Transmembrane helices for ricpr (Rickettsia prowazekii)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Rickettsia prowazekii

taxonomy: Bacteria; Proteobacteria; alpha subdivision; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia
Rickettsia prowazekii is a Gram negative bacteria. It is an obligate intracellular parasites/pathogens in vertebrates (including human) and arthropods (ticks,mites etc.)
The total number of ORF of Rickettsia prowazekii used in this study is 834.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	52	35	16	6.2	4.2	1.9	27.9	16.4	11.4
2	37	22	15	4.4	2.6	1.8	21.7	12.2	9.5
3	24	13	11	2.9	1.6	1.3	17.3	9.6	7.7
4	17	7	10	2.0	0.8	1.2	14.4	8.0	6.4
5	18	10	8	2.2	1.2	1.0	12.4	7.2	5.2
6	14	8	6	1.7	1.0	0.7	10.2	6.0	4.2
7	9	4	5	1.1	0.5	0.6	8.5	5.0	3.5
8	7	4	3	0.8	0.5	0.4	7.4	4.6	2.9
9	12	3	9	1.4	0.4	1.1	6.6	4.1	2.5
10	8	7	1	1.0	0.8	0.1	5.2	3.7	1.4
11	9	7	2	1.1	0.8	0.2	4.2	2.9	1.3
12	16	16	0	1.9	1.9	0.0	3.1	2.0	1.1
13	5	1	4	0.6	0.1	0.5	1.2	0.1	1.1
14	4	0	4	0.5	0.0	0.5	0.6	0.0	0.6
18	1	0	1	0.1	0.0	0.1	0.1	0.0	0.1

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 29, 1999 Contact CUBIC WWW administrator:
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