--- -------------------------------------------------------------------------------- --- --- All proteins with at least 2 transmembrane helices in Pyrococcus horikoshii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 308 d1031867 2 in 25 341 6 3 -6.69 236,328 MIGVVQIPMGVAGPLKINGE LSLLAAIAAKHLARAHKMLG 309 d1030541 2 in 13 325 2 3 -2.35 151,305 MKTLIEIKQTPDGIIKADKV KAVSRGLNPDNPRFLDKVVR 310 d1030522 2 in 9 739 9 1 -12.38 31,328 MQFKKKIILIMILAAVVSTA AAQELRDIVEKMRGIIAKFK 311 d1030485 2 in 6 314 9 6 -16.20 254,299 MSIIIPAYNEEENIKRAIKA SLHLYGYAVYGLKSLLRFTR 312 d1030840 2 in 6 275 9 0 -15.30 135,188 MRRIIALLLLTLFASFAYAE LVRLLKINNETHVELRVKIK 313 d1031915 2 in 5 160 8 6 -8.48 85,150 MNYSEGVSTDQIFNHLKAKG SLLTACNLSSTSSRSSPTFI 314 d1030502 2 in 4 143 9 9 -9.52 35,66 MSMGIAFPLSLLILGLLIIL DRVMVVDVDGLKLKVKRIPP 315 d1031275 2 in 4 149 1 4 -1.15 48,70 MEVVIQDYHTRYTSKMSSFS VTYRIFNREKQDSPYYYWDQ 316 d1031478 2 in 4 64 8 9 -8.91 33,55 MITLRDLLGAAIASAAMSLL VVTAIVVYAIAKTERYEREA 317 d1030984 2 in 3 103 6 9 -6.26 27,74 MLELLPLLFGYLIMFFGALG GAYKGGVKPKVKVDMYAWDN 318 d1031555 2 in 3 107 8 8 -8.34 51,74 MVKLFSINFNKTKPYFFDFH PLSTTSTIMGRSVESLITSL 319 d1031872 2 in 3 158 9 2 -17.32 124,146 MMEDILKPEYIAFIIKEREK GIMGKFLEDIASYYLIGYCE 320 d1030284 2 in 2 121 4 9 -4.98 79,114 MKFKFLYFSLSFITYSTVSG PLLFLFILTPVPLAWGLINS 321 d1030505 2 in 2 159 9 1 -9.02 48,70 MNAEYIISNVTAVFLPILLF LVTLHLDFFSTSSSFTCFLY 322 d1030809 2 in 2 410 6 0 -6.28 37,278 MKATGKAYSLLTIIWIIVIS DWNVREPLKATILNSIRRRI 323 d1031298 2 in 2 101 9 5 -14.19 56,78 MTVMNSKDYHRISILKKRII MSNLLSKRSSSMYCHLIHLF 324 d1030052 2 in 1 140 9 8 -15.38 117,139 MFPPPGVYSGEGLAGRASYY FPSVTTLNLGFLAIVIGCSI 325 d1030153 2 in 1 118 0 7 -0.71 54,88 MVTGFPKGLSFMLTYFSTGS TNSMVITIRELTSLNFRFFS 326 d1030293 2 in 1 114 8 9 -8.82 73,95 MAGVFEKTSIFLASTILNDS FSLIKLRTSSPDRQTSFSIF 327 d1030315 2 in 1 108 8 3 -8.33 71,95 MLFYKLSLSPSDRGAFIISQ GLFSSSSLSTPFISRVVAPL 328 d1030348 2 in 1 406 1 0 -1.79 38,164 MEDMKGASFFVTLFLWFIVM IPWDVSKYSTMEIIGKIVGV 329 d1030360 2 in 1 170 7 6 -7.67 82,161 MKMNQLLEAFWYILPAYFAN PLIHWGANIFAYKMGWKKVP 330 d1030477 2 in 1 211 9 2 -25.44 135,166 MEGKSLWRHSDKIQAPGEGK REVLRKAYEELKKRGIMQPK 331 d1030481 2 in 1 1127 9 1 -26.00 142,164 MLSGESEMDEERMDLGIEFE SGETLHEHKGGATLPLEESK 332 d1030537 2 in 1 123 9 5 -10.53 37,66 MLNLSFKSFSTSFLSCIPCS SPFLTSKLTPSTAFTKPLGV 333 d1030593 2 in 1 309 9 3 -16.73 30,236 MLRIKDKRMQYAFIGLFLIF IYGVIDGNVLYEYWELRKSG 334 d1030686 2 in 1 139 1 5 -1.18 69,132 MSFALFLEWCRGIDLANLAR AKIFEPTVTTIYFPFSFTFG 335 d1030837 2 in 1 109 2 8 -2.18 44,77 MCPPLAKIVSILSPMLTSYA FLISNSTKRQRICLIKPLKT 336 d1030986 2 in 1 201 9 9 -10.97 62,105 MTRIHLYLRKRVEEVKERYR VEKAGEIIKGDIEEWLKKMF 337 d1031162 2 in 1 397 9 0 -10.31 186,217 MIEDNMKLKTGIPALDRILG GEEIKCESQTNDKCIFILRR 338 d1031309 2 in 1 154 2 2 -2.52 65,106 MRIVFHSFKNETRFTDSPSS SGLSSSIIGLGSIFFPPTYF 339 d1031327 2 in 1 189 4 1 -4.28 51,91 MSLGIWAWDNPSPSPSCIFL NSLGHEISPRTLWKSFNKSL 340 d1031382 2 in 1 706 9 0 -10.14 29,659 MGVEIAMRKASILLTILLLT EEEQITEQKSEEKEGEIELL 341 d1031386 2 in 1 197 9 3 -19.14 119,141 MKVKDSVEVALELNEKDLYS IYSRDYNGVEFKKGGKALIK 342 d1031449 2 in 1 298 4 2 -4.08 209,250 MNKLERLLEDLKLRLPEREI FRDNGVEVRDRVGRAQVEVL 343 d1031482 2 in 1 143 4 8 -4.59 80,112 MILSLICHGNIPIRIIAITK SCNTAPATRKRRAFIMAWLT 344 d1031586 2 in 1 133 9 7 -15.21 44,123 MKFTLHKGNFTCGSLETCSF SLVLLGAVLGSMGLVVYKLR 345 d1031666 2 in 1 325 9 3 -11.33 152,320 MKRTMVPFLLVLFLASVVKA TIFLILGMISVIIILLLLRR 346 d1031683 2 in 1 102 8 2 -8.62 65,91 MQKPEVSLRATFISSILGGL YLGIPICSYISKAIVLVPSR 347 d1031990 2 in 1 77 0 9 -0.36 47,71 MFGSSLISSRIAIASAALTA ICSILSSTFVIRITSLIIYL 348 d1032037 2 in 1 130 1 8 -1.96 69,107 MYFLASIAAFNSSLMLSALS IITKSKSNFSQSSLVSKDPL 349 d1030472 2 out 27 428 1 0 1.95 46,254 MKVSVITPILPFLFTIVPAA MEHIGKFKLSKDHEAKVKEI 350 d1030983 2 out 9 162 1 5 1.39 53,137 MLGIILEVVMLTLALIVILH GFSLLMGGRKRENELNSENH 351 d1031138 2 out 5 143 1 9 1.57 64,108 MSLYIIFPTNIGTSLAFATS RASSSPGAAIFTPAAAVTSS 352 d1030076 2 out 3 102 0 9 0.47 63,93 MLNPSLDIISLMAYLTSSSL FSSIINLFTTIHLPYLAVKL 353 d1030297 2 out 2 280 9 2 19.63 25,141 MDPLSGFLGSLIWWFLFLYL PIRQRGTVEFVPYPMKQEGK 354 d1030527 2 out 2 154 4 0 4.72 54,152 MTIAITIELTFVPVGPVNSK PASLASPSKVVVIIYALNPS 355 d1030850 2 out 2 199 3 1 3.65 75,128 MNENESFVRVFDKELIALSN AVRSALEESIKKWEIIKNAE 356 d1031239 2 out 2 743 9 1 21.88 714,736 MWLFSIFKKKQDSKGIKEKE ALIVAILVGIWWFGPMIGIS 357 d1031244 2 out 2 108 5 9 5.07 61,90 MSLTPENIRTLRRSSALKSH LFISLRDANLKRPHNLSMQL 358 d1031426 2 out 2 304 6 1 6.97 70,155 MRILRFGPVICMLEGGYDVI MLSDEALHELREIENKLAKT 359 d1031542 2 out 2 145 9 2 12.88 115,137 MKVFRLILMVVTLVIAESFF HFLTLSFVILLLSLSLWREG 360 d1031740 2 out 2 281 9 2 10.98 31,254 MLRGEAFMIDIRDVIGTIII KIKVTTGDYMPEGEIRKILL 361 d1030051 2 out 1 144 2 5 2.50 54,89 MYLSTSIIWGTFSMTNTLGF KRSITEGFSSSLPFPKRPGP 362 d1030122 2 out 1 167 9 4 10.43 125,163 MYFLLTLPFLSSLTAWAILT TMASFILPLTILSSSIPYIT 363 d1030272 2 out 1 104 6 9 6.31 19,54 MLIIFLFLITVRVISSLGLV KFAKLPAPKTLSLLLRGAFL 364 d1030344 2 out 1 104 3 9 3.50 37,69 MLPYPPLVMVRFLGTITTEG RIVKLASKGSSFLVFGFSLR 365 d1030405 2 out 1 422 9 1 13.13 39,257 MKREDALLTLIGVDLLYGYL VPTVDLGPSDYGREVLEVLE 366 d1030452 2 out 1 389 9 0 10.00 149,177 MEVEPMREFYFYGYPTQLSI TIFRTVINELKYLANQFRFK 367 d1030457 2 out 1 105 5 9 5.75 51,95 MGTVIMMKSHFLRSSGSFVG FFFRLSTQSIFILLPPCSSL 368 d1030506 2 out 1 140 2 9 2.21 72,124 MAEIARIRAIFARALPTAFP SSFFSFLSSSSISPPRVANN 369 d1030555 2 out 1 325 8 0 8.57 20,318 MKKILTFVVIILLFAQPVIS LIVGIVVGVSIGIVIKRCPV 370 d1030561 2 out 1 174 9 0 18.42 132,161 MSSQSRASQCAFLPLRGESG LASLSFFARGLFLAISLPSQ 371 d1030619 2 out 1 393 3 3 3.29 200,272 MVEMMESYYDTIPNFRYWDI EWDRDILIYHHRFIEHAEWW 372 d1030639 2 out 1 120 9 9 10.41 34,83 MYFLSNSCGIFGVTTSLSPL RASWITLLSLSLILSSSSIN 373 d1030792 2 out 1 104 3 9 3.71 65,102 MFLSILAGVSNTISLFSRKW YSVIIIPSLSLILTLCGLIN 374 d1030974 2 out 1 69 9 8 30.60 40,62 MIGFMLVFLGTLISAFGQPQ MVLALLLMLTWFLFALLSRR 375 d1031031 2 out 1 112 0 0 0.53 43,66 MQSTSLLKEFSQLSQHSPSP HPLPLYSLPVVVLTLPSFKV 376 d1031034 2 out 1 107 2 8 2.75 28,88 MKYIICSSVTFLKSISAFLT SKYLLPNDASSITLLRASLN 377 d1031110 2 out 1 158 5 7 5.63 72,107 MLFSSFLNSFSLSKMSSLLS GLLTRNHSCPLLCFLMASKT 378 d1031122 2 out 1 158 1 2 1.93 69,143 MTNKSLKVSSTCKGEGESME PWKIVVGVLAVTFGAYLILR 379 d1031124 2 out 1 105 9 9 18.16 53,99 MLSSIKGLNISSNGARNSMF IPSCLAFSLATLSISSLPSI 380 d1031126 2 out 1 116 9 8 17.76 51,73 MFGCGISFPTLTSTLTRSPS STKVAIELAFSQLPSIFLHL 381 d1031201 2 out 1 165 4 4 4.17 117,154 MVLNSLAAFIVNFLASSSPY RGLLSLTLLRASMMNFILTA 382 d1031303 2 out 1 141 9 5 10.00 43,137 MLTTVFGIPNSLNPIPFTVI PRPFSLILVIFPLISTLSEL 383 d1031466 2 out 1 101 4 8 4.03 45,67 MACSRNLEAYFGRFIMILSA ISPSLAILKTLILSVANLGE 384 d1031477 2 out 1 121 2 8 2.38 58,91 MIEYLILTCLAISVTFNMLG GYLPKRAVVDAYLERRREKD 385 d1031507 2 out 1 119 0 7 0.77 59,112 MPSGHFLVIHTLPSFSQTTA KKVFLYVKSFLHIYEYFYSY 386 d1031573 2 out 1 465 5 0 5.00 157,351 MGSSFSIINLTQLREDLKRW ERRIILSLMDLLATILERAG 387 d1031578 2 out 1 110 9 4 14.00 21,47 MTIGSFIIISRSSIFMITSL KNIIPPPLQSPQSLPTHALA 388 d1031602 2 out 1 206 9 6 16.30 32,65 MYMDHFPTFGGYIFSMATYY LSRAYDFEFTMFLWGSGGGV 389 d1031679 2 out 1 112 4 3 4.00 84,112 MTKAPSSMNNYELLLREKSR IHPPPPAPVSFAPIAPAVLA 390 d1031725 2 out 1 102 9 9 9.87 43,88 MPTNRIGAFITWLILKAAPP LPAVSIKTTSIPLALACWIA 391 d1031766 2 out 1 101 5 9 5.94 66,88 MFSPVFGSLDENHPSTLRGI RTFLSLHALHKAKLTMAAQP 392 d1031897 2 out 1 111 2 8 2.78 36,81 MAPPSIMISLASFVSPLTIF SDVTNNQESLNLTKPASSPK 393 d1031926 2 out 1 112 3 8 3.92 36,96 MHILYFLFPKVTFNSFSTPI LLAHTLNLITPSVLTTVECD 394 d1031955 2 out 1 116 9 2 13.07 42,69 MKEMNIAVRNIIRGIIPPGT ESALLRMSIAPQGPSHAALP 395 d1031978 2 out 1 113 8 2 8.28 41,93 MRILVTVGISNSSSVSKNSL YVEFPFLAHITHPPSFQLYH