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Transmembrane helices for yeast (Saccharomyces cerevisiae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN
598YPL270W3in109|ali|phd|phdHtm|82090-12.71183,324,419MKTYVLLYGKLIMTTMILNT
599YOL126C3in64|ali|phd|phdHtm|42360-6.8019,79,202MILLLILFPCIYFLPFCINR
600YHR190W3in18|ali|phd|phdHtm|44480-8.2378,311,439MGKLLQLALHPVEMKAALKL
601YKL188C3in10|ali|phd|phdHtm|85361-6.46140,186,375MISTASAFYQKHRVNLLRSS
602YKL141W3in9|ali|phd|phdHtm|19806-0.47120,157,196MSAMMVKLGLNKSALLLKPS
603YOR103C3in9|ali|phd|phdHtm|13395-11.6670,96,132MTNMAKAPKANTPKVTSTSS
604YDR100W3in6|ali|phd|phdHtm|14389-8.0734,56,106MSVIPPKFFKIANISIGCID
605YDL052C3in5|ali|phd|phdHtm|32322-2.9350,143,211FATTYACYLTRANSFERASE
606YGL054C3in5|ali|phd|phdHtm|13879-7.4524,78,128MGAWLFILAVVVNCINLFGQ
607YBL048W3in4|ali|phd|phdHtm|10399-10.6539,63,93MILFKNLVFLPSILIGYISI
608YBR210W3in4|ali|phd|phdHtm|14279-7.2728,81,132MSGTGLSLFVTGLILNCLNS
609YBL070C3in3|ali|phd|phdHtm|10699-12.3339,62,105MGPVLVWNISDLIGMNFTCL
610YDL027C3in3|ali|phd|phdHtm|42090-10.99153,175,351MFKVPVGLASRTRELMNSVT
611YKL038W3in3|ali|phd|phdHtm|117080-8.45687,933,1023MNELNTVSTNSSDSTKNGGT
612YAL066W3in2|ali|phd|phdHtm|10223-2.0032,57,81MLSLVKRSILHSIPITRHIL
613YCL002C3in2|ali|phd|phdHtm|12623-2.7139,73,100MMVLRQLYYYRSTKHIYQGI
614YGL065C3in2|ali|phd|phdHtm|50320-2.1093,126,488MIEKDKRTIAFIHPDLGIGG
615YGL149W3in2|ali|phd|phdHtm|10153-5.8329,51,98MSINALLYVLSLALLIWTGS
616YGR228W3in2|ali|phd|phdHtm|11449-4.7546,84,108MLIVIFHKAIFSNSSLASST
617YLR205C3in2|ali|phd|phdHtm|27300-0.78123,231,267MRHGFIYRQGILAYYYVFDA
618YNL322C3in2|ali|phd|phdHtm|31390-9.2535,215,313MMRRTLLHSFATLLLSLSLW
619YAL037W3in1|ali|phd|phdHtm|26711-1.2352,174,196MDMEIEDSSPIDDLKLQKLD
620YBR051W3in1|ali|phd|phdHtm|11687-8.0020,45,88MHILFLFIFHCLAFKDLIFF
621YBR128C3in1|ali|phd|phdHtm|34462-6.97195,218,259MHCPICHHRAHVVYCAHCIN
622YCL065W3in1|ali|phd|phdHtm|12219-1.4343,76,115MLKYVVTDIGKMCLYIWPYR
623YCR041W3in1|ali|phd|phdHtm|11067-6.0643,77,110MLKYVVTDIGKMCLYIWPYR
624YDL011C3in1|ali|phd|phdHtm|10797-10.5341,67,105MADKLSSTDAMGCWSPTFCF
625YDL068W3in1|ali|phd|phdHtm|10914-1.6744,86,108MSCSPNFCKVSFLVSNVFPV
626YDR182W3in1|ali|phd|phdHtm|49192-13.9862,411,488MVYRNRSKSVLSTHSKKSDD
627YDR396W3in1|ali|phd|phdHtm|16660-6.90117,140,162MHALNIFPCGLFSYIALLCL
628YDR524C3in1|ali|phd|phdHtm|48211-1.3384,211,374MDFYTTDINKNVVPLFSKGT
629YDR535C3in1|ali|phd|phdHtm|16642-4.1767,115,160MGQMRWNSGTTALISSTERH
630YER067C-A3in1|ali|phd|phdHtm|10721-2.3837,60,83MTQPLICAYRMCFVIDKYHS
631YER165C-A3in1|ali|phd|phdHtm|11890-10.2331,60,104MIVIFCVIVKCEFFCIFTFI
632YFR036W-A3in1|ali|phd|phdHtm|21612-1.5822,129,159MTIVHFVGSLFFFFFFSYIF
633YFR054C3in1|ali|phd|phdHtm|19211-1.0563,91,183MLFAYSGCLAPQCIPDISSF
634YGL024W3in1|ali|phd|phdHtm|11149-4.4142,71,103MFAIICMNSLNCNRNGRISS
635YGR114C3in1|ali|phd|phdHtm|12969-6.8236,68,121MFSSFFGNTCSWVFIFIIIV
636YGR115C3in1|ali|phd|phdHtm|25961-6.0438,75,180MSYISSILSDDRPVICVGCL
637YHR151C3in1|ali|phd|phdHtm|52660-6.8218,155,497MWILIYLFIIWSSLRTWVTA
638YIR020C-A3in1|ali|phd|phdHtm|24450-5.56113,192,224MEGFSFNETLMGVNSHQKVS
639YJL002C3in1|ali|phd|phdHtm|47630-3.6022,85,468MRQVWFSWIVGLFLCFFNVS
640YJL120W3in1|ali|phd|phdHtm|10792-16.3337,59,107MTFATQVGEVRSKDTGSYNW
641YJL183W3in1|ali|phd|phdHtm|42261-6.7854,237,364MAIKPRTKGKTYSSRSVGSQ
642YJR075W3in1|ali|phd|phdHtm|39691-22.5632,187,209MAKTTKRASSFRRLMIFAII
643YKL207W3in1|ali|phd|phdHtm|26034-3.4257,177,219MTINQHLQQLLFNRIDKTTS
644YLR018C3in1|ali|phd|phdHtm|29910-1.6985,127,149MKIQAGQLGLDDNDVPGPLP
645YLR100W3in1|ali|phd|phdHtm|34710-1.29115,179,260MNRKVAIVTGTNSNLGLNIV
646YLR101C3in1|ali|phd|phdHtm|13144-4.9427,61,112MPFLLHVYIYQLICVFYTDI
647YLR227C3in1|ali|phd|phdHtm|49361-6.2155,178,343MNKDVDYQTFKKSLRKEFKK
648YLR322W3in1|ali|phd|phdHtm|10496-9.6531,72,98MRHCIIFIVCISIVEIRTVH
649YLR402W3in1|ali|phd|phdHtm|17191-13.7439,148,171MKLFKNGARAFCILNFPSLF
650YLR458W3in1|ali|phd|phdHtm|12692-12.5049,71,120MSPQTFCILLIFSLSLEKTS
651YML029W3in1|ali|phd|phdHtm|83810-1.14548,577,781MSEYLAQTPCKFTIWSSEID
652YML047W-A3in1|ali|phd|phdHtm|12135-3.7618,59,108MVFVTIIIIINISYNIYNIY
653YML067C3in1|ali|phd|phdHtm|35252-5.1344,305,328MAGLKTFDAFPKTEEQYKKK
654YMR055C3in1|ali|phd|phdHtm|30691-10.13217,246,290MTSIEDLISNPPLLLHSSLS
655YMR071C3in1|ali|phd|phdHtm|16781-8.0442,71,124MALSLGQFINVGGMVKDLKS
656YMR119W-A3in1|ali|phd|phdHtm|12444-4.9059,81,111MRLLVQKVILIYLARYAKSM
657YMR129W3in1|ali|phd|phdHtm|133720-2.86130,165,193MEHRYNVFNDTPRGNHWMGS
658YMR281W3in1|ali|phd|phdHtm|30442-4.6735,237,297MKMLRRTKVNFSKLLYKITK
659YNL172W3in1|ali|phd|phdHtm|174850-5.33557,1262,1398MTSKPSTRNDYLPRETHNGE
660YNL179C3in1|ali|phd|phdHtm|14593-10.3736,69,123MSNCRRLLCRQLSSAYLNYL
661YNL320W3in1|ali|phd|phdHtm|28420-2.5327,109,198MLWKVSKMFLGGLVALTTIS
662YOL046C3in1|ali|phd|phdHtm|22411-1.9667,128,222MSESKFIFLIFNNDSMCKSE
663YOR105W3in1|ali|phd|phdHtm|10890-22.5038,60,82MKKKISKVAALSRNMMLEIR
664YPR109W3in1|ali|phd|phdHtm|29421-2.9651,161,236MDNFESTAEGNLSIGNKRVY
665YLL053C3out80|ali|phd|phdHtm|1529511.3656,87,131MWFPQIIAGMAAGGAASAMT
666YHR016C3out33|ali|phd|phdHtm|468000.7464,103,162MGINNPIPRSLKSETKKAAK
667YFR024C-A3out27|ali|phd|phdHtm|451202.1257,95,153MGINNPIPRSLKSETNFVKP
668YDR047W3unk20|ali|phd|phdHtm|362000.00MGNFPAPKNDLILRAAKGEK
669YAL063C3unk14|ali|phd|phdHtm|1322000.00MSLAHYCLLLAIVTLLGLTN
670YNL324W3out13|ali|phd|phdHtm|131292.3436,82,121MNPRRPYPVIFLCRPSSVAS
671YBR034C3unk10|ali|phd|phdHtm|370000.00HNRNPMETHYLTRANSFERA
672YMR118C3out8|ali|phd|phdHtm|19606-0.59116,157,192MKATIQRVTSVFGVPRASVF
673YDR402C3out6|ali|phd|phdHtm|4899114.0327,49,229MELLKLLCLILFLTLSYVAF
674YGR175C3out6|ali|phd|phdHtm|496515.4838,457,490MSAVNVAPELINADNTITYD
675YBR041W3unk5|ali|phd|phdHtm|623000.00MSPIQVVVFALSRIFLLLFR
676YLR251W3out5|ali|phd|phdHtm|197222.4073,118,171MKLLHLYEASLKRRPKTTNA
677YMR202W3out5|ali|phd|phdHtm|222212.0823,108,196MKFFPLLLLIGVVGYIMNVL
678YOL163W3out5|ali|phd|phdHtm|169434.6436,74,103MIAWSLVATLQCKMTGKSSF
679YCR032W3unk4|ali|phd|phdHtm|2167000.00MNSIINAASKVLRLQDDVKK
680YDL072C3out4|ali|phd|phdHtm|203767.5027,63,127MSLYYTLVFAILVVEIFMFS
681YJR044C3out4|ali|phd|phdHtm|140101.5242,96,122MMEFKVSPLTKIISLSGFLA
682YMR052C-A3out4|ali|phd|phdHtm|121797.8134,74,103MILWGGSGGYLVIILYTIMP
683YNL087W3out4|ali|phd|phdHtm|11789010.83129,296,347MSPNSSKTRTDQISSMPGIN
684YAR003W3unk3|ali|phd|phdHtm|426000.00MNILLQDPFAVLKEHPEKLT
685YBR266C3out3|ali|phd|phdHtm|15009-0.0157,89,122MCSRFSSTSLKCLLCSQNRH
686YDR089W3out3|ali|phd|phdHtm|869111.16791,832,855MKFEDRILNKSIPEWKFYNI
687YKL065C3out3|ali|phd|phdHtm|206959.4725,65,125MSLYFTTLFLLLTVEVVMLF
688YML059C3out3|ali|phd|phdHtm|16799012.2474,96,121MRSMNCTTNNTNNTGQNTKN
689YOL060C3out3|ali|phd|phdHtm|706111.2480,167,197MSFLPLRSRSRSGAPHWVYI
690YOR086C3out3|ali|phd|phdHtm|1186707.36138,298,352MAKEDTGVTAPKKPETAQVA
691YAL051W3out2|ali|phd|phdHtm|1062000.82416,477,771MVENSTQKAPHAGNDDNSST
692YBR110W3out2|ali|phd|phdHtm|449434.6027,122,161MFLEIPRWLLALIILYLSIP
693YBR161W3out2|ali|phd|phdHtm|37602-0.9129,219,293MKKELKILIIANIALLISII
694YDL058W3unk2|ali|phd|phdHtm|1790000.00MDIIQGLIQQPKIQSVDETI
695YDR329C3out2|ali|phd|phdHtm|441616.7839,156,358MAPNQRSRSLLQRHRGKVLI
696YIR023C-A3out2|ali|phd|phdHtm|107010.0336,65,88MCYYLYYRGVSLVLIVTFLS
697YLR087C3out2|ali|phd|phdHtm|2958909.3350,1944,2670MEAISQLRGVPLTHQKDFSW
num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN
698YML047C3out2|ali|phd|phdHtm|352747.0451,95,244MESSLQKLKFQDIDINLIPT
699YMR040W3out2|ali|phd|phdHtm|1609515.2025,65,123MGVYLAVLFSLLVIEMAILF
700YOR082C3out2|ali|phd|phdHtm|1139616.6724,69,91MLVVYMCIWVLYLLLFLFLF
701YOR245C3out2|ali|phd|phdHtm|41800-0.3391,209,359MSGTFNDIRRRKKEEGSPTA
702YPL057C3out2|ali|phd|phdHtm|38202-0.8825,212,290MRKELKYLICFNILLLLSII
703YPL060W3out2|ali|phd|phdHtm|41302-0.14139,353,384MRAFPRVLPFRHQRSYNNIL
704YPL094C3out2|ali|phd|phdHtm|2839118.38178,215,237MVAEQTQENMSAVGPGSNAG
705YPL227C3out2|ali|phd|phdHtm|33402-0.4631,244,325MRALRFLIENRNTVFFTLLV
706YPR034W3out2|ali|phd|phdHtm|477303.57151,175,401MTLNRKCVVIHNGSHRTVAG
707YAL027W3unk1|ali|phd|phdHtm|261000.00MAPSIATVKIARDMVLPLRI
708YAL049C3unk1|ali|phd|phdHtm|246000.00MASNQPGKCCFEGVCHDGTP
709YBR070C3out1|ali|phd|phdHtm|2379411.1926,150,184MKTAYLASLVLIVSTAYVIR
710YBR076W3unk1|ali|phd|phdHtm|339000.00MYPIIVDHSKEKPSRTKYSH
711YBR113W3out1|ali|phd|phdHtm|160485.0057,87,136MPLRPCRHHQGFLPKKQWRA
712YBR174C3unk1|ali|phd|phdHtm|104000.00MISTEKSSDAVAMHCPSGDQ
713YBR204C3unk1|ali|phd|phdHtm|375000.00MNMAERAEATKSWSCEPLSG
714YBR277C3out1|ali|phd|phdHtm|133515.4821,96,125MFSSLFLSSALFFFSCLMAS
715YCL005W3out1|ali|phd|phdHtm|254636.1849,90,112MFVVDWSVQLCMGVISPLFR
716YCL041C3out1|ali|phd|phdHtm|164686.6728,74,119MRGASAASKIFFFSIFVVIV
717YCL049C3unk1|ali|phd|phdHtm|312000.00MFSKYLVTASSLFVALTSAA
718YCR013C3unk1|ali|phd|phdHtm|215000.00MGKEKRKKLIYRFQFNSIYF
719YCR093W3out1|ali|phd|phdHtm|2108808.00683,1653,1762MLSATYRDLNTASNLETSKE
720YDL063C3unk1|ali|phd|phdHtm|620000.00MGRSKKRSRASSSRLNPLRK
721YDL158C3out1|ali|phd|phdHtm|102747.0127,59,82MIIFKNIVTLENWFVIYIIR
722YDR027C3unk1|ali|phd|phdHtm|889000.00MSISETPHNKSQGLQKAAGR
723YDR076W3unk1|ali|phd|phdHtm|406000.00MSLGIPLSQLIVESPKPLSS
724YDR124W3unk1|ali|phd|phdHtm|324000.00MRIGMEELRRALALLNGQGY
725YDR125C3unk1|ali|phd|phdHtm|453000.00MLLIKRYLMDPESLRRQIMN
726YDR136C3out1|ali|phd|phdHtm|190808.55127,153,177MYRFCAHAYLLLKYEKYHNQ
727YDR193W3out1|ali|phd|phdHtm|132646.6742,86,132MGALEPNAGAPNADGLAALL
728YDR297W3out1|ali|phd|phdHtm|349737.3970,119,170MNVTSNATAAGSFPLAFGLK
729YDR426C3out1|ali|phd|phdHtm|125272.4247,70,119MYIYIYIYVYAICNTMRDGN
730YDR476C3out1|ali|phd|phdHtm|224010.21134,156,178MWDSLIVSINDTHKLGLEDC
731YDR479C3out1|ali|phd|phdHtm|55400-0.34179,283,307MDSVTNFFWNDTYNAGTPTR
732YDR509W3out1|ali|phd|phdHtm|1159313.5234,57,86MMFTFIFHIFNGFFHCFFKI
733YDR521W3out1|ali|phd|phdHtm|111323.1140,62,88MKGSKSHLVFTLLQVSQLNV
734YDR526C3out1|ali|phd|phdHtm|156666.8539,76,102MPCLLPPTQVPEAPSISANN
735YEL033W3out1|ali|phd|phdHtm|139818.8539,63,93MKKEKKTPTPLPSHHVLFAE
736YEL041W3out1|ali|phd|phdHtm|495707.33127,215,351MKTDRLLINASPETCTKGDA
737YEL067C3out1|ali|phd|phdHtm|195505.6451,118,178MAFTTIRSLTIFSGSSFDMP
738YER019W3out1|ali|phd|phdHtm|47700-0.39146,416,442MYNRKDRDVHERKEDGQSEF
739YER044C3out1|ali|phd|phdHtm|148757.5241,86,108MFSLQDVITTTKTTLAAMPK
740YER072W3out1|ali|phd|phdHtm|129515.2352,80,119MSSAPLLQRTPGKKIALPTR
741YER181C3out1|ali|phd|phdHtm|107505.2333,74,96MLILLRLSEVCVNFVIIIGI
742YFL015C3out1|ali|phd|phdHtm|164131.5235,72,125MLAYTFPSFNFYVNGFFSFL
743YGL041C3out1|ali|phd|phdHtm|1049914.3334,57,86MPDFSNSNLNSFIACLRSLS
744YGL146C3out1|ali|phd|phdHtm|311303.0150,200,293MEKASLNIAQTKEIPLTDRR
745YGL159W3out1|ali|phd|phdHtm|370010.18126,169,356MNNSIITDDEVREFYLNCSS
746YGR004W3out1|ali|phd|phdHtm|4629210.2487,122,204MSEINNENLEPTSSTVAEST
747YGR077C3out1|ali|phd|phdHtm|589101.08182,301,543MFDHDVEYLITALSSETRIQ
748YGR263C3out1|ali|phd|phdHtm|4249014.7467,119,263MAANSGLDSKVEYYRLQENE
749YHL026C3out1|ali|phd|phdHtm|268424.8335,171,215MYHSRVDLITLWAFPHTISG
750YIL040W3out1|ali|phd|phdHtm|1389513.9465,87,114MDATQPQYELSVVTQCLKSA
751YIL100C-A3out1|ali|phd|phdHtm|112898.4645,77,110MLRSAPLALGLEPHPLNNSL
752YIL171W-A3out1|ali|phd|phdHtm|150747.7434,88,129MCLFDQGKAVLVRTVGWPDL
753YJL117W3out1|ali|phd|phdHtm|311727.7991,113,138MAVQQRKKKEGRKSDKNAPS
754YJL175W3out1|ali|phd|phdHtm|170080.5635,96,141MFLTSPFESCIVLSSLIAGL
755YJL220W3out1|ali|phd|phdHtm|150747.7434,88,129MCLFDQGKAVLVRTVGWPDL
756YKL053W3out1|ali|phd|phdHtm|124464.5433,68,97MWLSLYRRKNIAGPLPCVLI
757YKL147C3out1|ali|phd|phdHtm|205656.0886,121,143MSPPCNCRLLLGFLIKWRAT
758YKR040C3out1|ali|phd|phdHtm|1679336.6850,86,127MTSFQAVSFALGCNTLVACY
759YLR040C3out1|ali|phd|phdHtm|224424.0023,126,224MIFAPSFSLIKNILLVSFLI
760YLR112W3out1|ali|phd|phdHtm|1399011.4952,81,103MGGRSAQPRRFSFACRILHP
761YLR171W3out1|ali|phd|phdHtm|129121.3275,97,119MSSSQTLPKYVSIVSTNRWI
762YLR198C3out1|ali|phd|phdHtm|119373.4537,59,94MGYTLFRFIVPFNPYFSSFY
763YLR202C3out1|ali|phd|phdHtm|108797.1436,70,93MPNFHLINICVFYRYYNFFL
764YLR334C3out1|ali|phd|phdHtm|126282.5827,60,83MDNLIIAGILLLIKAMIFCI
765YLR339C3out1|ali|phd|phdHtm|1839416.1158,106,168MVPLAILVGTPKAWKKEVLP
766YLR341W3out1|ali|phd|phdHtm|477717.93263,358,388MFRRGDNSNFNVQNSFFLPL
767YLR411W3out1|ali|phd|phdHtm|241131.0163,177,206MNMGGSSSTAAKKATCKISM
768YML090W3out1|ali|phd|phdHtm|12806-0.4334,71,93MLVFSFLFVVVSINLNALIF
769YMR158W-A3out1|ali|phd|phdHtm|106111.7125,66,90MHHFVPSISLFMASVSFSVF
770YMR254C3out1|ali|phd|phdHtm|10205-0.8818,63,94MVPLILLILLFSKFSTFLRP
771YNL203C3out1|ali|phd|phdHtm|203646.0068,104,200MEPFDFFNSFKHALAVLKLP
772YOL079W3out1|ali|phd|phdHtm|132292.5239,67,96MAMYFPISLLLLLLIRVSSE
773YOL134C3out1|