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Transmembrane helices for trepa (Treponema pallidum)
Jinfeng Liu & Burkhard Rost
CUBIC Columbia Univ, Dept Biochem & Mol Biophysics
| num | id | nhtm | top | nali | ali|phd|phdHtm | len1 | riTop | riMod | topD | htmCN | seqN |
| 111 | 3322713 | 3 | in | 8 | |ali|phd|phdHtm| | 140 | 1 | 9 | -1.39 | 65,99,135 | MNFGMFGAAAVLGISAVGSA |
| 112 | 3322283 | 3 | in | 2 | |ali|phd|phdHtm| | 407 | 5 | 3 | -5.48 | 64,90,131 | MLSMLFSAAETAFCALNTLR |
| 113 | 3322792 | 3 | in | 2 | |ali|phd|phdHtm| | 444 | 1 | 0 | -1.37 | 230,323,372 | MDQHTRTRDLVSAFFGRFHF |
| 114 | 3323288 | 3 | in | 2 | |ali|phd|phdHtm| | 323 | 7 | 1 | -7.56 | 29,91,198 | MKHPSVRVCCFAFASCLLCA |
| 115 | 3322330 | 3 | in | 1 | |ali|phd|phdHtm| | 128 | 5 | 4 | -5.46 | 55,90,126 | MLPFYFLSVATNAAIGFILT |
| 116 | 3322445 | 3 | in | 1 | |ali|phd|phdHtm| | 436 | 9 | 0 | -9.43 | 136,158,204 | MSRTPRSFCGHAFHMQSLSQ |
| 117 | 3322549 | 3 | in | 1 | |ali|phd|phdHtm| | 249 | 0 | 2 | -0.08 | 104,168,247 | MEQTQLVTRIEFLSVPLDVV |
| 118 | 3322714 | 3 | in | 1 | |ali|phd|phdHtm| | 273 | 1 | 0 | -1.60 | 77,136,261 | MLLIDVGNSHVVFGIQGENG |
| 119 | 3322867 | 3 | in | 1 | |ali|phd|phdHtm| | 281 | 4 | 3 | -4.80 | 121,159,215 | MWFSLRRIGDLLSWLVGSKG |
| 120 | 3323001 | 3 | in | 1 | |ali|phd|phdHtm| | 202 | 8 | 0 | -8.22 | 31,111,153 | MCRLRRSVAGGGALFLAVLW |
| 121 | 3323104 | 3 | in | 1 | |ali|phd|phdHtm| | 139 | 3 | 9 | -3.26 | 61,100,129 | MHCPLLRHTVVIEWAAPSMV |
| 122 | 3323145 | 3 | in | 1 | |ali|phd|phdHtm| | 425 | 0 | 2 | -0.05 | 133,158,237 | MATIPPCTMEQSLCAMGSLS |
| 123 | 3323190 | 3 | in | 1 | |ali|phd|phdHtm| | 493 | 1 | 1 | -1.70 | 27,343,484 | MSRKHHIPCTVMILNIMMSV |
| 124 | 3323303 | 3 | in | 1 | |ali|phd|phdHtm| | 387 | 0 | 0 | -0.29 | 80,119,213 | MSYRTRSSLDRKRDYICPAC |
| 125 | 3322767 | 3 | out | 6 | |ali|phd|phdHtm| | 614 | 2 | 1 | 2.73 | 38,116,308 | MSRKNANQKIVWPLTTKLIG |
| 126 | 3323271 | 3 | out | 4 | |ali|phd|phdHtm| | 665 | 9 | 0 | 11.76 | 476,547,644 | MCMGSFSYCKESCTLSSFCS |
| 127 | 3322708 | 3 | out | 3 | |ali|phd|phdHtm| | 232 | 9 | 1 | 9.10 | 167,197,219 | MLGESREEAERIVRAAREEA |
| 128 | 3322813 | 3 | out | 2 | |ali|phd|phdHtm| | 384 | 2 | 1 | 2.93 | 95,131,295 | MRFRARVSQSTAKCVVFTGG |
| 129 | 3322415 | 3 | out | 1 | |ali|phd|phdHtm| | 245 | 3 | 2 | 3.14 | 42,83,229 | MQPPRPACQDEGTHGKEVCM |
| 130 | 3322442 | 3 | out | 1 | |ali|phd|phdHtm| | 280 | 1 | 2 | 1.81 | 41,80,249 | MQGQVLKKVLKKYVHIGMCT |
| 131 | 3322493 | 3 | out | 1 | |ali|phd|phdHtm| | 435 | 4 | 0 | 4.27 | 113,278,421 | MRAPDMNGAVGMVLRHGVPV |
| 132 | 3322770 | 3 | out | 1 | |ali|phd|phdHtm| | 162 | 8 | 0 | 8.60 | 35,64,127 | MIRALFSLFRSLHANTHPAD |
| 133 | 3322944 | 3 | out | 1 | |ali|phd|phdHtm| | 440 | 4 | 0 | 4.27 | 33,55,422 | MGRMRKVACAFRKLWCRFVV |
| 134 | 3322989 | 3 | out | 1 | |ali|phd|phdHtm| | 105 | 9 | 9 | 13.01 | 31,64,98 | MNEFLSLLSRAQTILLMLRL |
| 135 | 3323073 | 3 | out | 1 | |ali|phd|phdHtm| | 313 | 1 | 0 | 1.61 | 61,96,178 | MGFLGYIYNCIRIHVSLAPI |
| 136 | 3323169 | 3 | out | 1 | |ali|phd|phdHtm| | 1533 | 4 | 0 | 4.43 | 773,842,1108 | MNARLCFFSRLIFCVLSICA |
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