--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Treponema pallidum --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 3323280 17 in 4 632 4 0 -4.75 32,77,124,159,189,223,245,283,326,379,401,446,468,500,541,584,627 MKGTRGQLVLRSIALLLIGT LAQLGVLLLTTYIPWLSTAF 2 3322276 12 in 7 443 5 0 -5.39 34,63,119,168,197,244,275,302,331,364,396,439 MSRRKQGRELFNSHVGVVLS RYVYLGLCVMIMVLGVMFGG 3 3322539 12 in 7 455 9 2 -11.09 27,59,95,135,166,211,253,303,345,367,394,435 MIHTHTLSLSFMLFSFFFGA AHARLREKTCTPRGTLPLTD 4 3322808 12 in 3 526 7 0 -7.65 116,153,181,205,265,296,338,376,418,440,472,505 MKSKSSLLKSGLLLSLLTLV LLLLSRDEFAYKALRSIRFC 5 3323255 12 in 2 407 2 0 -2.33 36,58,94,134,156,194,226,257,306,336,359,388 MKIWLKFFVGSCIGALVAYT CTAISAERIGTVRHRAVRFF 6 3322369 12 in 1 510 8 1 -8.89 31,63,107,156,212,243,280,339,374,426,474,498 MQKEKCDFSVSLIPLGIVIS ALIMLCVVASFFKELRAEVT 7 3322404 12 out 3 575 0 0 0.52 49,88,119,151,215,269,291,328,379,435,498,547 MRPMHIGNLTHLTMLVLCLA AASKEEQDMSVEYACGDLAI 8 3322858 11 in 1 495 3 0 -3.04 25,55,101,146,175,228,267,346,406,445,485 MFFSLLSPAAFLFIFFILYW FFFVLSVMTPSGIAPFIYYS 9 3323215 11 in 1 470 2 1 -2.71 42,79,131,164,200,229,262,316,360,394,441 MLHISSCCRGKRLSRCFGPR VVLARHLKTRRWVRNLVANL 10 3322698 11 out 7 451 9 0 9.81 34,83,111,169,206,235,264,327,373,408,434 MGVVEWVGEWMHAVVWSFPM LLFLARQGMRLREEFFAQQE 11 3323324 11 out 6 500 7 0 7.24 71,116,143,197,241,270,297,353,400,436,462 MRGGNRRDPISCNGKMLCVT GNVPVFFQEHLVFPEKMACR 12 3323152 11 out 2 749 3 0 3.86 45,67,123,168,200,259,294,318,340,377,424 MSGEYQSFTLKRARRVYDQY FRLLIGTWTATLFRKPALMC 13 3322478 10 in 32 450 9 2 -12.24 37,91,136,166,197,231,284,326,384,412 MKQGVFAAVFRIRELRARIF GRGKVLPRICSGYLRKDVYE 14 3322791 10 in 17 433 8 0 -8.07 30,65,91,125,159,188,210,359,396,423 MRIRGVSDFDYLLLLTMLAL SSLWTAMIATGLLMSINARQ 15 3322407 10 in 4 593 4 0 -4.41 64,134,169,219,273,368,424,485,537,582 MPRCSSGITRINPMTTLLHP LSLASSVLLIGVHRCKEYSY 16 3322314 10 in 3 469 1 1 -1.23 128,150,183,221,244,271,327,365,398,465 MNTRLPLRVLQCVLVGLLVC NVAGVIGTAIAAGVFISAYG 17 3322486 10 in 3 715 3 1 -3.80 21,55,79,122,155,201,226,254,281,595 MGLLFFSYLFVAVFVFDVFC FMARDMQDDVTVLAIKCLGP 18 3322612 10 in 2 566 5 0 -5.24 64,89,136,328,362,400,462,491,520,543 MLSTNAYSVTAAAACSTCGV GLLEAARRVRVHKDTYVLPE 19 3322849 10 in 2 396 2 2 -2.31 38,61,98,143,184,218,252,297,334,358 MAGSAGFWLLAKLSGGMVCG ALMLRGLRYTLRANCVGREE 20 3322599 10 in 1 400 9 0 -11.21 67,89,126,165,200,260,310,332,356,388 MRRNRARARASHEWDAEKRD LSMHNGIRAMLVRWGRQGAH 21 3323098 10 in 1 888 8 1 -9.00 45,267,296,318,360,388,443,752,785,861 MWGRRMRCMKIPRQLTRRRL VASLTLLPTLLNVVKPRFIT 22 3322295 10 out 3 350 0 2 0.18 35,64,95,128,151,183,210,268,308,332 MHTQSLSPRQFMMKILNGSS DFILVDRLKLYRRELFIPEQ 23 3323364 10 out 2 341 5 2 5.38 33,64,102,134,163,210,239,277,306,336 MESFVRSALAARTLPTLLGV LLCAVYGLFVLLNGLLRGTG