Transmembrane helices for ureur (Ureaplasma urealyticum)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Ureaplasma urealyticum

taxonomy: Bacteria; Firmicutes; Bacillus/Clostridium group; Mollicutes; Mycoplasmataceae; Ureaplasma
Ureaplasma urealyticum is a wall-less bacteria descended from low G + C Gram positive bacteria. It is a very small colony mycoplasma. It is associated with adverse pregnancy outcome (chorioamnionitis, intrauterine infection, & premature birth).
The total number of ORF of Ureaplasma urealyticum used in this study is 613.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	34	17	16	5.5	2.8	2.6	22.8	13.7	9.0
2	21	13	8	3.4	2.1	1.3	17.3	10.9	6.4
3	16	9	7	2.6	1.5	1.1	13.9	8.8	5.1
4	10	6	4	1.6	1.0	0.7	11.3	7.3	3.9
5	6	3	3	1.0	0.5	0.5	9.6	6.4	3.3
6	10	8	2	1.6	1.3	0.3	8.6	5.9	2.8
7	10	4	6	1.6	0.7	1.0	7.0	4.6	2.4
8	4	2	2	0.7	0.3	0.3	5.4	3.9	1.5
9	15	10	5	2.4	1.6	0.8	4.7	3.6	1.1
10	4	4	0	0.7	0.7	0.0	2.3	2.0	0.3
11	4	2	2	0.7	0.3	0.3	1.6	1.3	0.3
12	4	4	0	0.7	0.7	0.0	1.0	1.0	0.0
13	2	2	0	0.3	0.3	0.0	0.3	0.3	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Mar 20, 2000 Contact CUBIC WWW administrator:
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