--- -------------------------------------------------------------------------------- --- --- All proteins with at least 4 transmembrane helices in Rickettsia prowazekii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 72 e1343053 6 in 12 251 9 4 -13.33 38,90,132,181,211,233 MKLYSFQEHLLEFKIRLLRI SIIICNFIETPRTLNVKYQM 73 e1343100 6 in 7 230 9 5 -12.87 36,78,106,141,172,216 MLKLLTPYYFNKLSRIIIPI LYFLLVLLLRTVILIDKIKN 74 e1342426 6 in 4 311 9 4 -12.67 44,163,188,210,265,292 MQIYPLRFVPNKIDFDFMNF PILTMFANRKFNKKVITQGK 75 e1342409 6 in 3 259 5 0 -5.41 71,110,171,194,218,254 MLLKIAHLVGKHTIKFAQSV VNSSILILISNYLITELFFK 76 e1342628 6 in 3 194 9 5 -14.37 41,71,96,124,152,181 MRYIMNSLFKILYLNRFVEY GLVKILIFSCLFSYIKNLKR 77 e1342792 6 in 2 285 3 4 -3.96 51,109,158,201,230,262 MIMRKILNCLYVALFRTIKD EFNYLMKNYTNIDHNIEQSA 78 e1342873 6 in 1 456 1 1 -1.30 246,313,335,394,422,453 MPNFNMFKSILPDHHNQFAE TTITDALGFLTFLSLANIFL 79 e1343042 6 in 1 362 1 0 -1.23 36,71,118,298,325,354 MINLKTLSLYLTKLYSKCFF LLPSMLIFFISNFIILHYKE 80 e1342337 6 out 83 242 6 6 6.97 46,103,130,168,199,228 MTHSPLIQFNIKKLIDIKMF LQAYIFTILSCMYLNDAINL 81 e1342725 6 out 13 228 5 2 5.53 46,92,114,153,180,228 MITQKEKEHLAKDKQNIYLR LDRFDSIILTAPVFFCINIY 82 e1342548 6 out 4 224 6 3 6.56 28,69,91,131,162,206 MSSIKFALDSRWELAVYCII IAVIYILSIPICYFLKHRGD 83 e1342574 6 out 2 215 0 6 0.87 33,70,119,145,179,205 MNNLFVLIKREFILQHRINN IFLPVSFCLSAYLIKNIYNI 84 e1342417 6 out 1 672 3 1 3.08 239,271,423,449,492,580 MKTLKVLKIFIIVYISSVSL DAVNSSGGEVADLASGSGGG 85 e1342420 6 out 1 1155 0 0 0.86 309,331,417,446,480,616 MKKNIFITSLLILLLLLSSC KPILNEGRKLRTLEDHLKNM 86 e1342362 5 in 7 560 9 1 -11.71 23,376,448,503,544 MNNNIINLIAAVVLSLSIIF IYWSWNNILSIIQQYYINKF 87 e1342875 5 in 7 518 5 1 -5.97 26,382,411,476,498 MQNLPKWKIVLSIICTVFAI ITKLLIDVWVKYFKPKKLGL 88 e1342471 5 in 4 359 3 1 -3.12 20,123,300,322,351 MLSLIGFIITISILVFIHEF AVIILLLIIISISNDIKNLF 89 e1342979 5 in 4 415 2 1 -2.06 46,291,342,364,397 MINNNFSFNIAFRYFRAKKN ATIYPSYRASKLNPVDALRY 90 e1343023 5 in 2 201 2 3 -2.56 43,82,120,154,192 MFTKKQFSEFFTTFFYIGKI IFAAITQYAIIFVLIDIDNR 91 e1343102 5 in 2 300 3 3 -3.00 38,60,102,135,185 MNNSHHRLIKSVSYLSVTTA IIHQDPFGIEEHVNYREYIV 92 e1342633 5 in 1 520 9 1 -13.97 35,70,95,138,168 MLKNILKHFDTKLIKLSAIL LDCLNIDSDIINKGLSLCKS 93 e1342673 5 in 1 172 9 2 -12.10 39,67,89,147,169 MILNMTINYIKKDRYKVLNL LLNICLLIFLGLILFYPKSN 94 e1342771 5 in 1 334 8 1 -8.74 21,60,82,104,209 MFRLLLICITFLALYFGFTF QVLDTQKDKIFILAIEAYLE 95 e1343129 5 in 1 204 2 1 -2.06 44,106,128,171,204 MKTEDFDFEKKRKIFHISAI NDNLSIPLSYCLSTTIFPYI 96 e1342619 5 out 157 583 0 0 0.04 45,80,166,268,290 MDNKNNLNKKNPLLIALSEC TGEEIKKHFKTLKSDTIHIN 97 e1342688 5 out 73 476 2 2 2.33 48,87,181,276,298 MNDNNLNDNYTVVYIIKRLI AHNMQMLMSLLCIYLMVMIL 98 e1342441 5 out 30 218 9 5 9.43 38,78,104,168,206 MLMYLLKYYPKILFIIEGTL YILVILISFIAKIIEKKMIV 99 e1343061 5 out 23 205 9 6 13.99 22,49,75,108,159 MPIFFYLFTTLIIISSLCVV SNVILMTKPILNKGVENIKY 100 e1342352 5 out 7 395 9 0 13.20 53,84,179,205,276 MLSKLNKPALFALIFYPVFI KIIDAEQSIYKLYNQLNTLK 101 e1342693 5 out 4 180 9 7 12.97 42,70,96,138,168 MLKLLSEIGPVIAFFAGFFY FIFILLQLPLLLKNKLPDSK 102 e1342967 5 out 3 282 0 4 0.60 50,118,158,180,240 MLMLNKLLIIFKLMRADKPV NCIKRFSANNYVGVLLIMAF 103 e1342361 5 out 2 388 9 4 10.11 38,82,114,161,188 MQYLTDLYHTSSTELVLLFV EHLISILPEFKLKIFQNVGV 104 e1342513 4 in 178 609 0 2 -0.98 55,94,184,283 MIKQRGDNFMSKNNNHKNAF YKQQEECNQDTQNCKQIICD 105 e1342707 4 in 93 313 7 0 -7.62 62,113,156,238 MNIIRYWSKQSYKKLKVDQE NWIALKNKTAMNNKSSKLMS 106 e1342709 4 in 10 194 9 3 -17.42 31,91,117,156 MISLLKKLYFTFSRSSRIII DNLQIEVMAEKIRHTDHDSK 107 e1342363 4 in 8 181 6 4 -6.21 38,101,147,169 MRIDKNLPNYLTIARIMVIP IAAFLTIITGYSYFKACKTY 108 e1343093 4 in 6 744 9 0 -10.06 33,81,115,156 MLFYINKILSNNKVQAVILW KDGIVSSPNHTGKREILLPE 109 e1342901 4 in 4 601 7 2 -7.09 37,66,109,303 MSMLSDLKQNLRSYFSSRIL AIIDIKFDLKELHLKVRRSG 110 e1342727 4 in 1 437 5 1 -5.11 36,164,186,221 MRAMHFISKLLPKTLFIRFM IYLEDSKNLGGLSVRIEIPK 111 e1342976 4 out 206 576 1 2 1.76 37,78,167,264 MDIKLLYRLAKYLRFYKKDL HYDLSKNSEIYRNICREQLT 112 e1342983 4 out 16 424 4 2 4.47 22,80,105,144 MTTILVIVIIIMISLSALFA NKIDSVKITVLPMTEETISS 113 e1342616 4 out 2 161 3 7 3.66 26,64,110,156 MLIMILTLLLPLTPAGILIQ DSFIVFFSSIVSISRALAFF 114 e1342347 4 out 1 218 0 6 0.54 30,53,83,125 MITFFDITIFAIITLFSFFG LNDIEDVFSKELQDELSNID 115 e1342599 4 out 1 470 4 0 4.96 71,200,263,335 MRSAIIDIGSNALRAVVYES VCERLKDISSARKNISYNFS 116 e1342715 4 out 1 338 0 1 0.71 73,152,178,259 MKILNIMLSRDLGGIQQAFL KQNYDIKVVSKKLQYILKNF 117 e1342786 4 out 1 288 0 3 0.47 62,211,247,276 MYLLSFILGGLNTLLRQLRL MFTTFLVFVAILQINKSLSH 118 e1343011 4 out 1 339 3 1 3.44 160,185,211,291 MLDNNKLQEYFDLYNNYTKT GGHISYLINDKLDKLLKEYT 119 e1343139 4 out 1 220 5 5 5.49 54,100,162,201 MMLEVFYNFYGLNQEIFLFL FANNIIRKVGIISYNKYFTL 120 e1343150 4 out 1 145 9 7 14.44 31,81,103,141 MESYYLWFKSAHLISAICWM NEIPAICMVIAVIMVIVKPF