Transmembrane helices for thema (Thermotoga maritima)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Thermotoga maritima

taxonomy: Bacteria; Thermotogales; Thermotoga
Thermotoga maritima, a rod-shaped bacterium belonging to the order Thermotogales, was originally isolated from geothermal heated marine sediment at Vulcano, Italy. The organism has an optimum growth temperature of 80 degrees C. T. maritima metabolizes many simple and complex carbohydrates including glucose, sucrose, starch, cellulose, and xylan.
The total number of ORF of Thermotoga maritima used in this study is 1846.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	79	46	29	4.3	2.5	1.6	20.7	12.2	8.3
2	57	37	20	3.1	2.0	1.1	16.5	9.8	6.7
3	25	14	11	1.4	0.8	0.6	13.4	7.7	5.6
4	31	16	15	1.7	0.9	0.8	12.0	7.0	5.0
5	25	12	13	1.4	0.7	0.7	10.3	6.1	4.2
6	48	38	10	2.6	2.1	0.5	9.0	5.5	3.5
7	37	19	18	2.0	1.0	1.0	6.4	3.4	3.0
8	20	14	6	1.1	0.8	0.3	4.4	2.4	2.0
9	15	7	8	0.8	0.4	0.4	3.3	1.6	1.7
10	13	10	3	0.7	0.5	0.2	2.5	1.2	1.2
11	15	4	11	0.8	0.2	0.6	1.8	0.7	1.1
12	12	7	5	0.7	0.4	0.3	1.0	0.5	0.5
13	4	2	2	0.2	0.1	0.1	0.3	0.1	0.2
14	1	0	1	0.1	0.0	0.1	0.1	0.0	0.1
15	1	0	1	0.1	0.0	0.1	0.1	0.0	0.1

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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