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Transmembrane helices for thema (Thermotoga maritima)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

305 ae001693_1 1 in 27 |ali|phd|phdHtm| 1059 9 1 -26.70 35 MQVRKRRGLLDVSTAVLVGI

306 ae001802_8 1 in 18 |ali|phd|phdHtm| 306 9 4 -16.94 30 MNLKKESVEWIKALLYALVA

307 ae001700_2 1 in 17 |ali|phd|phdHtm| 327 3 3 -3.80 98 MRVLGIETSCDETAVAVLDD

308 ae001782_7 1 in 15 |ali|phd|phdHtm| 157 5 8 -5.81 29 MRKRAGFTLIELLIVMAIIA

309 ae001711_6 1 in 13 |ali|phd|phdHtm| 218 2 5 -2.00 126 MKIFLDTANLEEIKKGVEWG

310 ae001723_5 1 in 10 |ali|phd|phdHtm| 65 9 9 -12.55 54 MEKLRKFFREVIAEAKKISW

311 ae001819_9 1 in 8 |ali|phd|phdHtm| 283 9 5 -15.27 25 MKIWMISLLIILIVVGAILL

312 ae001716_3 1 in 5 |ali|phd|phdHtm| 335 9 4 -32.00 23 MKKWITLLIIAVLVVLVAVV

313 ae001740_6 1 in 5 |ali|phd|phdHtm| 289 9 4 -15.18 39 MMAKKREEEQKGSPQWMTTY

314 ae001793_11 1 in 5 |ali|phd|phdHtm| 323 9 3 -16.67 24 MSHLKNILFIIIVSLFFISS

315 ae001810_15 1 in 5 |ali|phd|phdHtm| 314 1 3 -1.32 193 MKVVAVGGGTGLSTLLKGLK

316 ae001819_8 1 in 5 |ali|phd|phdHtm| 308 9 4 -16.40 23 MRKYVWIVVFIVLGIYFLTG

317 ae001729_2 1 in 4 |ali|phd|phdHtm| 758 2 2 -2.64 380 MKIERVHVEGFGKFENFSFP

318 ae001707_19 1 in 2 |ali|phd|phdHtm| 341 9 4 -20.00 338 MDLYFVKFRVTSKLTSEIVQ

319 ae001709_10 1 in 2 |ali|phd|phdHtm| 340 9 3 -12.00 85 MIDEIKSGKYKHGDKLPTEK

320 ae001721_13 1 in 2 |ali|phd|phdHtm| 656 9 2 -18.00 28 MSLRKKVFLLMIVVVAGLLL

321 ae001770_13 1 in 2 |ali|phd|phdHtm| 134 9 9 -11.58 29 MRNGSLIVETLISLFLILLT

322 ae001797_12 1 in 2 |ali|phd|phdHtm| 285 9 3 -14.00 112 MIIESRIEKGKPVVGMETTV

323 ae001690_20 1 in 1 |ali|phd|phdHtm| 381 4 3 -4.14 322 MHKKLNPKSMKRENKKMVLR

324 ae001695_10 1 in 1 |ali|phd|phdHtm| 138 9 9 -13.00 31 MRGINRKFAIWFAVLTLLVL

325 ae001695_11 1 in 1 |ali|phd|phdHtm| 182 9 7 -21.33 36 MEKLNIYPFKKRKVKLSTFL

326 ae001701_8 1 in 1 |ali|phd|phdHtm| 771 9 1 -10.22 36 MSFLKKLLEIVLKRKILFFT

327 ae001703_2 1 in 1 |ali|phd|phdHtm| 189 9 6 -18.57 25 MKRVLIWSALITAGILVLIS

328 ae001722_1 1 in 1 |ali|phd|phdHtm| 423 9 2 -24.00 23 MRKLAVVLLISLILLPVLAS

329 ae001726_10 1 in 1 |ali|phd|phdHtm| 204 9 6 -19.43 33 MKRLSSRTIYILLIIMVVFM

330 ae001734_9 1 in 1 |ali|phd|phdHtm| 150 9 9 -16.57 25 MKKLVVYILLIFGAVVMLGP

331 ae001740_1 1 in 1 |ali|phd|phdHtm| 304 9 4 -18.00 28 MPGKRRGFFVVFLITFLILV

332 ae001740_7 1 in 1 |ali|phd|phdHtm| 169 9 7 -15.00 38 MAEEERREEEQPKRRMGASL

333 ae001750_14 1 in 1 |ali|phd|phdHtm| 401 9 3 -29.14 53 MKYFSKSPEEWQKRDEEKEK

334 ae001757_7 1 in 1 |ali|phd|phdHtm| 389 9 3 -46.00 22 MKKMFLFIFAIIPLVSFSVV

335 ae001759_4 1 in 1 |ali|phd|phdHtm| 193 9 7 -19.27 30 MEGGIRVKRGLIVLIVILVL

336 ae001760_6 1 in 1 |ali|phd|phdHtm| 66 9 9 -10.00 63 MRVLHLDRGFERTLITLMVL

337 ae001765_7 1 in 1 |ali|phd|phdHtm| 233 4 5 -4.67 33 MARITLSDGQSRFLFWLIVV

338 ae001770_6 1 in 1 |ali|phd|phdHtm| 368 9 3 -16.00 23 MKWSLMIFLILAVATVFSES

339 ae001771_2 1 in 1 |ali|phd|phdHtm| 412 9 4 -9.33 37 MRVRKKPLVILTIFSVAVWI

340 ae001778_19 1 in 1 |ali|phd|phdHtm| 557 1 2 -1.09 62 MKRFLVVLVLVLALVSVFGQ

341 ae001787_8 1 in 1 |ali|phd|phdHtm| 144 8 8 -8.74 125 MMKQKNSIIPSRSFFRMLGY

342 ae001788_4 1 in 1 |ali|phd|phdHtm| 258 9 4 -12.67 24 MSKMFITVFFGIMLVTVSLI

343 ae001800_17 1 in 1 |ali|phd|phdHtm| 199 9 5 -36.00 22 MRRISIVLLIVFATSIFPFS

344 ae001804_10 1 in 1 |ali|phd|phdHtm| 120 9 9 -19.29 86 MKLLKDDRLNRILDGEEPIE

345 ae001806_11 1 in 1 |ali|phd|phdHtm| 128 9 8 -9.33 24 MKRDIFYVIILTVFAVLFML

346 ae001807_5 1 in 1 |ali|phd|phdHtm| 218 9 5 -30.86 25 MKRSSKIVLVIVLIAVALSA

347 ae001810_10 1 in 1 |ali|phd|phdHtm| 581 9 1 -24.36 29 MRKWMKKWQGVIIWTIAIAF

348 ae001810_14 1 in 1 |ali|phd|phdHtm| 295 9 4 -16.00 119 MVSLLRRTFSEEIKEELVNV

349 ae001820_5 1 in 1 |ali|phd|phdHtm| 220 9 7 -9.08 32 MSSLKKELFWKITIALIVAF

350 ae001822_4 1 in 1 |ali|phd|phdHtm| 308 9 3 -13.00 22 MKYVLWAILILSLLAGCVLF

351 ae001722_5 1 out 67 |ali|phd|phdHtm| 368 6 3 6.92 206 MMGLKAHAMVLEKFNQPLVY

352 ae001805_6 1 out 50 |ali|phd|phdHtm| 164 9 8 18.36 28 MGFLEINWTSAAMLMLFVLM

353 ae001720_11 1 out 33 |ali|phd|phdHtm| 395 3 3 3.72 234 MRAVRLHAKWDPRPEFKLGP

354 ae001807_12 1 unk 33 |ali|phd|phdHtm| 412 0 2 0.00 21 MSVFLFVIVAVLFVLLFLVF

355 ae001753_4 1 unk 14 |ali|phd|phdHtm| 305 0 4 0.00 20 MLIALVVLVFFLIVLAASSI

356 ae001785_14 1 out 13 |ali|phd|phdHtm| 68 5 9 5.09 46 MFFRWLSQLLPLSRSVESII

357 ae001789_6 1 out 13 |ali|phd|phdHtm| 259 5 5 5.36 139 MRMNIQKHGEDWKGTVVIVH

358 ae001799_19 1 out 11 |ali|phd|phdHtm| 216 1 5 1.52 109 MKYGIVGYSGRMGQEIQKVF

359 ae001711_9 1 out 10 |ali|phd|phdHtm| 317 4 4 4.88 178 MKVLLIEKPGVASVVEKEIP

360 ae001802_12 1 out 10 |ali|phd|phdHtm| 267 6 4 6.72 169 MADKKRLDQLVLERGLVESR

361 ae001707_15 1 out 9 |ali|phd|phdHtm| 490 5 2 5.84 307 MNISTIVSNLKDLILEVRAP

362 ae001803_8 1 out 9 |ali|phd|phdHtm| 240 6 7 6.81 59 MITHLTAAVPLFFFVVIVRK

363 ae001771_12 1 out 7 |ali|phd|phdHtm| 530 6 2 6.48 170 MSLKGKTLLVSTITLAAVVL

364 ae001774_4 1 out 6 |ali|phd|phdHtm| 431 6 3 6.79 388 MQMFCYQCSQTANGTGCTEY

365 ae001747_13 1 out 5 |ali|phd|phdHtm| 424 9 2 10.68 326 MTQMEMARKGVVSDEMKKVA

366 ae001811_2 1 unk 5 |ali|phd|phdHtm| 204 0 6 0.00 21 MRVFLGIIIGIVVGGLFFLF

367 ae001726_1 1 out 4 |ali|phd|phdHtm| 1415 9 0 16.00 1117 MTGVCIGSSSVSFYSEKEKG

368 ae001752_8 1 out 3 |ali|phd|phdHtm| 116 9 9 25.00 42 MPEIIYAAAPGASNGTTTTA

369 ae001696_1 1 out 2 |ali|phd|phdHtm| 127 9 9 11.28 22 MNIIEVLIVIAISLMIMGFF

370 ae001703_3 1 out 2 |ali|phd|phdHtm| 324 4 4 4.00 227 MPVTFLTGTAETQKEELIKK

371 ae001704_5 1 out 2 |ali|phd|phdHtm| 87 0 9 0.29 59 MEVLKVASNSNPNKVAGALA

372 ae001770_15 1 out 2 |ali|phd|phdHtm| 178 3 9 3.78 46 MPHFSVNNQNGGDTMRNGFT

373 ae001713_7 1 out 1 |ali|phd|phdHtm| 83 9 9 21.88 35 MCPFCFWSWGFWPWNWGGGV

374 ae001737_3 1 out 1 |ali|phd|phdHtm| 381 4 2 4.00 270 MNNKGKLAILFIDALPYFKS

375 ae001738_10 1 unk 1 |ali|phd|phdHtm| 176 0 7 0.00 18 MTVLIIVILIIVVFILTRNL

376 ae001765_2 1 out 1 |ali|phd|phdHtm| 285 9 3 11.81 243 MRLITFDASYDPIAEESKTV

377 ae001766_2 1 out 1 |ali|phd|phdHtm| 87 2 9 2.21 61 MEVLKVSSKSDPNKVAGAIA

378 ae001769_17 1 out 1 |ali|phd|phdHtm| 265 7 5 8.00 147 MEGFRAGQKALQPLLNLKPS

379 ae001773_10 1 out 1 |ali|phd|phdHtm| 282 4 4 4.00 167 MRLDEYISRDIAWCPGCGNF

380 ae001800_2 1 out 1 |ali|phd|phdHtm| 274 0 4 0.50 39 MRWAVLLMVVFSALLFSSEV

381 ae001804_11 1 out 1 |ali|phd|phdHtm| 260 5 4 5.82 29 MDGDSVKKYVLVVLFFLAAT

382 ae001812_4 1 out 1 |ali|phd|phdHtm| 403 9 3 11.00 399 MKKLLVFVLMLGAFVGISQQ

383 ae001818_4 1 out 1 |ali|phd|phdHtm| 195 8 7 8.00 81 MVCVVVGRFPIYVEEEFTSD

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
305	ae001693_1	1	in	27	\|ali\|phd\|phdHtm\|	1059	9	1	-26.70	35	MQVRKRRGLLDVSTAVLVGI
306	ae001802_8	1	in	18	\|ali\|phd\|phdHtm\|	306	9	4	-16.94	30	MNLKKESVEWIKALLYALVA
307	ae001700_2	1	in	17	\|ali\|phd\|phdHtm\|	327	3	3	-3.80	98	MRVLGIETSCDETAVAVLDD
308	ae001782_7	1	in	15	\|ali\|phd\|phdHtm\|	157	5	8	-5.81	29	MRKRAGFTLIELLIVMAIIA
309	ae001711_6	1	in	13	\|ali\|phd\|phdHtm\|	218	2	5	-2.00	126	MKIFLDTANLEEIKKGVEWG
310	ae001723_5	1	in	10	\|ali\|phd\|phdHtm\|	65	9	9	-12.55	54	MEKLRKFFREVIAEAKKISW
311	ae001819_9	1	in	8	\|ali\|phd\|phdHtm\|	283	9	5	-15.27	25	MKIWMISLLIILIVVGAILL
312	ae001716_3	1	in	5	\|ali\|phd\|phdHtm\|	335	9	4	-32.00	23	MKKWITLLIIAVLVVLVAVV
313	ae001740_6	1	in	5	\|ali\|phd\|phdHtm\|	289	9	4	-15.18	39	MMAKKREEEQKGSPQWMTTY
314	ae001793_11	1	in	5	\|ali\|phd\|phdHtm\|	323	9	3	-16.67	24	MSHLKNILFIIIVSLFFISS
315	ae001810_15	1	in	5	\|ali\|phd\|phdHtm\|	314	1	3	-1.32	193	MKVVAVGGGTGLSTLLKGLK
316	ae001819_8	1	in	5	\|ali\|phd\|phdHtm\|	308	9	4	-16.40	23	MRKYVWIVVFIVLGIYFLTG
317	ae001729_2	1	in	4	\|ali\|phd\|phdHtm\|	758	2	2	-2.64	380	MKIERVHVEGFGKFENFSFP
318	ae001707_19	1	in	2	\|ali\|phd\|phdHtm\|	341	9	4	-20.00	338	MDLYFVKFRVTSKLTSEIVQ
319	ae001709_10	1	in	2	\|ali\|phd\|phdHtm\|	340	9	3	-12.00	85	MIDEIKSGKYKHGDKLPTEK
320	ae001721_13	1	in	2	\|ali\|phd\|phdHtm\|	656	9	2	-18.00	28	MSLRKKVFLLMIVVVAGLLL
321	ae001770_13	1	in	2	\|ali\|phd\|phdHtm\|	134	9	9	-11.58	29	MRNGSLIVETLISLFLILLT
322	ae001797_12	1	in	2	\|ali\|phd\|phdHtm\|	285	9	3	-14.00	112	MIIESRIEKGKPVVGMETTV
323	ae001690_20	1	in	1	\|ali\|phd\|phdHtm\|	381	4	3	-4.14	322	MHKKLNPKSMKRENKKMVLR
324	ae001695_10	1	in	1	\|ali\|phd\|phdHtm\|	138	9	9	-13.00	31	MRGINRKFAIWFAVLTLLVL
325	ae001695_11	1	in	1	\|ali\|phd\|phdHtm\|	182	9	7	-21.33	36	MEKLNIYPFKKRKVKLSTFL
326	ae001701_8	1	in	1	\|ali\|phd\|phdHtm\|	771	9	1	-10.22	36	MSFLKKLLEIVLKRKILFFT
327	ae001703_2	1	in	1	\|ali\|phd\|phdHtm\|	189	9	6	-18.57	25	MKRVLIWSALITAGILVLIS
328	ae001722_1	1	in	1	\|ali\|phd\|phdHtm\|	423	9	2	-24.00	23	MRKLAVVLLISLILLPVLAS
329	ae001726_10	1	in	1	\|ali\|phd\|phdHtm\|	204	9	6	-19.43	33	MKRLSSRTIYILLIIMVVFM
330	ae001734_9	1	in	1	\|ali\|phd\|phdHtm\|	150	9	9	-16.57	25	MKKLVVYILLIFGAVVMLGP
331	ae001740_1	1	in	1	\|ali\|phd\|phdHtm\|	304	9	4	-18.00	28	MPGKRRGFFVVFLITFLILV
332	ae001740_7	1	in	1	\|ali\|phd\|phdHtm\|	169	9	7	-15.00	38	MAEEERREEEQPKRRMGASL
333	ae001750_14	1	in	1	\|ali\|phd\|phdHtm\|	401	9	3	-29.14	53	MKYFSKSPEEWQKRDEEKEK
334	ae001757_7	1	in	1	\|ali\|phd\|phdHtm\|	389	9	3	-46.00	22	MKKMFLFIFAIIPLVSFSVV
335	ae001759_4	1	in	1	\|ali\|phd\|phdHtm\|	193	9	7	-19.27	30	MEGGIRVKRGLIVLIVILVL
336	ae001760_6	1	in	1	\|ali\|phd\|phdHtm\|	66	9	9	-10.00	63	MRVLHLDRGFERTLITLMVL
337	ae001765_7	1	in	1	\|ali\|phd\|phdHtm\|	233	4	5	-4.67	33	MARITLSDGQSRFLFWLIVV
338	ae001770_6	1	in	1	\|ali\|phd\|phdHtm\|	368	9	3	-16.00	23	MKWSLMIFLILAVATVFSES
339	ae001771_2	1	in	1	\|ali\|phd\|phdHtm\|	412	9	4	-9.33	37	MRVRKKPLVILTIFSVAVWI
340	ae001778_19	1	in	1	\|ali\|phd\|phdHtm\|	557	1	2	-1.09	62	MKRFLVVLVLVLALVSVFGQ
341	ae001787_8	1	in	1	\|ali\|phd\|phdHtm\|	144	8	8	-8.74	125	MMKQKNSIIPSRSFFRMLGY
342	ae001788_4	1	in	1	\|ali\|phd\|phdHtm\|	258	9	4	-12.67	24	MSKMFITVFFGIMLVTVSLI
343	ae001800_17	1	in	1	\|ali\|phd\|phdHtm\|	199	9	5	-36.00	22	MRRISIVLLIVFATSIFPFS
344	ae001804_10	1	in	1	\|ali\|phd\|phdHtm\|	120	9	9	-19.29	86	MKLLKDDRLNRILDGEEPIE
345	ae001806_11	1	in	1	\|ali\|phd\|phdHtm\|	128	9	8	-9.33	24	MKRDIFYVIILTVFAVLFML
346	ae001807_5	1	in	1	\|ali\|phd\|phdHtm\|	218	9	5	-30.86	25	MKRSSKIVLVIVLIAVALSA
347	ae001810_10	1	in	1	\|ali\|phd\|phdHtm\|	581	9	1	-24.36	29	MRKWMKKWQGVIIWTIAIAF
348	ae001810_14	1	in	1	\|ali\|phd\|phdHtm\|	295	9	4	-16.00	119	MVSLLRRTFSEEIKEELVNV
349	ae001820_5	1	in	1	\|ali\|phd\|phdHtm\|	220	9	7	-9.08	32	MSSLKKELFWKITIALIVAF
350	ae001822_4	1	in	1	\|ali\|phd\|phdHtm\|	308	9	3	-13.00	22	MKYVLWAILILSLLAGCVLF
351	ae001722_5	1	out	67	\|ali\|phd\|phdHtm\|	368	6	3	6.92	206	MMGLKAHAMVLEKFNQPLVY
352	ae001805_6	1	out	50	\|ali\|phd\|phdHtm\|	164	9	8	18.36	28	MGFLEINWTSAAMLMLFVLM
353	ae001720_11	1	out	33	\|ali\|phd\|phdHtm\|	395	3	3	3.72	234	MRAVRLHAKWDPRPEFKLGP
354	ae001807_12	1	unk	33	\|ali\|phd\|phdHtm\|	412	0	2	0.00	21	MSVFLFVIVAVLFVLLFLVF
355	ae001753_4	1	unk	14	\|ali\|phd\|phdHtm\|	305	0	4	0.00	20	MLIALVVLVFFLIVLAASSI
356	ae001785_14	1	out	13	\|ali\|phd\|phdHtm\|	68	5	9	5.09	46	MFFRWLSQLLPLSRSVESII
357	ae001789_6	1	out	13	\|ali\|phd\|phdHtm\|	259	5	5	5.36	139	MRMNIQKHGEDWKGTVVIVH
358	ae001799_19	1	out	11	\|ali\|phd\|phdHtm\|	216	1	5	1.52	109	MKYGIVGYSGRMGQEIQKVF
359	ae001711_9	1	out	10	\|ali\|phd\|phdHtm\|	317	4	4	4.88	178	MKVLLIEKPGVASVVEKEIP
360	ae001802_12	1	out	10	\|ali\|phd\|phdHtm\|	267	6	4	6.72	169	MADKKRLDQLVLERGLVESR
361	ae001707_15	1	out	9	\|ali\|phd\|phdHtm\|	490	5	2	5.84	307	MNISTIVSNLKDLILEVRAP
362	ae001803_8	1	out	9	\|ali\|phd\|phdHtm\|	240	6	7	6.81	59	MITHLTAAVPLFFFVVIVRK
363	ae001771_12	1	out	7	\|ali\|phd\|phdHtm\|	530	6	2	6.48	170	MSLKGKTLLVSTITLAAVVL
364	ae001774_4	1	out	6	\|ali\|phd\|phdHtm\|	431	6	3	6.79	388	MQMFCYQCSQTANGTGCTEY
365	ae001747_13	1	out	5	\|ali\|phd\|phdHtm\|	424	9	2	10.68	326	MTQMEMARKGVVSDEMKKVA
366	ae001811_2	1	unk	5	\|ali\|phd\|phdHtm\|	204	0	6	0.00	21	MRVFLGIIIGIVVGGLFFLF
367	ae001726_1	1	out	4	\|ali\|phd\|phdHtm\|	1415	9	0	16.00	1117	MTGVCIGSSSVSFYSEKEKG
368	ae001752_8	1	out	3	\|ali\|phd\|phdHtm\|	116	9	9	25.00	42	MPEIIYAAAPGASNGTTTTA
369	ae001696_1	1	out	2	\|ali\|phd\|phdHtm\|	127	9	9	11.28	22	MNIIEVLIVIAISLMIMGFF
370	ae001703_3	1	out	2	\|ali\|phd\|phdHtm\|	324	4	4	4.00	227	MPVTFLTGTAETQKEELIKK
371	ae001704_5	1	out	2	\|ali\|phd\|phdHtm\|	87	0	9	0.29	59	MEVLKVASNSNPNKVAGALA
372	ae001770_15	1	out	2	\|ali\|phd\|phdHtm\|	178	3	9	3.78	46	MPHFSVNNQNGGDTMRNGFT
373	ae001713_7	1	out	1	\|ali\|phd\|phdHtm\|	83	9	9	21.88	35	MCPFCFWSWGFWPWNWGGGV
374	ae001737_3	1	out	1	\|ali\|phd\|phdHtm\|	381	4	2	4.00	270	MNNKGKLAILFIDALPYFKS
375	ae001738_10	1	unk	1	\|ali\|phd\|phdHtm\|	176	0	7	0.00	18	MTVLIIVILIIVVFILTRNL
376	ae001765_2	1	out	1	\|ali\|phd\|phdHtm\|	285	9	3	11.81	243	MRLITFDASYDPIAEESKTV
377	ae001766_2	1	out	1	\|ali\|phd\|phdHtm\|	87	2	9	2.21	61	MEVLKVSSKSDPNKVAGAIA
378	ae001769_17	1	out	1	\|ali\|phd\|phdHtm\|	265	7	5	8.00	147	MEGFRAGQKALQPLLNLKPS
379	ae001773_10	1	out	1	\|ali\|phd\|phdHtm\|	282	4	4	4.00	167	MRLDEYISRDIAWCPGCGNF
380	ae001800_2	1	out	1	\|ali\|phd\|phdHtm\|	274	0	4	0.50	39	MRWAVLLMVVFSALLFSSEV
381	ae001804_11	1	out	1	\|ali\|phd\|phdHtm\|	260	5	4	5.82	29	MDGDSVKKYVLVVLFFLAAT
382	ae001812_4	1	out	1	\|ali\|phd\|phdHtm\|	403	9	3	11.00	399	MKKLLVFVLMLGAFVGISQQ
383	ae001818_4	1	out	1	\|ali\|phd\|phdHtm\|	195	8	7	8.00	81	MVCVVVGRFPIYVEEEFTSD

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