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Transmembrane helices for ricpr (Rickettsia prowazekii)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

182 e1342559 1 in 77 |ali|phd|phdHtm| 175 3 7 -3.80 29 MTGKELNKIVAAILFASLIA

183 e1342428 1 in 17 |ali|phd|phdHtm| 264 9 4 -16.46 35 MNRDNINSNKTVKQEFGSFA

184 e1342351 1 in 16 |ali|phd|phdHtm| 387 3 3 -3.52 101 MKKILGIESSCDDTAISIIT

185 e1342615 1 in 13 |ali|phd|phdHtm| 143 0 9 -0.24 42 MAIMFTGSNRKSKKAVVSDI

186 e1342445 1 in 7 |ali|phd|phdHtm| 66 8 9 -8.99 56 MFREYKIYKFFEQVKQETYK

187 e1342724 1 in 7 |ali|phd|phdHtm| 107 7 9 -7.32 30 MIIHFNKHSKKIILNIFLAL

188 e1342857 1 in 7 |ali|phd|phdHtm| 594 9 1 -13.24 35 MLNKKILHGELISRRAFIIG

189 e1343132 1 in 7 |ali|phd|phdHtm| 383 0 3 -0.64 194 MKIVALKEKVKNETRTAITP

190 e1342434 1 in 6 |ali|phd|phdHtm| 344 1 4 -1.19 66 MLSKKYISILKKSPWKDFDS

191 e1342859 1 in 6 |ali|phd|phdHtm| 561 9 2 -9.00 43 MKQILEKWKPAIKSLIIWNI

192 e1342877 1 in 6 |ali|phd|phdHtm| 128 9 9 -19.29 31 MQKIVRNRLIKIIICFCSAC

193 e1342625 1 in 5 |ali|phd|phdHtm| 380 2 3 -2.40 304 MKKIYFIAGEMSGDFIGGHV

194 e1342692 1 in 5 |ali|phd|phdHtm| 213 7 9 -7.70 29 MILKIVVVMILRVLIFIILL

195 e1342618 1 in 4 |ali|phd|phdHtm| 511 7 2 -7.60 104 MQDLKHNKSQITPEQLKQLL

196 e1342708 1 in 4 |ali|phd|phdHtm| 458 9 3 -9.11 47 MNDTALYDFNDILQSSFISA

197 e1342808 1 in 4 |ali|phd|phdHtm| 324 2 4 -2.20 169 MSLLDASPIYKPFSYPWAYE

198 e1342515 1 in 3 |ali|phd|phdHtm| 67 1 9 -1.19 46 MFRNIQLVAINYSCYFVTHT

199 e1342609 1 in 2 |ali|phd|phdHtm| 178 9 7 -12.94 32 MSKKSNKNLAFSLLGLMMSM

200 e1342626 1 in 2 |ali|phd|phdHtm| 340 9 4 -22.72 29 MLKNLLKTKLSLVIISLTIT

201 e1343000 1 in 2 |ali|phd|phdHtm| 149 4 8 -4.47 27 MQQNIVETIIGFLVLIIGLL

202 e1342345 1 in 1 |ali|phd|phdHtm| 191 0 6 -0.18 29 MRNNKNQMYIIKIFIAIAMI

203 e1342389 1 in 1 |ali|phd|phdHtm| 267 7 5 -8.00 44 MTYKQKFLYNNTAINFKQVI

204 e1342467 1 in 1 |ali|phd|phdHtm| 103 9 9 -14.22 30 MLMFTKIKFILYFLWLLLEI

205 e1342506 1 in 1 |ali|phd|phdHtm| 355 9 4 -13.33 24 MIRKILLLVFLAFTIIWFAT

206 e1342556 1 in 1 |ali|phd|phdHtm| 267 9 6 -10.86 56 MRQKTISNKNKQTKNTNNIS

207 e1342575 1 in 1 |ali|phd|phdHtm| 152 9 9 -12.83 43 MWRALRRLIAANPMGFFLWS

208 e1342640 1 in 1 |ali|phd|phdHtm| 407 4 3 -4.00 322 MKILQINGYESPGRRFHGLS

209 e1342641 1 in 1 |ali|phd|phdHtm| 403 9 3 -12.00 94 MKILLLTDIPPCENYTAGLV

210 e1342651 1 in 1 |ali|phd|phdHtm| 835 6 1 -6.22 27 MPKALKYSLIIFITIILLLI

211 e1342703 1 in 1 |ali|phd|phdHtm| 317 3 5 -3.11 32 MVLKNLSLLIILFFSTSVFS

212 e1342761 1 in 1 |ali|phd|phdHtm| 172 9 7 -10.37 72 MTKQELRFYFKDLLIKKQDK

213 e1342802 1 in 1 |ali|phd|phdHtm| 201 4 5 -4.67 33 MPSFYKLRKKIWKSLYLLII

214 e1343080 1 in 1 |ali|phd|phdHtm| 167 1 8 -1.00 26 MLYLKLKIMIKISIILIIII

215 e1343122 1 in 1 |ali|phd|phdHtm| 322 8 6 -8.00 234 MNNAIVLNNVNTNLFKKDII

216 e1343124 1 in 1 |ali|phd|phdHtm| 520 8 2 -8.00 358 MIKINLFMKNISDSIKLHFL

217 e1342459 1 out 11 |ali|phd|phdHtm| 239 1 5 1.12 115 MINIGLSGSTGKMGKTIIEI

218 e1342632 1 unk 10 |ali|phd|phdHtm| 311 0 4 0.00 20 MEYALLIFSIITILVIIQMV

219 e1342885 1 out 8 |ali|phd|phdHtm| 480 7 2 7.04 307 MKYNLNQLFKNHRIKGLSTN

220 e1343044 1 out 8 |ali|phd|phdHtm| 317 7 3 7.80 125 MTCKIIGSGGYLPPKIISND

221 e1342747 1 out 7 |ali|phd|phdHtm| 280 9 5 15.53 272 MNTNSSISIVLTVYNREKLL

222 e1342435 1 out 5 |ali|phd|phdHtm| 286 2 4 2.39 25 MQQKIYYIIFTIVFGLMLIA

223 e1342524 1 out 5 |ali|phd|phdHtm| 292 1 5 2.00 242 MKKISTFIITKNESARIARA

224 e1342775 1 out 2 |ali|phd|phdHtm| 517 9 2 16.00 24 MPSTNLILFFFIFLMVIVIS

225 e1342335 1 out 1 |ali|phd|phdHtm| 158 8 7 8.00 31 MPQFDIDTYYSQIFWLIVTF

226 e1342405 1 out 1 |ali|phd|phdHtm| 334 9 3 12.00 265 MLGKIKYIIKHYYLTIINIP

227 e1342477 1 out 1 |ali|phd|phdHtm| 78 5 9 5.48 31 MLSNSLCPRLTNSLILSKLI

228 e1342538 1 out 1 |ali|phd|phdHtm| 220 6 6 6.61 41 MTDILDEVLSDQNEEKRLIF

229 e1342545 1 out 1 |ali|phd|phdHtm| 245 5 7 5.52 216 MQPITNLLMNAIRKAVKFLN

230 e1342820 1 out 1 |ali|phd|phdHtm| 439 5 2 5.79 381 MSNFKKIKNITISKDLPEVQ

231 e1342969 1 out 1 |ali|phd|phdHtm| 297 1 3 1.59 77 MIKLKSILNFLYNITNRDGF

232 e1342970 1 out 1 |ali|phd|phdHtm| 266 3 5 3.33 30 MMKLNTVLSFKNIIGLMLII

233 e1342991 1 out 1 |ali|phd|phdHtm| 164 8 9 8.67 158 MLSYNIDIGGITALSIMTEL

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
182	e1342559	1	in	77	\|ali\|phd\|phdHtm\|	175	3	7	-3.80	29	MTGKELNKIVAAILFASLIA
183	e1342428	1	in	17	\|ali\|phd\|phdHtm\|	264	9	4	-16.46	35	MNRDNINSNKTVKQEFGSFA
184	e1342351	1	in	16	\|ali\|phd\|phdHtm\|	387	3	3	-3.52	101	MKKILGIESSCDDTAISIIT
185	e1342615	1	in	13	\|ali\|phd\|phdHtm\|	143	0	9	-0.24	42	MAIMFTGSNRKSKKAVVSDI
186	e1342445	1	in	7	\|ali\|phd\|phdHtm\|	66	8	9	-8.99	56	MFREYKIYKFFEQVKQETYK
187	e1342724	1	in	7	\|ali\|phd\|phdHtm\|	107	7	9	-7.32	30	MIIHFNKHSKKIILNIFLAL
188	e1342857	1	in	7	\|ali\|phd\|phdHtm\|	594	9	1	-13.24	35	MLNKKILHGELISRRAFIIG
189	e1343132	1	in	7	\|ali\|phd\|phdHtm\|	383	0	3	-0.64	194	MKIVALKEKVKNETRTAITP
190	e1342434	1	in	6	\|ali\|phd\|phdHtm\|	344	1	4	-1.19	66	MLSKKYISILKKSPWKDFDS
191	e1342859	1	in	6	\|ali\|phd\|phdHtm\|	561	9	2	-9.00	43	MKQILEKWKPAIKSLIIWNI
192	e1342877	1	in	6	\|ali\|phd\|phdHtm\|	128	9	9	-19.29	31	MQKIVRNRLIKIIICFCSAC
193	e1342625	1	in	5	\|ali\|phd\|phdHtm\|	380	2	3	-2.40	304	MKKIYFIAGEMSGDFIGGHV
194	e1342692	1	in	5	\|ali\|phd\|phdHtm\|	213	7	9	-7.70	29	MILKIVVVMILRVLIFIILL
195	e1342618	1	in	4	\|ali\|phd\|phdHtm\|	511	7	2	-7.60	104	MQDLKHNKSQITPEQLKQLL
196	e1342708	1	in	4	\|ali\|phd\|phdHtm\|	458	9	3	-9.11	47	MNDTALYDFNDILQSSFISA
197	e1342808	1	in	4	\|ali\|phd\|phdHtm\|	324	2	4	-2.20	169	MSLLDASPIYKPFSYPWAYE
198	e1342515	1	in	3	\|ali\|phd\|phdHtm\|	67	1	9	-1.19	46	MFRNIQLVAINYSCYFVTHT
199	e1342609	1	in	2	\|ali\|phd\|phdHtm\|	178	9	7	-12.94	32	MSKKSNKNLAFSLLGLMMSM
200	e1342626	1	in	2	\|ali\|phd\|phdHtm\|	340	9	4	-22.72	29	MLKNLLKTKLSLVIISLTIT
201	e1343000	1	in	2	\|ali\|phd\|phdHtm\|	149	4	8	-4.47	27	MQQNIVETIIGFLVLIIGLL
202	e1342345	1	in	1	\|ali\|phd\|phdHtm\|	191	0	6	-0.18	29	MRNNKNQMYIIKIFIAIAMI
203	e1342389	1	in	1	\|ali\|phd\|phdHtm\|	267	7	5	-8.00	44	MTYKQKFLYNNTAINFKQVI
204	e1342467	1	in	1	\|ali\|phd\|phdHtm\|	103	9	9	-14.22	30	MLMFTKIKFILYFLWLLLEI
205	e1342506	1	in	1	\|ali\|phd\|phdHtm\|	355	9	4	-13.33	24	MIRKILLLVFLAFTIIWFAT
206	e1342556	1	in	1	\|ali\|phd\|phdHtm\|	267	9	6	-10.86	56	MRQKTISNKNKQTKNTNNIS
207	e1342575	1	in	1	\|ali\|phd\|phdHtm\|	152	9	9	-12.83	43	MWRALRRLIAANPMGFFLWS
208	e1342640	1	in	1	\|ali\|phd\|phdHtm\|	407	4	3	-4.00	322	MKILQINGYESPGRRFHGLS
209	e1342641	1	in	1	\|ali\|phd\|phdHtm\|	403	9	3	-12.00	94	MKILLLTDIPPCENYTAGLV
210	e1342651	1	in	1	\|ali\|phd\|phdHtm\|	835	6	1	-6.22	27	MPKALKYSLIIFITIILLLI
211	e1342703	1	in	1	\|ali\|phd\|phdHtm\|	317	3	5	-3.11	32	MVLKNLSLLIILFFSTSVFS
212	e1342761	1	in	1	\|ali\|phd\|phdHtm\|	172	9	7	-10.37	72	MTKQELRFYFKDLLIKKQDK
213	e1342802	1	in	1	\|ali\|phd\|phdHtm\|	201	4	5	-4.67	33	MPSFYKLRKKIWKSLYLLII
214	e1343080	1	in	1	\|ali\|phd\|phdHtm\|	167	1	8	-1.00	26	MLYLKLKIMIKISIILIIII
215	e1343122	1	in	1	\|ali\|phd\|phdHtm\|	322	8	6	-8.00	234	MNNAIVLNNVNTNLFKKDII
216	e1343124	1	in	1	\|ali\|phd\|phdHtm\|	520	8	2	-8.00	358	MIKINLFMKNISDSIKLHFL
217	e1342459	1	out	11	\|ali\|phd\|phdHtm\|	239	1	5	1.12	115	MINIGLSGSTGKMGKTIIEI
218	e1342632	1	unk	10	\|ali\|phd\|phdHtm\|	311	0	4	0.00	20	MEYALLIFSIITILVIIQMV
219	e1342885	1	out	8	\|ali\|phd\|phdHtm\|	480	7	2	7.04	307	MKYNLNQLFKNHRIKGLSTN
220	e1343044	1	out	8	\|ali\|phd\|phdHtm\|	317	7	3	7.80	125	MTCKIIGSGGYLPPKIISND
221	e1342747	1	out	7	\|ali\|phd\|phdHtm\|	280	9	5	15.53	272	MNTNSSISIVLTVYNREKLL
222	e1342435	1	out	5	\|ali\|phd\|phdHtm\|	286	2	4	2.39	25	MQQKIYYIIFTIVFGLMLIA
223	e1342524	1	out	5	\|ali\|phd\|phdHtm\|	292	1	5	2.00	242	MKKISTFIITKNESARIARA
224	e1342775	1	out	2	\|ali\|phd\|phdHtm\|	517	9	2	16.00	24	MPSTNLILFFFIFLMVIVIS
225	e1342335	1	out	1	\|ali\|phd\|phdHtm\|	158	8	7	8.00	31	MPQFDIDTYYSQIFWLIVTF
226	e1342405	1	out	1	\|ali\|phd\|phdHtm\|	334	9	3	12.00	265	MLGKIKYIIKHYYLTIINIP
227	e1342477	1	out	1	\|ali\|phd\|phdHtm\|	78	5	9	5.48	31	MLSNSLCPRLTNSLILSKLI
228	e1342538	1	out	1	\|ali\|phd\|phdHtm\|	220	6	6	6.61	41	MTDILDEVLSDQNEEKRLIF
229	e1342545	1	out	1	\|ali\|phd\|phdHtm\|	245	5	7	5.52	216	MQPITNLLMNAIRKAVKFLN
230	e1342820	1	out	1	\|ali\|phd\|phdHtm\|	439	5	2	5.79	381	MSNFKKIKNITISKDLPEVQ
231	e1342969	1	out	1	\|ali\|phd\|phdHtm\|	297	1	3	1.59	77	MIKLKSILNFLYNITNRDGF
232	e1342970	1	out	1	\|ali\|phd\|phdHtm\|	266	3	5	3.33	30	MMKLNTVLSFKNIIGLMLII
233	e1342991	1	out	1	\|ali\|phd\|phdHtm\|	164	8	9	8.67	158	MLSYNIDIGGITALSIMTEL

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