoring protein 95 (Homologous to AKAP95 protein) (HA95) (Helicase A-binding protein 95) (HAP95) (HRIHFB2018) - Homo sapiens (Human). length: 646 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q14469|HES1_HUMAN Transcription factor HES-1 (Hairy and enhancer of split 1) (Hairy- like) (HHL) (Hairy homolog) - Homo sapiens (Human). length: 280 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P11940|PAB1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) - Homo sapiens (Human). length: 636 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9P0U4|CGBP_HUMAN CpG binding protein (Protein containing PHD finger and CXXC domain 1) - Homo sapiens (Human). length: 656 number of sequences in cluster: sequences in cluster HSSP-value // >sp|O96019|B53A_HUMAN 53 kDa BRG1-associated factor A (Actin-related protein Baf53a) (ArpNbeta) - Homo sapiens (Human). length: 429 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9IB84|PS11_CARAU Proteasome subunit beta type 1-A (EC 3.4.25.1) (20S proteasome beta 6 subunit A) (B6-A) - Carassius auratus (Goldfish). length: 238 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P10036|PIT1_BOVIN Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1) - Bos taurus (Bovine). length: 291 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q9HD42 Charged multivesicular body protein 1/chromatin modifying protein 1 (Procollagen (Type III) N-endopeptidase) - Homo sapiens (Human). length: 196 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q9QWC0 Cytokeratin D, P45 (Fragments) - Rattus sp. length: 28 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9Y265|RUV1_HUMAN RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associ length: 456 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q92722 Retinoblastoma 1 - Homo sapiens (Human). length: 92 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P38936|CDNA_HUMAN Cyclin-dependent kinase inhibitor 1 (p21) (CDK-interacting protein 1) (Melanoma differentiation associated protein 6) (MDA-6) - Homo sapiens (Human). length: 164 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P19548|REV_HV1S1 REV protein (Anti-repression transactivator protein) (ART/TRS) - Human immunodeficiency virus type 1 (SF162 isolate) (HIV-1). length: 116 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q9UPG3 Nuclear mitotic apparatus protein (Fragment) - Homo sapiens (Human). length: 173 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P06876|MYB_MOUSE Myb proto-oncogene protein (C-myb) - Mus musculus (Mouse). length: 636 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P25233|NECD_MOUSE Necdin - Mus musculus (Mouse). length: 325 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q8AZ04 P10 - Bombyx mori nuclear polyhedrosis virus (BmNPV). length: 70 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P13292|US02_HSV2H Protein US2 - Herpes simplex virus (type 2 / strain HG52). length: 291 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P11762|LEG1_RAT Galectin-1 (Beta-galactoside-binding lectin L-14-I) (Lactose-binding lectin 1) (S-Lac lectin 1) (Galaptin) (14 kDa lectin) (RL 14.5) - Rattus norvegicus (Rat). length: 134 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P08129|PP1A_HUMAN Serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit (EC 3.1.3.16) (PP-1A) - Homo sapiens (Human), Mus musculus (Mouse), Rattus norvegicus (Rat), and Oryctolagus cuniculus (Rabbit). length: 330 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P03237|PYHD_NPVBM Polyhedrin (Major occlusion protein) - Bombyx mori nuclear polyhedrosis virus (BmNPV). length: 244 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q13951|PEBB_HUMAN Core-binding factor, beta subunit (CBF-beta) (Polyomavirus enhancer binding protein 2 beta subunit) (PEBP2-beta) (PEA2-beta) (SL3-3 enhancer factor 1 beta subunit) (SL3/AKV core-binding factor beta subunit) - Homo sapiens (Human). length: 182 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P54252|MJD1_HUMAN Machado-Joseph disease protein 1 (Ataxin-3) (Spinocerebellar ataxia type 3 protein) - Homo sapiens (Human). length: 376 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P03129|VE7_HPV16 E7 protein - Human papillomavirus type 16. length: 98 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q9UMS4 Nuclear matrix protein NMP200 - Homo sapiens (Human). length: 504 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q07440|BFL1_MOUSE Bcl-2-related protein A1 (BFL-1 protein) (Hemopoietic-specific early response protein) (A1-A) - Mus musculus (Mouse). length: 172 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q62158|RFP_MOUSE Zinc-finger protein RFP (Ret finger protein) (Tripartite motif protein 27) - Mus musculus (Mouse). length: 522 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P24528|MGMT_RAT Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O- methylguanine-DNA methyltransferase) - Rattus norvegicus (Rat). length: 208 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q12824|SNF5_HUMAN SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily B member 1 (Integrase interactor 1 protein) (hSNF5) (BAF47) - Homo sapiens (Human). length: 385 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P18405|S5A1_HUMAN 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (EC 1.3.99.5) (Steroid 5-alpha-reductase 1) (SR type 1) (S5AR) - Homo sapiens (Human). length: 259 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q00910|S212_RAT Solute carrier family 21 member 2 (Prostaglandin transporter) (PGT) (Matrin F/G) - Rattus norvegicus (Rat). length: 643 number of sequences in cluster: sequences in cluster HSSP-value // >tr|Q96FV9 Nuclear matrix protein p84 - Homo sapiens (Human). length: 657 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P02518|HS27_DROME Heat shock protein 27 - Drosophila melanogaster (Fruit fly). length: 213 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P03070|TALA_SV40 Large T antigen - Simian virus 40 (SV40). length: 708 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P09119|CDC6_YEAST Cell division control protein 6 - Saccharomyces cerevisiae (Baker's yeast). length: 513 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P52927|HMGC_MOUSE High mobility group protein HMGI-C (High mobility group AT-hook 2) - Mus musculus (Mouse). length: 108 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P19552|TAT_HV1S3 TAT protein (Transactivating regulatory protein) - Human immunodeficiency virus type 1 (SF33 isolate) (HIV-1). length: 101 number of sequences in cluster: sequences in cluster HSSP-value // >sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] - Homo sapiens (Human). length: 345 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P15655|FGF2_MOUSE Heparin-binding growth factor 2 precursor (HBGF-2) (Basic fibroblast growth factor) (BFGF) (Prostatropin) - Mus musculus (Mouse). length: 154 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P03126|VE6_HPV16 E6 protein - Human papillomavirus type 16. length: 158 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A) (RF-A) (Replication factor-A protein 2) - Homo sapiens (Human). length: 270 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P17073|RS3_MOUSE 40S ribosomal protein S3 - Mus musculus (Mouse), and Rattus norvegicus (Rat). length: 243 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P23025|XPA_HUMAN DNA-repair protein complementing XP-A cells (Xeroderma pigmentosum group A complementing protein) - Homo sapiens (Human). length: 273 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q05315|LPPL_HUMAN Eosinophil lysophospholipase (EC 3.1.1.5) (Charcot-Leyden crystal protein) (Lysolecithin acylhydrolase) (CLC) (Galactin-10) - Homo sapiens (Human). length: 141 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q14805|MC33_HUMAN Metaphase chromosomal protein 1 (33 kDa metaphase chromosomal protein) - Homo sapiens (Human). length: 290 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q9HAN9|NMA1_HUMAN Nicotinamide mononucleotide adenylyltransferase 1 (EC 2.7.7.1) (NMN adenylyltransferase 1) - Homo sapiens (Human). length: 279 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q14149|Y136_HUMAN Hypothetical protein KIAA0136 (Fragment) - Homo sapiens (Human). length: 950 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P21980|TGM2_HUMAN Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13) (Tissue transglutaminase) (TGase C) (TGC) (TG(C)) (Tranglutaminase 2) (TGase-H) - Homo sapiens (Human). length: 687 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P80318|TCPG_MOUSE T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) - Mus musculus (Mouse). length: 545 number of sequences in cluster: sequences in cluster HSSP-value // >sp|O35892|SP10_MOUSE Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear dot-associated Sp100 protein) - Mus musculus (Mouse). length: 482 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P80020|ILBP_RAT Gastrotropin (GT) (Ileal lipid-binding protein) (ILBP) (Intestinal 15 kDa protein) (I-15P) (14 kDa bile acid binding protein) (I-BABP) - Rattus norvegicus (Rat). length: 127 number of sequences in cluster: sequences in cluster HSSP-value // >sp|Q12306|SMT3_YEAST Ubiquitin-like protein SMT3 precursor - Saccharomyces cerevisiae (Baker's yeast). length: 101 number of sequences in cluster: sequences in cluster HSSP-value // >sp|P32807|HDF1_YEAST High affinity DNA-binding factor subunit 1 (Ku70 homolog) - Saccharomyces cerevisiae (Baker's yeast). length: 602 number of sequences in cluster: sequences in cluster HSSP-value // >nm|UNK_00415|UNK_00415 length: 343 number of sequences in cluster: sequences in cluster HSSP-value // END HSSP = 0