Transmembrane helices for trepa (Treponema pallidum)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Treponema pallidum

taxonomy: Bacteria; Spirochaetales; Spirochaetaceae; Treponema
Treponema pallidum is the causative agent of syphilis, a disease characterized by multiple clinical stages and long periods of latent, asymptomatic infection. It is a spirochete, a helical to sinusoidal bacterium with outer and cytoplasmic membranes, a thin peptidoglycan layer, and periplasmic flagella.
The total number of ORF of Treponema pallidum used in this study is 1031.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	55	29	24	5.3	2.8	2.3	22.8	13.0	9.6
2	44	24	20	4.3	2.3	1.9	17.5	10.2	7.3
3	26	14	12	2.5	1.4	1.2	13.2	7.9	5.3
4	15	9	6	1.5	0.9	0.6	10.7	6.5	4.2
5	16	6	10	1.6	0.6	1.0	9.2	5.6	3.6
6	21	15	6	2.0	1.5	0.6	7.7	5.0	2.6
7	15	8	7	1.5	0.8	0.7	5.6	3.6	2.0
8	13	9	4	1.3	0.9	0.4	4.2	2.8	1.4
9	7	3	4	0.7	0.3	0.4	2.9	1.9	1.0
10	11	9	2	1.1	0.9	0.2	2.2	1.6	0.6
11	5	2	3	0.5	0.2	0.3	1.2	0.8	0.4
12	6	5	1	0.6	0.5	0.1	0.7	0.6	0.1
17	1	1	0	0.1	0.1	0.0	0.1	0.1	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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