BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= trembl|Q60952|Q60952 Intranuclear protein.
(446 letters)

Database: /home/file.fasta
43 sequences; 17,163 total letters

Searching.done


Results from round 1


                                                     Score     E
Sequences producing significant alignments:          (bits)  Value

trembl|Q60952|Q60952 Intranuclear protein. 470 e-135
swiss|Q9M7J4|MFP1_TOBAC MAR binding filament-like protein 1-1. 31 0.003
trembl|Q9FLH0|Q9FLH0 Nuclear matrix constituent protein 1 (NMCP... 26 0.072
trembl|Q9C2H8|Q9C2H8 Related to ser/arg-related nuclear matrix ... 21 2.4

>trembl|Q60952|Q60952 Intranuclear protein.
Length = 446

Score = 470 bits (1210), Expect = e-135
Identities = 446/446 (100%), Positives = 446/446 (100%)

Query: 1 MRQKQDPAGQLAAGQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAAL 60
         MRQKQDPAGQLAAGQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAAL
Sbjct: 1 MRQKQDPAGQLAAGQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAAL 60

You can download the PSI-BLAST example above and submit it to UniqueProt.

Each alignment starts with a ">" character indicating one of the aligned sequences. The second sequence (query) can be found in a previous line tagged with "Query= ".
Submit one single file that contains all performed alignments in arbitrary order. You can get such a file by using the "-o" option and specifying a filename when running BLAST or PSIBLAST.

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