--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Rickettsia prowazekii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 182 e1342559 1 in 77 175 3 7 -3.80 29 MTGKELNKIVAAILFASLIA ISKPQDIADVILFLKNYVHD 183 e1342428 1 in 17 264 9 4 -16.46 35 MNRDNINSNKTVKQEFGSFA KPWIESVRLSRIFKNLYNVD 184 e1342351 1 in 16 387 3 3 -3.52 101 MKKILGIESSCDDTAISIIT NNKLFSPLDFCPKAKWSLED 185 e1342615 1 in 13 143 0 9 -0.24 42 MAIMFTGSNRKSKKAVVSDI EIHSAGFYRVALISNIKNNE 186 e1342445 1 in 7 66 8 9 -8.99 56 MFREYKIYKFFEQVKQETYK ICLVLDYSIHNIMQLLLTIG 187 e1342724 1 in 7 107 7 9 -7.32 30 MIIHFNKHSKKIILNIFLAL ILGIAAPNEQVFTIKDIASQ 188 e1342857 1 in 7 594 9 1 -13.24 35 MLNKKILHGELISRRAFIIG SIAAAPIARKIMSDVLDKYM 189 e1343132 1 in 7 383 0 3 -0.64 194 MKIVALKEKVKNETRTAITP KDGKIVNYIIREKYESITDN 190 e1342434 1 in 6 344 1 4 -1.19 66 MLSKKYISILKKSPWKDFDS LGGSNKTIINNALLPHMLIN 191 e1342859 1 in 6 561 9 2 -9.00 43 MKQILEKWKPAIKSLIIWNI VFERMISLYGLEPIEQNEEE 192 e1342877 1 in 6 128 9 9 -19.29 31 MQKIVRNRLIKIIICFCSAC DSKFIARQLLAKHDENYRPP 193 e1342625 1 in 5 380 2 3 -2.40 304 MKKIYFIAGEMSGDFIGGHV GFESNRSPSYIAAKIIKQEF 194 e1342692 1 in 5 213 7 9 -7.70 29 MILKIVVVMILRVLIFIILL VVCYANIMNNFTTNNDNNEE 195 e1342618 1 in 4 511 7 2 -7.60 104 MQDLKHNKSQITPEQLKQLL TLLRYLLDPVTDTAFKAFRE 196 e1342708 1 in 4 458 9 3 -9.11 47 MNDTALYDFNDILQSSFISA LNVKLDKESYTDAINAMSYD 197 e1342808 1 in 4 324 2 4 -2.20 169 MSLLDASPIYKPFSYPWAYE EYSKAATTGSWEEVFAEMDN 198 e1342515 1 in 3 67 1 9 -1.19 46 MFRNIQLVAINYSCYFVTHT CYLVCVVSAFSYNDINFIYL 199 e1342609 1 in 2 178 9 7 -12.94 32 MSKKSNKNLAFSLLGLMMSM PEMENIKVITLSYSFFKIRE 200 e1342626 1 in 2 340 9 4 -22.72 29 MLKNLLKTKLSLVIISLTIT IYRKSLITGTPIDLKKQKKY 201 e1343000 1 in 2 149 4 8 -4.47 27 MQQNIVETIIGFLVLIIGLL TQSAINIESLINKIVYSFGN 202 e1342345 1 in 1 191 0 6 -0.18 29 MRNNKNQMYIIKIFIAIAMI SNFVYLISSDGKILSHYYLG 203 e1342389 1 in 1 267 7 5 -8.00 44 MTYKQKFLYNNTAINFKQVI KVTSKVKLNPLIVSIGIGFT 204 e1342467 1 in 1 103 9 9 -14.22 30 MLMFTKIKFILYFLWLLLEI LNKSSITDLKSGKMIKKIKT 205 e1342506 1 in 1 355 9 4 -13.33 24 MIRKILLLVFLAFTIIWFAT NLLELTLGEYKAEKNTENNP 206 e1342556 1 in 1 267 9 6 -10.86 56 MRQKTISNKNKQTKNTNNIS FNQNYKALDLRDRNKYYIQK 207 e1342575 1 in 1 152 9 9 -12.83 43 MWRALRRLIAANPMGFFLWS HPYEKLENQNNLNNTLSDNN 208 e1342640 1 in 1 407 4 3 -4.00 322 MKILQINGYESPGRRFHGLS HYSQDLYIKNLVNIYKETLN 209 e1342641 1 in 1 403 9 3 -12.00 94 MKILLLTDIPPCENYTAGLV ILERMQATFFKFLNRNDNDN 210 e1342651 1 in 1 835 6 1 -6.22 27 MPKALKYSLIIFITIILLLI QESEQVDPVNTLLQKGLKKL 211 e1342703 1 in 1 317 3 5 -3.11 32 MVLKNLSLLIILFFSTSVFS YNTNSKIIMSKHKEFKLIME 212 e1342761 1 in 1 172 9 7 -10.37 72 MTKQELRFYFKDLLIKKQDK QLIDNFPIESHDYKLDLMIS 213 e1342802 1 in 1 201 4 5 -4.67 33 MPSFYKLRKKIWKSLYLLII DENNIIIFKGNVSTIIDLSD 214 e1343080 1 in 1 167 1 8 -1.00 26 MLYLKLKIMIKISIILIIII DYKGWISKKAIWGVYHHNDR 215 e1343122 1 in 1 322 8 6 -8.00 234 MNNAIVLNNVNTNLFKKDII TINSKLIKKVVNNKKNIDRI 216 e1343124 1 in 1 520 8 2 -8.00 358 MIKINLFMKNISDSIKLHFL ILDIFGKLVIPLSVNVVDYK 217 e1342459 1 out 11 239 1 5 1.12 115 MINIGLSGSTGKMGKTIIEI SAIWIQNKPSALYSMQDIYK 218 e1342632 1 unk 10 311 0 4 0.00 20 MEYALLIFSIITILVIIQMV VTGALTIFNQLKTSAEKKKD 219 e1342885 1 out 8 480 7 2 7.04 307 MKYNLNQLFKNHRIKGLSTN LPFDDSEVVRKYLFEISYTR 220 e1343044 1 out 8 317 7 3 7.80 125 MTCKIIGSGGYLPPKIISND DILLFSAIGAGLTWGGALIR 221 e1342747 1 out 7 280 9 5 15.53 272 MNTNSSISIVLTVYNREKLL IIIYNPIITISYIIKNLRRI 222 e1342435 1 out 5 286 2 4 2.39 25 MQQKIYYIIFTIVFGLMLIA EDTNFVISPEAEVFKYLNLA 223 e1342524 1 out 5 292 1 5 2.00 242 MKKISTFIITKNESARIARA NYCMDFKSLLQQKKRNRYPK 224 e1342775 1 out 2 517 9 2 16.00 24 MPSTNLILFFFIFLMVIVIS LDKITQYYWRYREITPWNSI 225 e1342335 1 out 1 158 8 7 8.00 31 MPQFDIDTYYSQIFWLIVTF IEKIAGTKADMNLLQKNIKI 226 e1342405 1 out 1 334 9 3 12.00 265 MLGKIKYIIKHYYLTIINIP SDEIILAENNKYSIIVCKKI 227 e1342477 1 out 1 78 5 9 5.48 31 MLSNSLCPRLTNSLILSKLI IKGLEPTRYGDWQHKGKVTD 228 e1342538 1 out 1 220 6 6 6.61 41 MTDILDEVLSDQNEEKRLIF SNNVSDLLKDQAKALLVSLS 229 e1342545 1 out 1 245 5 7 5.52 216 MQPITNLLMNAIRKAVKFLN GIIIDSSDKFICANRYIAKK 230 e1342820 1 out 1 439 5 2 5.79 381 MSNFKKIKNITISKDLPEVQ VKNVFMPLLHTNVLLLKSKY 231 e1342969 1 out 1 297 1 3 1.59 77 MIKLKSILNFLYNITNRDGF TPELLKPAQPLGPLEDRVNL 232 e1342970 1 out 1 266 3 5 3.33 30 MMKLNTVLSFKNIIGLMLII DNVNIVNSAKFIRIYKDIDD 233 e1342991 1 out 1 164 8 9 8.67 158 MLSYNIDIGGITALSIMTEL KFLILILVARSVITVKIIIY