Transmembrane helices for yeast (Saccharomyces cerevisiae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Saccharomyces cerevisiae

taxonomy: Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae.
Saccharomyces cerevisiae(budding yeast) may be better known as brewers or bakers yeast. They are normally diploid unicellular fungi that reproduce asexually by budding. Most laboratory strains used are, in contrast to wild- type yeasts, stable haploids.
The total number of ORF of Saccharomyces cerevisiae used in this study is 6280.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	410	163	202	6.5	2.6	3.2	24.2	10.6	12.1
2	329	165	142	5.2	2.6	2.3	17.7	8.0	8.9
3	185	67	99	2.9	1.1	1.6	12.5	5.4	6.6
4	117	57	57	1.9	0.9	0.9	9.5	4.3	5.0
5	68	33	32	1.1	0.5	0.5	7.6	3.4	4.1
6	58	32	25	0.9	0.5	0.4	6.6	2.9	3.6
7	70	20	49	1.1	0.3	0.8	5.6	2.4	3.2
8	45	23	21	0.7	0.4	0.3	4.5	2.1	2.4
9	45	20	25	0.7	0.3	0.4	3.8	1.7	2.1
10	68	31	37	1.1	0.5	0.6	3.1	1.4	1.7
11	65	17	48	1.0	0.3	0.8	2.0	0.9	1.1
12	28	20	7	0.4	0.3	0.1	1.0	0.6	0.3
13	15	7	8	0.2	0.1	0.1	0.5	0.3	0.2
14	12	10	2	0.2	0.2	0.0	0.3	0.2	0.1
15	1	1	0	0.0	0.0	0.0	0.1	0.0	0.1
16	3	0	3	0.0	0.0	0.0	0.1	0.0	0.1
17	1	0	1	0.0	0.0	0.0	0.0	0.0	0.0
20	1	1	0	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

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