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Transmembrane helices for syny3 (Synechocystis PCC6803)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN
542d10107411in81|ali|phd|phdHtm|45403-0.40148MAIATINPATGQTVQTFIAH
543d10112151in62|ali|phd|phdHtm|45623-2.44131MNTAKTVVAEQRDFFRQGKT
544d10187261in62|ali|phd|phdHtm|36613-1.71345MDTATTKGNKATVLIVDDSP
545d10182821in37|ali|phd|phdHtm|67891-17.0026MKIGRITAYALVVIIFVLFF
546d10184841in35|ali|phd|phdHtm|16888-8.2044MASNFKFKLLSQLSKKRAEG
547d10108601in28|ali|phd|phdHtm|88591-11.00202MFKSFSRKLKRSTVNFLHQL
548d10180871in26|ali|phd|phdHtm|12099-15.0430MFKLFNQASRIFFGIALPCL
549d10179951in19|ali|phd|phdHtm|38043-4.8149MYKSPFFKLRSILLLARNDQ
550d10179161in18|ali|phd|phdHtm|21896-11.8043MTENIVRETSKKKESPPENT
551d10184831in18|ali|phd|phdHtm|17048-4.0345MKAQFSIGSSSNCRHFNGTR
552d10109011in17|ali|phd|phdHtm|40292-10.8155MGALKWENFAVAPYAGEQTT
553d10111491in17|ali|phd|phdHtm|65342-4.52167MSDTIESILQEERLFDPPTE
554d10173951in17|ali|phd|phdHtm|19686-8.9535MQNSPIPSPWQFIKENIPLL
555d10179781in17|ali|phd|phdHtm|74991-10.04170MATRSRKAPSAPKKSQTNLS
556d10190431in16|ali|phd|phdHtm|65092-11.5950MSSTSTLKPSSTKVKAKAQP
557d10193151in16|ali|phd|phdHtm|18308-0.2848MVMKLPNPTFLLKLVFNPHP
558d10188421in15|ali|phd|phdHtm|34833-3.88100MAIILAIETSCDETAVAIVN
559d10183621in13|ali|phd|phdHtm|6499-12.0350MAQRTRLGDILRPLNSEYGK
560d10173361in9|ali|phd|phdHtm|14249-4.2443MTNRRKKSMRLPDEFEAQGE
561d10193161in9|ali|phd|phdHtm|18687-8.8744MAYKNELIKALKLCLFTQKS
562d10193891in9|ali|phd|phdHtm|17537-3.3246MNSSKTAFRGHNVFLLRHAL
563d10178761in8|ali|phd|phdHtm|60792-9.7360MDSSHPKLNSSTANSSPFTK
564d10187771in6|ali|phd|phdHtm|17237-3.33136MDRGFCDLQRIKRLQKENNK
565d10113711in5|ali|phd|phdHtm|36994-10.00157MLDSAQLIFDLQKVNTTSKR
566d10179321in5|ali|phd|phdHtm|95381-8.00238MVSTPTKPQFSQEILELQAA
567d10181541in5|ali|phd|phdHtm|8199-9.2566MVKKEAVRTDSTEDNSVDNV
568d10184681in5|ali|phd|phdHtm|61032-3.3333MKNFFQQMVASFFGTLAAIV
569d10174531in4|ali|phd|phdHtm|9099-15.2085MSVTIETDLKEILGEIKTKL
570d10179521in4|ali|phd|phdHtm|39143-4.4845MRKFVMEFTTKTGGSLPTNL
571d10112801in3|ali|phd|phdHtm|39863-6.00325MSMPRLSLCMIVQNEAAFLG
572d10114481in3|ali|phd|phdHtm|25884-8.2456MGKKPKSSFNVNQDDIPEVI
573d10176121in3|ali|phd|phdHtm|45192-12.00182MKLVKDVQLRRYTPPTCTLE
574d10178211in3|ali|phd|phdHtm|24817-1.43204MSANLAQLHQALENRTALKV
575d10182831in3|ali|phd|phdHtm|39493-13.4332MVNSVIGWLRRRFLLVGLSV
576d10186641in3|ali|phd|phdHtm|19097-10.3530MIRNFVISLRSTALLWILTA
577d10190501in3|ali|phd|phdHtm|29685-8.9543MFNKVINFLPMGKFFCFFTY
578d10107921in2|ali|phd|phdHtm|16937-3.2535MTAGRNQRLSPVLLQSSIGL
579d10110431in2|ali|phd|phdHtm|22705-0.6276MTPGGLIFSATLTTIQWSGD
580d10113761in2|ali|phd|phdHtm|30593-14.0043MDCQSISKLLDLILRKMLKF
581d10179971in2|ali|phd|phdHtm|36083-8.6947MKPSIVYKLFFLVSAPKFKQ
582d10190241in2|ali|phd|phdHtm|41423-2.89405MGAVLWGESIWFSHPPLRPG
583d10195701in2|ali|phd|phdHtm|35103-0.68215MGGTTGGGSNPCGHESSTLS
584d10195721in2|ali|phd|phdHtm|17167-6.9577MSDLIVIGYDDEYKAEEVRL
585d10107111in1|ali|phd|phdHtm|71491-36.00540MFIPLDFYRILGIPPQSGGE
586d10107591in1|ali|phd|phdHtm|41273-7.5444MPPFSAIVLFSMTKSPQKKQ
587d10107991in1|ali|phd|phdHtm|49652-5.3333MLAKYFSEPIDRAALGLIGV
588d10108441in1|ali|phd|phdHtm|17578-7.7636MKLIDSRGRIFGIVSLLDLG
589d10108791in1|ali|phd|phdHtm|48292-12.8342MNPCKFFRLIIFSRRRSADN
590d10108951in1|ali|phd|phdHtm|9799-9.0865MELFDLVEAVDQFIGDRHTL
591d10109261in1|ali|phd|phdHtm|31593-16.00133MADRFSPSDPSLASQLEATL
592d10109941in1|ali|phd|phdHtm|38822-2.5034MPQRLPRGLFAPINLDLRKK
593d10110071in1|ali|phd|phdHtm|26187-8.5041MTGKVAESDPKGLLVLILPL
594d10110181in1|ali|phd|phdHtm|69191-20.00665MPTVHCSNCDCQAPNDLGDR
595d10110671in1|ali|phd|phdHtm|55392-15.0831MGKLNRGWKPNPVVIFVALA
596d10110861in1|ali|phd|phdHtm|7089-8.5262MGESKRRKQSLGDRYGQDQR
597d10110941in1|ali|phd|phdHtm|44682-8.00248MLDIQAIADHAHQGAAALGI
598d10112391in1|ali|phd|phdHtm|15098-10.4237MKFRHRQDRDKLPELEITPM
599d10112401in1|ali|phd|phdHtm|14749-4.7135MKSRVRGARTPGINLVPMID
600d10112891in1|ali|phd|phdHtm|23404-0.9374MKQEIGALLHLHVDEIEPLF
601d10173501in1|ali|phd|phdHtm|40182-8.5165MTMRQSLSRSSQPSQTWPYW
602d10175131in1|ali|phd|phdHtm|37713-1.7947MVGAIARWASLKIVMNPRQL
603d10175521in1|ali|phd|phdHtm|20196-16.0033MIMSVCLPWLARCRRFLIVS
604d10175611in1|ali|phd|phdHtm|63741-4.5042MNKTFNLPIARYFQSGLPLQ
605d10175921in1|ali|phd|phdHtm|48592-10.00350MGQPGLTMGFKTVFKKPLVM
606d10176921in1|ali|phd|phdHtm|26925-2.2960MASSPKAPKSHRKFQSIYHP
607d10177701in1|ali|phd|phdHtm|17097-26.00168MGSEYQGQFEQKFEEGKAAF
608d10178191in1|ali|phd|phdHtm|6199-14.4759MCFFIIQEDKTMKPMIWHPE
609d10178311in1|ali|phd|phdHtm|33834-3.33302MISNFGHIVKTYLSNFPKHD
610d10179531in1|ali|phd|phdHtm|28204-0.2534MEWREISGSWVLVPPQPIAV
611d10179981in1|ali|phd|phdHtm|79991-12.0048MKNKAIGNLRLTLFLFSRNP
612d10180851in1|ali|phd|phdHtm|40493-15.5861MPSKGRGNGRRKLQGEMPVR
613d10181081in1|ali|phd|phdHtm|42992-10.0038MYPSSSPGHRQYFLGVKSSL
614d10181721in1|ali|phd|phdHtm|32963-6.89302MMAEIFSDPKIPWLPFALDR
615d10183221in1|ali|phd|phdHtm|51792-15.5352MNTDLCRDRRVIMKPRFVLN
616d10183401in1|ali|phd|phdHtm|48162-6.0068MANSTESGSLQSSSTVKVRS
617d10183701in1|ali|phd|phdHtm|28905-0.3331MKQVNFLAGFLSNSLITLVI
618d10183781in1|ali|phd|phdHtm|26795-13.4332MKTLRLSPLLSKLCLILLIV
619d10183791in1|ali|phd|phdHtm|14797-11.5335MRADFFLSDNRAALLKRGLT
620d10184211in1|ali|phd|phdHtm|38234-4.00104MICSATPDRPCKPAGKATTG
621d10184601in1|ali|phd|phdHtm|30153-5.7269MPSPLTSPWLIRSHRHPSST
622d10185241in1|ali|phd|phdHtm|19797-16.0043MVTKRSPTGIRQFVLFNHFS
623d10185451in1|ali|phd|phdHtm|19746-4.5034MPRPCCLKLLGFSSVVKFGL
624d10185481in1|ali|phd|phdHtm|21436-4.00145MRLLYLARRCFGHPSSSLGA
625d10185871in1|ali|phd|phdHtm|17736-3.1136MVSWCQSLFLRWGKVLTLTV
626d10186271in1|ali|phd|phdHtm|47442-4.6730MHQISMKQTRFVQVLIVSIF
627d10186441in1|ali|phd|phdHtm|49292-12.0038MMERFSPTTALWKKLSLFDR
628d10186731in1|ali|phd|phdHtm|13499-10.7542MANEVVKAKRRSKFNFGDFV
629d10186901in1|ali|phd|phdHtm|32543-4.0085MTTPVFCTNCGNRLSPQVRF
630d10187861in1|ali|phd|phdHtm|27695-16.00196MNEEKQQELLISVIITNYNY
631d10187951in1|ali|phd|phdHtm|26435-4.00172MTKNTTVERLPDANPYRYGL
632d10188221in1|ali|phd|phdHtm|51392-12.6947MSDRLVCPMKKPWKTSPTVA
633d10188761in1|ali|phd|phdHtm|6159-5.1654MNNYTKDDDGRLNNFAVEPK
634d10189241in1|ali|phd|phdHtm|24324-2.0048MIDREFLLDPNSHSPSDLSS
635d10189551in1|ali|phd|phdHtm|46392-24.1250MMAKNSNKRGGDSHNGKKSP
636d10190091in1|ali|phd|phdHtm|28464-6.0058MYSLDVNFLKDRNSDVVRST
637d10190811in1|ali|phd|phdHtm|46392-26.9231MDKAIRKIFAYLRPGVILVA
638d10191341in1|ali|phd|phdHtm|14759-5.07119MANWLEHSVQVEVDAPIELV
639d10191771in1|ali|phd|phdHtm|12419-1.5749MELSSREGVGMSYMLVLMKS
640d10191941in1|ali|phd|phdHtm|29094-9.3333MATSRTQRDVWVYVGIGAMV
641d10191981in1|ali|phd|phdHtm|48092-20.00246MTATLSRAAWASNFSQNAVE
num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN
642d10193121in1|ali|phd|phdHtm|22395-10.00116MSRAQPLLPPLPKGKPSHGE
643d10193461in1|ali|phd|phdHtm|26194-26.0028MNKKIKLWGWCLALFLLTLL
644d10194581in1|ali|phd|phdHtm|45162-6.5337MGESTRTGQLTNPDHSLRWI
645d10194811in1|ali|phd|phdHtm|24894-9.6440MKVNLGNCFCLSLSQKKFPL
646d10195681in1|ali|phd|phdHtm|34643-4.00103MTDYSALDKSSFAASESDYI
647d10195781in1|ali|phd|phdHtm|16997-12.2227MLKVFRQSFLVVLTVACLIW
648d10179351out74|ali|phd|phdHtm|401020.00264MQSPLSSSPATNQTTLGLAY
649d10189051out65|ali|phd|phdHtm|128898.5740MAPVIEKSPTVATVNASPTG
650d10174711out34|ali|phd|phdHtm|1439817.8026MFDFDATLPLMALQFVVLAF
651d10174701out31|ali|phd|phdHtm|1799716.4344MLNTLFILAAEAHEAGEGGF
652d10175451out31|ali|phd|phdHtm|391434.68180MGKNLLEQLRQFTVVVADTG
653d10191461out15|ali|phd|phdHtm|274546.00174MAKADKQRLDALLVAKGLCE
654d10178081out14|ali|phd|phdHtm|459916.5440METIYLLAKLPEAYQIFDPL
655d10173901unk11|ali|phd|phdHtm|321040.0021MEAFFLFFLVFFGSAIGTSV
656d10173771out10|ali|phd|phdHtm|275040.40147MANQDLIPVVVNGAAGKMGR
657d10178251out9|ali|phd|phdHtm|81090.2040MSGTTGERPFSDIVTSIRYW
658d10178261out9|ali|phd|phdHtm|44292.4437MATQNPNQPVTYPIFTVRWL
659d10187511out8|ali|phd|phdHtm|287747.9286MRQRYICSAQENLASLGVKA
660d10187001out7|ali|phd|phdHtm|327232.23297MGIGVNSDPKVVHHQSIPKP
661d10113771out6|ali|phd|phdHtm|505222.00346MNVQVLDRYEIVKSLGSGGF
662d10195231out6|ali|phd|phdHtm|178272.2736MFTKFNQVLLASGLVLTSLV
663d10113071out5|ali|phd|phdHtm|4599212.80335MRTAWVAKRQGQTNVSQMHY
664d10177631out5|ali|phd|phdHtm|1269910.6661MALTLVMGAIASPWVSVGTK
665d10114461out4|ali|phd|phdHtm|433838.00229MAAHIALIAHDNKKDALVNF
666d10195851out4|ali|phd|phdHtm|355333.20207MVVSTVNPTAPMPVTPIFNP
667d10107001out3|ali|phd|phdHtm|1759823.0026MTESLPIVYLSVLLIILGGL
668d10108661out3|ali|phd|phdHtm|63393.0952MLVPILIFDVALVAWSLHLM
669d10113741out3|ali|phd|phdHtm|8849120.0037MAISAQSFINVANESLVSTL
670d10173671out3|ali|phd|phdHtm|251040.3041MTISRTIISTRIDCTDYGQA
671d10185201out3|ali|phd|phdHtm|445828.05402MNSPTSPRRPHVVIVGGGFA
672d10189191out3|ali|phd|phdHtm|370535.32179MKRRQLLGQSAIAAGTAAGL
673d10190101out3|ali|phd|phdHtm|275858.0056MTSYSEEYSSTTTIIDEEFD
674d10193771out3|ali|phd|phdHtm|2899412.00122MEAKIEQRQWWVDRWLELLD
675d10195991out3|ali|phd|phdHtm|326434.00193MKLSSKNLDARLDTVYDAIV
676d10107251out2|ali|phd|phdHtm|256142.00179MELTWYDSNSWLIEMGGQRI
677d10176791out2|ali|phd|phdHtm|6739218.0081MQSKFWFEFLQTLPTLPGDT
678d10177051out2|ali|phd|phdHtm|119696.0389MTNQPNQVDPESRNWAMIAH
679d10177551out2|ali|phd|phdHtm|482525.28125MTVIIAGERSGAGKTTITLA
680d10180951out2|ali|phd|phdHtm|142393.9583MKGRKRHLIVDSLGLVLKVI
681d10182901out2|ali|phd|phdHtm|849913.1280MTNNDNIRLEQISEDLEAQR
682d10185681out2|ali|phd|phdHtm|113292.2840MALSGVAIEQLGKISVLHLI
683d10108681out1|ali|phd|phdHtm|231768.00125MPELAVRTEFDYSSEIYKDA
684d10109671out1|ali|phd|phdHtm|149393.0099MGRKHSIRIIKDWLKMEEQK
685d10110281out1|ali|phd|phdHtm|208252.8632MRNQYFSLISPALWPAVVPT
686d10110371out1|ali|phd|phdHtm|2949312.00120MPPRKSMRSPFKSGWSLVSL
687d10111701out1|ali|phd|phdHtm|879912.8662MVFPSPNGGGSDQGNSNFDE
688d10112031out1|ali|phd|phdHtm|1189910.29104MNEERFADTKLMRLQLCLYL
689d10112321out1|ali|phd|phdHtm|407020.00303MPMALWGIVSINQSSPTRRA
690d10114351out1|ali|phd|phdHtm|161575.7542MALHSSSVDASVQVGQPSVR
691d10175121out1|ali|phd|phdHtm|192474.0031MGPLWPCWNPIFPAALDYWL
692d10175371out1|ali|phd|phdHtm|4939216.00141MNFYIAQAKPSPSPETETDQ
693d10177411out1|ali|phd|phdHtm|181474.1235MDLVVMNVRFPHFCLSLMFA
694d10178701out1|ali|phd|phdHtm|265242.3131MATHNLDRVAAPLISKLFPF
695d10179291out1|ali|phd|phdHtm|338838.00276MMKFEDFWYVVAESRNLKPG
696d10180371out1|ali|phd|phdHtm|434738.00288MAGSISSMYSPSAGLISLCQ
697d10181571out1|ali|phd|phdHtm|263161.8074MSFFAQHTSVYAIDLLGFGG
698d10182031out1|ali|phd|phdHtm|103898.6797MNYQRTALGTVKIEQIRGKT
699d10182751out1|ali|phd|phdHtm|2839512.18249MDNVTRYQNAALQYYQDLTG
700d10183931out1|ali|phd|phdHtm|420020.00186MLNIWWSEGYYPEETEAIQS
701d10184561out1|ali|phd|phdHtm|340030.00267METGPQVWAMTKPANRKNSV
702d10185771unk1|ali|phd|phdHtm|84090.0019MFGVLLFLIFFCAVSLAFFA
703d10185851out1|ali|phd|phdHtm|251353.5034MSTIKALLPPKFPQLLTGLA
704d10185911out1|ali|phd|phdHtm|3889312.00294MMAWARLPVAIKTKPSMNLS
705d10186231out1|ali|phd|phdHtm|873718.00706MKILKTLTLRGPNYWSIRRK
706d10186241out1|ali|phd|phdHtm|209666.4472MDTTYQKSNLAWELQQLTQN
707d10186481out1|ali|phd|phdHtm|2649510.67246MLFAHEASRMMCPQKWFKRL
708d10187961out1|ali|phd|phdHtm|288242.29274MFFMQNTKSIYIIIPVHNRR
709d10189031out1|ali|phd|phdHtm|457929.33397MSLTLSHDFVFIIDFSCSQF
710d10189761out1|ali|phd|phdHtm|1319919.2441MGIRETTYYEGGPHIGDLIV
711d10190121out1|ali|phd|phdHtm|274949.7551MRVEPCCQALLAQLLPEVDP
712d10190661out1|ali|phd|phdHtm|989916.0028MFALPILAVAGTFPTYFVAV
713d10191371out1|ali|phd|phdHtm|376434.6231MPAPKIIKIGQNTALILASI
714d10191601out1|ali|phd|phdHtm|146191.4763MDWLFYLFLTAVFYVYRLVS
715d10192841out1|ali|phd|phdHtm|3209612.0057MMENQVNEQTVTSPENGSSA
716d10193201out1|ali|phd|phdHtm|1439911.00139MGSLQGNYLLSLDGGLSMDN
717d10195301out1|ali|phd|phdHtm|372