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Transmembrane helices for trepa (Treponema pallidum)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

181 3322977 1 in 15 |ali|phd|phdHtm| 352 4 3 -4.56 101 MNVLGIETSCDETAVAIVKD

182 3322505 1 in 10 |ali|phd|phdHtm| 59 9 9 -9.97 50 MLKFAKFRRECVAEFRRVVW

183 3323080 1 in 9 |ali|phd|phdHtm| 398 9 3 -20.19 31 MRNKVRVLAVVAALAAACAV

184 3323325 1 in 5 |ali|phd|phdHtm| 799 7 1 -7.43 36 MERSPLPRIIALTFGTLLFV

185 3323025 1 in 4 |ali|phd|phdHtm| 238 9 5 -17.65 38 MARKRRAPRGAAQGWLTTYS

186 3322377 1 in 3 |ali|phd|phdHtm| 331 9 4 -19.33 36 MRKRGLQVHARVRPVLNIGI

187 3322733 1 in 3 |ali|phd|phdHtm| 176 9 7 -15.71 42 MIQTLVLRDTPRLESCRRGG

188 3322780 1 in 3 |ali|phd|phdHtm| 344 1 5 -1.27 38 MSIRTFSFTPSVRLRRIVLW

189 3322422 1 in 2 |ali|phd|phdHtm| 371 9 3 -14.18 40 MSVYCRSSKQTVREPCRPVP

190 3322449 1 in 2 |ali|phd|phdHtm| 235 9 5 -17.21 42 MFARWRRYSYLARREARRNA

191 3322859 1 in 2 |ali|phd|phdHtm| 206 8 7 -8.77 32 MRRNSRTMAKIVALLALILL

192 3322919 1 in 2 |ali|phd|phdHtm| 779 9 1 -18.00 289 MRARVRRSRQSACTSSGRRF

193 3322920 1 in 2 |ali|phd|phdHtm| 476 1 2 -1.56 54 MGVSCLTRAASFSNQCRFPF

194 3323246 1 in 2 |ali|phd|phdHtm| 512 1 2 -2.00 77 MVLTLCVCALLFCLRRKYVH

195 3322280 1 in 1 |ali|phd|phdHtm| 88 8 9 -8.00 83 MDDARYAEWSASLVQLPDTH

196 3322297 1 in 1 |ali|phd|phdHtm| 310 4 4 -4.00 172 MSQEIGIKLADGSFFPLFTA

197 3322307 1 in 1 |ali|phd|phdHtm| 342 6 3 -6.52 72 MYALCAACTRSRSAPGRRRP

198 3322398 1 in 1 |ali|phd|phdHtm| 69 9 9 -17.02 65 MEPRMSGSNLRFPYSRAYGG

199 3322537 1 in 1 |ali|phd|phdHtm| 448 9 3 -12.67 36 MCYYRYVQVHSIWRRFCALG

200 3322568 1 in 1 |ali|phd|phdHtm| 534 4 2 -4.00 163 MLALDEGGSGRLNADYLIDV

201 3322573 1 in 1 |ali|phd|phdHtm| 270 9 5 -14.18 41 MHSDAQGCFRRVNMEQKRIL

202 3322610 1 in 1 |ali|phd|phdHtm| 230 9 4 -19.25 34 MRRRRRFLTLCACAVHLLPL

203 3322866 1 in 1 |ali|phd|phdHtm| 406 1 2 -1.86 46 MMTTVRVILQRCARGICSNK

204 3323029 1 in 1 |ali|phd|phdHtm| 226 8 5 -8.51 57 MGAERVGRAPGVNAKRAVQT

205 3323044 1 in 1 |ali|phd|phdHtm| 398 6 3 -6.18 29 MKVLDMGRHGLFLLLIFFML

206 3323094 1 in 1 |ali|phd|phdHtm| 377 9 3 -13.00 42 MKEIARHCTFSPMKIKEKKG

207 3323250 1 in 1 |ali|phd|phdHtm| 246 8 5 -8.50 34 MKSFYFGRGALASTGGCVVL

208 3323286 1 in 1 |ali|phd|phdHtm| 320 5 3 -5.43 32 MTTAQKLLHRKSTIAMVVGI

209 3323314 1 in 1 |ali|phd|phdHtm| 1033 8 1 -8.00 488 MPSAQHLSEFARELKTLGNE

210 3323323 1 out 9 |ali|phd|phdHtm| 598 0 2 0.22 36 MYSLRVLFRRLLRGLNAVRL

211 3322311 1 out 6 |ali|phd|phdHtm| 351 4 3 4.36 203 MMESSTILQRRALFNEAGDI

212 3322375 1 out 4 |ali|phd|phdHtm| 328 2 3 2.22 36 MRIPKWTPATWSVVAGCIGG

213 3323175 1 out 4 |ali|phd|phdHtm| 546 2 2 2.64 248 MRPARCVLYTGRAPCGSKTS

214 3323065 1 out 2 |ali|phd|phdHtm| 652 1 2 1.74 57 MSAPTSFRVHPWDASLPCTG

215 3322275 1 out 1 |ali|phd|phdHtm| 707 9 2 14.00 490 MRKCAMRIMRRLMLFLMCLC

216 3322277 1 out 1 |ali|phd|phdHtm| 236 4 5 4.00 87 MKRFALIGLGDFGLSMLKEL

217 3322292 1 out 1 |ali|phd|phdHtm| 92 4 9 4.00 87 MDLGQRVVRVIPLAPLPVRV

218 3322327 1 out 1 |ali|phd|phdHtm| 191 0 6 0.62 133 MLPTAQRRLRGYIRACAPYG

219 3322473 1 out 1 |ali|phd|phdHtm| 147 9 8 13.00 139 MRIYLRVVLPLSLALNSYGV

220 3322534 1 out 1 |ali|phd|phdHtm| 594 9 1 16.00 234 MPIRFRCLLRRRSFSLGCTV

221 3322565 1 out 1 |ali|phd|phdHtm| 239 1 6 1.91 42 MHEQRRGIVRVDRFLELHRR

222 3322611 1 out 1 |ali|phd|phdHtm| 405 9 3 12.00 117 MPDIGELLKTTRERKHLSLE

223 3322690 1 out 1 |ali|phd|phdHtm| 177 3 6 3.14 121 MKVYIHPAEQHTQRTSYLLC

224 3322750 1 out 1 |ali|phd|phdHtm| 487 6 2 6.00 28 MNNVHKTFIALAAGLVLLLA

225 3322757 1 out 1 |ali|phd|phdHtm| 290 9 5 12.30 47 MSQVLTVLHALSSPPWICLL

226 3322760 1 out 1 |ali|phd|phdHtm| 469 9 3 14.00 36 MAHLTFLLGCATMGGMSAYM

227 3322786 1 out 1 |ali|phd|phdHtm| 329 7 4 7.78 55 MTESGLPVLCFFRVSMEFLL

228 3322825 1 out 1 |ali|phd|phdHtm| 341 2 3 2.29 306 MAVERDVADVFVYAKLSGLC

229 3322936 1 out 1 |ali|phd|phdHtm| 274 2 5 2.00 173 MDLGMTMAGFLRGLWCVVGT

230 3323013 1 unk 1 |ali|phd|phdHtm| 190 0 6 0.00 20 MLVMSITFSFVAVALLVYFY

231 3323024 1 out 1 |ali|phd|phdHtm| 182 1 9 1.67 52 MAEKDSIGDIADDFEEQLVA

232 3323056 1 out 1 |ali|phd|phdHtm| 344 6 3 6.91 73 MVSASSFYVPAAVKKNFNAL

233 3323197 1 out 1 |ali|phd|phdHtm| 316 2 3 2.57 32 MRSVDSRSSVTRWVCLTSVI

234 3323234 1 unk 1 |ali|phd|phdHtm| 444 0 3 0.00 21 MSSAVIVFFVVMLALSSIML

235 3323327 1 out 1 |ali|phd|phdHtm| 222 9 5 12.00 31 MCYLAAVFLTLCTKSAMAGD

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
181	3322977	1	in	15	\|ali\|phd\|phdHtm\|	352	4	3	-4.56	101	MNVLGIETSCDETAVAIVKD
182	3322505	1	in	10	\|ali\|phd\|phdHtm\|	59	9	9	-9.97	50	MLKFAKFRRECVAEFRRVVW
183	3323080	1	in	9	\|ali\|phd\|phdHtm\|	398	9	3	-20.19	31	MRNKVRVLAVVAALAAACAV
184	3323325	1	in	5	\|ali\|phd\|phdHtm\|	799	7	1	-7.43	36	MERSPLPRIIALTFGTLLFV
185	3323025	1	in	4	\|ali\|phd\|phdHtm\|	238	9	5	-17.65	38	MARKRRAPRGAAQGWLTTYS
186	3322377	1	in	3	\|ali\|phd\|phdHtm\|	331	9	4	-19.33	36	MRKRGLQVHARVRPVLNIGI
187	3322733	1	in	3	\|ali\|phd\|phdHtm\|	176	9	7	-15.71	42	MIQTLVLRDTPRLESCRRGG
188	3322780	1	in	3	\|ali\|phd\|phdHtm\|	344	1	5	-1.27	38	MSIRTFSFTPSVRLRRIVLW
189	3322422	1	in	2	\|ali\|phd\|phdHtm\|	371	9	3	-14.18	40	MSVYCRSSKQTVREPCRPVP
190	3322449	1	in	2	\|ali\|phd\|phdHtm\|	235	9	5	-17.21	42	MFARWRRYSYLARREARRNA
191	3322859	1	in	2	\|ali\|phd\|phdHtm\|	206	8	7	-8.77	32	MRRNSRTMAKIVALLALILL
192	3322919	1	in	2	\|ali\|phd\|phdHtm\|	779	9	1	-18.00	289	MRARVRRSRQSACTSSGRRF
193	3322920	1	in	2	\|ali\|phd\|phdHtm\|	476	1	2	-1.56	54	MGVSCLTRAASFSNQCRFPF
194	3323246	1	in	2	\|ali\|phd\|phdHtm\|	512	1	2	-2.00	77	MVLTLCVCALLFCLRRKYVH
195	3322280	1	in	1	\|ali\|phd\|phdHtm\|	88	8	9	-8.00	83	MDDARYAEWSASLVQLPDTH
196	3322297	1	in	1	\|ali\|phd\|phdHtm\|	310	4	4	-4.00	172	MSQEIGIKLADGSFFPLFTA
197	3322307	1	in	1	\|ali\|phd\|phdHtm\|	342	6	3	-6.52	72	MYALCAACTRSRSAPGRRRP
198	3322398	1	in	1	\|ali\|phd\|phdHtm\|	69	9	9	-17.02	65	MEPRMSGSNLRFPYSRAYGG
199	3322537	1	in	1	\|ali\|phd\|phdHtm\|	448	9	3	-12.67	36	MCYYRYVQVHSIWRRFCALG
200	3322568	1	in	1	\|ali\|phd\|phdHtm\|	534	4	2	-4.00	163	MLALDEGGSGRLNADYLIDV
201	3322573	1	in	1	\|ali\|phd\|phdHtm\|	270	9	5	-14.18	41	MHSDAQGCFRRVNMEQKRIL
202	3322610	1	in	1	\|ali\|phd\|phdHtm\|	230	9	4	-19.25	34	MRRRRRFLTLCACAVHLLPL
203	3322866	1	in	1	\|ali\|phd\|phdHtm\|	406	1	2	-1.86	46	MMTTVRVILQRCARGICSNK
204	3323029	1	in	1	\|ali\|phd\|phdHtm\|	226	8	5	-8.51	57	MGAERVGRAPGVNAKRAVQT
205	3323044	1	in	1	\|ali\|phd\|phdHtm\|	398	6	3	-6.18	29	MKVLDMGRHGLFLLLIFFML
206	3323094	1	in	1	\|ali\|phd\|phdHtm\|	377	9	3	-13.00	42	MKEIARHCTFSPMKIKEKKG
207	3323250	1	in	1	\|ali\|phd\|phdHtm\|	246	8	5	-8.50	34	MKSFYFGRGALASTGGCVVL
208	3323286	1	in	1	\|ali\|phd\|phdHtm\|	320	5	3	-5.43	32	MTTAQKLLHRKSTIAMVVGI
209	3323314	1	in	1	\|ali\|phd\|phdHtm\|	1033	8	1	-8.00	488	MPSAQHLSEFARELKTLGNE
210	3323323	1	out	9	\|ali\|phd\|phdHtm\|	598	0	2	0.22	36	MYSLRVLFRRLLRGLNAVRL
211	3322311	1	out	6	\|ali\|phd\|phdHtm\|	351	4	3	4.36	203	MMESSTILQRRALFNEAGDI
212	3322375	1	out	4	\|ali\|phd\|phdHtm\|	328	2	3	2.22	36	MRIPKWTPATWSVVAGCIGG
213	3323175	1	out	4	\|ali\|phd\|phdHtm\|	546	2	2	2.64	248	MRPARCVLYTGRAPCGSKTS
214	3323065	1	out	2	\|ali\|phd\|phdHtm\|	652	1	2	1.74	57	MSAPTSFRVHPWDASLPCTG
215	3322275	1	out	1	\|ali\|phd\|phdHtm\|	707	9	2	14.00	490	MRKCAMRIMRRLMLFLMCLC
216	3322277	1	out	1	\|ali\|phd\|phdHtm\|	236	4	5	4.00	87	MKRFALIGLGDFGLSMLKEL
217	3322292	1	out	1	\|ali\|phd\|phdHtm\|	92	4	9	4.00	87	MDLGQRVVRVIPLAPLPVRV
218	3322327	1	out	1	\|ali\|phd\|phdHtm\|	191	0	6	0.62	133	MLPTAQRRLRGYIRACAPYG
219	3322473	1	out	1	\|ali\|phd\|phdHtm\|	147	9	8	13.00	139	MRIYLRVVLPLSLALNSYGV
220	3322534	1	out	1	\|ali\|phd\|phdHtm\|	594	9	1	16.00	234	MPIRFRCLLRRRSFSLGCTV
221	3322565	1	out	1	\|ali\|phd\|phdHtm\|	239	1	6	1.91	42	MHEQRRGIVRVDRFLELHRR
222	3322611	1	out	1	\|ali\|phd\|phdHtm\|	405	9	3	12.00	117	MPDIGELLKTTRERKHLSLE
223	3322690	1	out	1	\|ali\|phd\|phdHtm\|	177	3	6	3.14	121	MKVYIHPAEQHTQRTSYLLC
224	3322750	1	out	1	\|ali\|phd\|phdHtm\|	487	6	2	6.00	28	MNNVHKTFIALAAGLVLLLA
225	3322757	1	out	1	\|ali\|phd\|phdHtm\|	290	9	5	12.30	47	MSQVLTVLHALSSPPWICLL
226	3322760	1	out	1	\|ali\|phd\|phdHtm\|	469	9	3	14.00	36	MAHLTFLLGCATMGGMSAYM
227	3322786	1	out	1	\|ali\|phd\|phdHtm\|	329	7	4	7.78	55	MTESGLPVLCFFRVSMEFLL
228	3322825	1	out	1	\|ali\|phd\|phdHtm\|	341	2	3	2.29	306	MAVERDVADVFVYAKLSGLC
229	3322936	1	out	1	\|ali\|phd\|phdHtm\|	274	2	5	2.00	173	MDLGMTMAGFLRGLWCVVGT
230	3323013	1	unk	1	\|ali\|phd\|phdHtm\|	190	0	6	0.00	20	MLVMSITFSFVAVALLVYFY
231	3323024	1	out	1	\|ali\|phd\|phdHtm\|	182	1	9	1.67	52	MAEKDSIGDIADDFEEQLVA
232	3323056	1	out	1	\|ali\|phd\|phdHtm\|	344	6	3	6.91	73	MVSASSFYVPAAVKKNFNAL
233	3323197	1	out	1	\|ali\|phd\|phdHtm\|	316	2	3	2.57	32	MRSVDSRSSVTRWVCLTSVI
234	3323234	1	unk	1	\|ali\|phd\|phdHtm\|	444	0	3	0.00	21	MSSAVIVFFVVMLALSSIML
235	3323327	1	out	1	\|ali\|phd\|phdHtm\|	222	9	5	12.00	31	MCYLAAVFLTLCTKSAMAGD

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