--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Treponema pallidum --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 24 3322983 9 in 13 531 5 2 -5.81 213,253,275,320,342,396,443,498,521 MRDRTQCVAVPTQAFNEILD FKGLIIIAAVALDSVKYLKR 25 3322847 9 in 1 403 1 0 -1.20 40,62,116,201,224,273,302,324,364 MEKQSPAQTISLFVLLALMF IFHDPPAAGVHAQSIHRQGK 26 3323079 9 in 1 593 4 0 -4.59 56,114,144,167,198,246,275,309,352 MSRRDYLRKERLTNKHTSVR RGIEAVGNYALSISRWLARM 27 3322665 9 out 17 384 2 3 2.44 37,74,102,137,173,203,300,336,364 MRPMISIEKNVHQERYSFVF LIINVSGDEKIRREREETVF 28 3322624 9 out 1 363 2 3 2.97 53,107,153,183,221,250,292,316,358 MGLIFFRYDRCYMLSVLSYL RFMILQGLLTIGLLGVLFKL 29 3322712 9 out 1 622 8 0 8.17 348,370,394,416,450,478,507,544,590 MIVPMKKVTLLVLGSEQERS EFSNHVGLMWTGIRYTPFRE 30 3323335 9 out 1 345 2 3 2.61 32,69,97,140,168,199,285,307,333 MTIAGRNKVVAFSIVLSALL FLLNTASVFFIRSVHRVHIW 31 3323366 8 in 35 792 9 0 -10.54 117,153,191,231,411,443,751,774 MQVSFVVHGISCTACVRRIE LSSVSVLCNALRLNQFQSSS 32 3322843 8 in 2 362 6 0 -6.04 46,68,117,202,242,266,308,340 MEEFIFWNLSVIHAVQQAAH RVGLAGGLPFHAPAPTAVRE 33 3323191 8 in 2 241 5 3 -5.16 46,70,106,129,158,187,209,233 MQCKQFFTLYKKELRSLLTS YIFVAIAGIELQCLIVRVRF 34 3322576 8 in 1 377 3 1 -3.66 26,66,92,121,202,245,284,325 MKRVINSCIAVLLGVAVMSA RTRRRHALSVHDTHHRRSRW 35 3322630 8 in 1 469 0 0 -0.52 51,80,102,131,156,237,288,312 MRLVRSRLPLDVRDELVSLL KLLPQRNERHALHRFCRQLT 36 3322869 8 in 1 360 9 1 -11.78 19,47,79,111,150,189,211,245 MSALFSLVAVYVLVCALHKQ ATSTSEAIIRAVEKILQQPQ 37 3322875 8 in 1 495 4 0 -4.69 26,88,279,349,394,416,438,480 MKQRCAAVNLIRVIFMCALR VCIIPALRAGRVRPLDLMRK 38 3322973 8 in 1 344 8 0 -8.51 63,87,144,169,195,224,253,330 MSHITSRRSSRMKAYSYAVE VRFVYAHRCYWHWLNPLPTQ 39 3323235 8 in 1 449 0 0 -0.11 65,188,241,294,319,375,406,439 MNENFEKIQTLLEHKRYVPL VDTTSLFVFFNVARVVLRWP 40 3322433 8 out 9 298 1 3 1.28 36,60,86,116,162,209,247,276 MHALMRLFSDYTLQNVVLGT QRGVLYQLWRRRRVSLLQEE 41 3323018 8 out 7 265 0 1 0.07 33,55,91,113,146,174,202,244 MERSFDALFSQASLFFLAAV SILFGGFEMFEQLLVKLGKA 42 3322587 8 out 2 337 0 0 0.81 25,79,101,153,211,264,291,327 MSSPVMHVWIGMLIGAANVV GCVGAFALAKVCAWGARDAG 43 3322600 8 out 2 316 1 3 1.77 29,53,86,113,166,216,262,297 MNTFYSMVALTLVFSTPILI FGGRGEAPRAIGQPYDRARR 44 3323016 7 in 17 707 4 1 -4.38 36,58,80,133,219,259,311 MAHGKSAFFTTDAFVAISVL IETVGVVRIEESDVDAFVRK 45 3322291 7 in 12 266 0 4 -0.53 29,71,105,148,194,231,255 MLQYAFMRNAFVASFLIALL LVSVVVLMLVIALTQVGRAR 46 3322955 7 in 7 272 2 2 -2.84 41,97,138,160,205,229,261 MPNCRLIHTRARTPLRCSFS AGIVGVAYLLRNSLKTIVHS 47 3323367 7 in 2 238 4 5 -4.39 61,91,126,155,178,207,233 MEKIVNADGSDAICPASAAC IWHMFVIGGSVMHFFSLYLS 48 3322296 7 in 1 597 6 0 -6.88 19,68,108,136,158,188,210 MTIGFAFTIFAYYLAMFCFR IPTDEPQSEYRHGGGVGGAY 49 3322896 7 in 1 287 5 1 -5.54 33,76,107,143,166,232,287 MSAEIKRLLIFFFGVPTILM SLAPSLGTFYIACECFGIAA 50 3323201 7 in 1 362 3 2 -3.50 31,72,104,126,300,329,354 MYVCEVVFKHILVGVLCFFL WIPNAALFFTALILSMRKSA 51 3323296 7 in 1 448 0 0 -0.71 49,204,241,274,361,383,436 MERSWEGIDRGVPVYGMGCT ALVVLSAVWWCGGLCRGASS 52 3322434 7 out 12 367 1 3 1.24 26,73,105,161,207,251,273 MTMEVVLIAVVVSVACALCG ALLLLTAQGVSLAQARLDVS 53 3323164 7 out 6 332 9 2 19.88 37,85,133,159,242,264,317 MLSIVYPSWIRPEIIPSFPY LGGMFALSAYHKRDSVRKAR 54 3322520 7 out 3 546 9 0 9.18 33,55,96,131,176,216,533 MRIEEWCRSRLGEFLLFVLA LFILIAGGVRHMLRCRRGGW 55 3322411 7 out 1 339 0 0 0.57 44,66,101,123,238,291,323 MRTAEYKHAPFLYTGLSAGQ LILRAESWYYYVRRRRYDVQ 56 3322852 7 out 1 302 2 2 2.24 29,87,134,170,228,256,296 MKKVGVRVRACILCALAACA SITSYGIMLIVCTSALVASL 57 3322949 7 out 1 803 5 0 5.03 384,417,443,465,516,543,590 MAYAVSRTSPPGARALNLAL PHQRDSDQQQLVSVAQGSYK 58 3323035 7 out 1 365 0 2 0.43 108,137,210,275,297,319,346 MARASSPLSSMHSPHSLPFS IFTGIVEKLYLGVQHRPGRS