--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Rickettsia prowazekii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 e1342765 18 out 1 921 6 0 6.83 24,62,90,140,166,202,248,287,325,369,394,430,452,534,556,583,614,656 MPNIDLLIFTSFLVINLLFG AENDKQGKTHFIVTMPLNTP 2 e1343063 14 out 72 653 2 0 2.42 54,101,138,160,195,237,273,304,353,398,433,480,530,649 MIHQNLAIMIIILPLVSSII TLYIVSFIVVTISYFVLKNI 3 e1342588 14 out 26 486 3 1 3.37 25,57,99,144,166,190,226,267,300,329,353,398,438,477 MIMQFSTTNLLILSTLLVGA LAITLFYFIQILIREFLSYI 4 e1342830 14 out 25 458 8 1 8.62 22,49,83,117,139,171,213,252,280,310,336,385,417,457 MLLLLPEITLTLIALLGQCF LLLINYLVLGFLLFGSFIIL 5 e1342863 14 out 1 461 0 0 0.82 23,66,97,143,172,202,238,280,316,344,378,407,429,454 MFNLPIYNIIVFIYLISILV TIMSLVIFILGQIIISRKLL 6 e1342774 13 in 2 452 3 1 -3.25 35,67,106,129,165,194,283,305,336,359,386,412,441 MLKSAYIKFMLKNSHIYIIW FTTIITIPSLLILLKIKTKI 7 e1343064 13 out 75 491 0 0 0.97 23,54,104,143,165,187,230,263,294,344,390,428,477 MLELPIISITIFLPLISVLY LMPNSILNVFHLSVENLLIK 8 e1342879 13 out 4 507 4 0 4.88 47,110,150,178,201,263,285,328,366,394,417,459,495 MTLFRSGIILAFLTFIARIF VAIFFGTAYLLKVVNYDNST 9 e1342950 13 out 2 408 4 0 4.66 32,66,103,126,169,195,220,247,283,307,345,372,398 MNFKFARFKSIFNILFILII GLCFIPAYILILYLPKTINS 10 e1342589 13 out 1 432 7 1 7.82 35,57,100,133,155,190,234,263,299,334,356,393,416 MILTNHFPIIQILFPLFGAL VSLFYHYKMILLSLPQKYAR 11 e1342706 12 in 50 534 6 1 -6.02 53,97,137,185,224,277,308,343,374,413,449,492 MNSLTNIEDLNCDNQHIPNG EWKLNSPPPFHTFETPPHIV 12 e1342984 12 in 12 670 2 1 -2.23 77,130,159,208,263,330,364,418,455,495,542,662 MSKIGNFLLLTTMCLSGILT WIGVILTTAGFVIALIRKNS 13 e1342480 12 in 11 1008 8 0 -8.98 29,354,383,405,452,479,544,871,893,918,967,1000 MLLSTICIKRPIFAIVLSLM SIGTIFTIFAIPVIYQTFKK 14 e1343121 12 in 10 415 9 0 -13.41 34,61,102,124,165,192,247,282,320,342,376,401 MRKIIIPAMIGNAAEWFDYA SLLSSIFLKFYKETYKKNLV 15 e1342391 12 in 9 418 9 0 -12.16 35,64,106,128,168,196,253,287,325,347,380,406 MNRSKLVFSSSIANTFEWYD LSCIFALFALSFYKDRSLDN 16 e1343148 12 in 6 423 9 1 -13.39 37,66,101,123,174,196,248,285,323,345,377,406 MNRSKLIFLSAISGNVLEYY IIMYTMKKVIKSLLNNYEHR 17 e1342367 12 in 3 498 8 1 -8.46 47,83,112,164,203,237,294,340,369,397,458,481 MSTSKSENYLSELRKIIWPI WIFAVKGLNKEYQVLVNKNE 18 e1342780 12 in 3 429 8 1 -8.53 28,53,106,136,162,200,242,285,335,365,398,420 MSQKLSFWAVFALVTGSQIG FTILGIPVYYGWYRLMNRIK 19 e1342680 12 in 2 507 8 0 -8.47 53,90,118,169,211,247,306,353,380,408,469,491 MNIVDSNCTIWHKARNSKFR CILWLYGVKVLSQNYNKMIK 20 e1343012 12 in 2 500 6 0 -6.88 47,84,115,166,205,245,303,347,374,403,460,488 MLSTSPSRSFKNKFRAAFWP FVCFAWIYAVRKIYFEYQKI 21 e1343028 12 in 2 426 9 1 -9.76 44,76,116,138,188,210,264,299,335,361,392,417 MSIYFSFTHNIFKMKQIKSR LYLCMFTVLAYAINILFSKN 22 e1342617 12 in 1 442 9 0 -11.25 46,84,120,142,185,208,276,316,344,371,402,427 MYKFMLGYEKEQKSLNKEQK IGVTFFMGVTYFERMEKNRN 23 e1342678 12 in 1 406 7 0 -7.23 28,63,110,132,168,190,249,279,314,338,374,399 MPNSAFLVAFFTTIIRYYDY FFIFLLIILISTVLVLHKIL 24 e1342683 12 in 1 510 7 1 -7.36 38,74,101,172,200,250,281,321,376,400,450,495 MHSTNKSHNNSLANAWLKLG MFVYICGKTMFFLKGMKLEY 25 e1342891 12 in 1 407 9 2 -10.66 24,62,94,119,149,178,228,264,307,332,364,395 MKIIAKIPAWMLLCLFILSP SSVISFYYICLLYKKKSIII 26 e1343052 12 in 1 421 8 2 -8.60 28,59,97,120,163,187,247,291,320,347,380,405 MYKKLYLIGILLLGLISGLT IPIFYTIYRKKLHFMNHSKK 27 e1342368 11 in 8 429 0 2 -0.29 42,79,119,173,196,260,300,331,357,391,421 MTNIESKIKMPRSPYVKKYN SISALLGGVLFALTWNHSAE 28 e1342468 11 in 5 519 1 0 -1.88 35,74,102,124,161,186,255,297,328,385,506 MPNNDLKTPPLSKKQLLAFF FIMLLIPFTSNIKLTENVNV 29 e1342561 11 in 3 381 2 1 -2.86 35,68,103,145,175,221,256,283,311,342,372 MTLKNDYKTIFFSLFGIFIF VVGSFVTYHFWYFIQYKLYR 30 e1342587 11 in 3 513 0 0 -0.74 43,82,119,192,214,241,264,311,403,430,507 MFIQNTKFIFPVTNFNLIFD AIFIVLFLLISFILTLCYTA 31 e1342612 11 in 3 470 3 2 -3.17 48,77,119,172,200,234,273,318,366,391,459 MSFLRKKSFESVKEIGSSSG WFITIFILYLVRSFFMGKEQ 32 e1342776 11 in 3 501 8 1 -8.24 45,79,109,165,203,248,303,350,382,404,485 MLPPKIFFEKVKEIIWPIER MMNLWIWNIIKLNKEYIKLC 33 e1342907 11 in 1 1152 5 0 -5.09 48,72,113,181,248,280,309,359,404,426,873 MDTNKLYLFKDRRFLPNFIV EIMKNINLRDFTHSECCDLD 34 e1342486 11 out 21 399 3 0 3.48 21,53,91,150,192,230,253,306,329,351,373 MKLWQKVTLGLILGIIFGIY ATITMIIDNSEDTLDKKVYL 35 e1342966 11 out 1 438 2 2 2.42 37,66,108,171,193,262,305,345,367,399,424 MSNSLSKRDFSIIIGNAMDH VSMITLCAVKRVVTTSCMTK 36 e1342577 10 in 119 398 3 1 -3.47 64,113,145,173,211,261,299,322,355,385 MNKEIIHKKSNGIIEWIDYR FLLVLPLIGKYEKPLPLPKV 37 e1342923 10 in 33 433 9 2 -12.46 35,87,133,166,198,231,285,326,386,408 MGQNFSKKSSNDLVNRIIFT IQTYLFSSKYEGLMKKIKLK 38 e1342712 10 in 17 377 9 0 -10.95 38,76,103,136,167,197,219,292,328,357 MNNEISNNFIKLWWRSTDRQ LLGFTRHRTPLNSYKICNIE 39 e1342585 10 in 15 383 9 0 -9.33 50,80,107,140,175,206,228,306,345,371 MLDTVIKLYDDRINIKTMHK SMLIGFGLVMNAQVHVHTTL 40 e1343081 10 in 6 575 5 1 -5.77 37,73,107,129,168,200,246,288,313,377 MNDHILINVIILLGTAVFIV RLGNYIIAKKEDALSEVEDN 41 e1342390 10 in 1 294 6 0 -6.15 28,58,82,104,133,169,199,229,256,281 MNDALKTYLNGICWFLLSLV PATLFIIYSEKKSMSSKHES 42 e1342642 10 in 1 347 6 2 -6.13 35,70,104,149,184,206,232,268,301,335 MIMTINNSRIVWVDLTKSLA IISLLVSILIRLIPHSNKLV 43 e1342796 10 out 2 512 1 2 1.70 55,92,120,174,254,308,353,382,409,491 MTINASNIENSFSKINSHFS WIWATKELNKEYKNSIKFSQ