Transmembrane helices for syny3 (Synechocystis PCC6803)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Synechocystis PCC6803

taxonomy: Bacteria; Cyanobacteria; Chroococcales; Synechocystis
Synechocystis sp. strain PCC 6803 is an cyanobacterium. It carries a complete set of genes for oxygenic photosynthesis, which is the most fundamental life process on the earth.
The total number of ORF of Synechocystis PCC6803 used in this study is 3169.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	177	106	69	5.6	3.3	2.2	22.7	12.7	9.8
2	126	79	47	4.0	2.5	1.5	17.1	9.4	7.7
3	71	28	43	2.2	0.9	1.4	13.1	6.9	6.2
4	66	33	33	2.1	1.0	1.0	10.9	6.0	4.8
5	47	26	21	1.5	0.8	0.7	8.8	5.0	3.8
6	47	31	16	1.5	1.0	0.5	7.3	4.2	3.1
7	50	30	20	1.6	0.9	0.6	5.8	3.2	2.6
8	34	17	17	1.1	0.5	0.5	4.2	2.2	2.0
9	20	11	9	0.6	0.3	0.3	3.2	1.7	1.5
10	21	10	11	0.7	0.3	0.3	2.5	1.4	1.2
11	17	7	10	0.5	0.2	0.3	1.9	1.0	0.8
12	24	18	6	0.8	0.6	0.2	1.3	0.8	0.5
13	9	5	4	0.3	0.2	0.1	0.6	0.3	0.3
14	6	1	5	0.2	0.0	0.2	0.3	0.1	0.2
15	3	2	1	0.1	0.1	0.0	0.1	0.1	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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