: strech=5 crowd_predictions=7 gap=45 itr=27	# parameters used for prediction and postprocessing
length=110					# length of sequence
         10        20        30        40	# position number 
1234567890123456789012345678901234567890	# position number 
CPP=9                                           # number of positions predicted to bind a protein   
MQHPPCEPGNCLSLKEKKITEGSGGVCWGGETDASNPAPA	# one letter sequence
----------------------------------------	# "-" for residue position predicted not to bind protein
			                        # "P" for a residue predicted to bind a protein. 
LTACCAAEREANVEQGLAGRLLLCNYERRLVRRCKIAGRG	#
------------------------------PPPPPP-PPP	# here, VRRCKI and GRG are predicted to bind protein.

RAPLGTRPLDVSSFKLKEEGRPPCLKINK
-----------------------------

0
1 M -99                                         # raw svm output per position (without postprocessing). 
2 Q 95						# negative score - unlikely to bind protein and vice versa
3 H -99
4 P -97
5 P -78
6 C -87
7 E -99
8 P -99
9 G -99
10 N 75
11 C -86
12 L -47
13 S 18
14 L 10
15 K 93
16 E -53
17 K -88
18 K -76
19 I -78
20 T -56
21 E -79
22 G -64
23 S -5
24 G -97
25 G 34
26 V 99
27 C -66
28 W 65
29 G -76
30 G 87
31 E 97
32 T 33
33 D -35
34 A -80
35 S -82
36 N 80
37 P -97
38 A -86
39 P -49
40 A -60
41 L -84
42 T -72
43 A 91
44 C -52
45 C -97
46 A -99
47 A -93
48 E 47
49 R -50
50 E -36
51 A -86
52 N 53
53 V -84
54 E 99
55 Q -80
56 G -43
57 L 4
58 A 69
59 G -34
60 R -82
61 L -99
62 L -13
63 L -70
64 C -60
65 N -99
66 Y 12
67 E -87
68 R -45
69 R 97
70 L -84
71 V 49
72 R 81
73 R 88
74 C 57
75 K 59
76 I 90
77 A 37
78 G 56
79 R 98
80 G 93
81 R 45
82 A 8
83 P 94
84 L 57
85 G -95
86 T 52
87 R -97
88 P -85
89 L -99
90 D -87
91 V 81
92 S 1
93 S -74
94 F -99
95 K -88
96 L -97
97 K -90
98 E -99
99 E 6
100 G -99
101 R -49
102 P 29
103 P -97
104 C -88
105 L -99
106 K -99
107 I 95
108 N -63
109 K 43