--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Pyrococcus horikoshii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 55 d1031135 1 in 25 371 1 2 -1.08 76 MARLKPLHEPLYLTAVFRQV VGLEPLDELLEDLDKALEVV 56 d1030802 1 in 12 256 4 3 -4.48 147 MGVVISIANQKGGVGKTTIA NGKASRAFEKLAREVISLVE 57 d1030458 1 in 10 455 0 1 -0.26 37 MNMDWVESLKKKIKDRSAII PSTFFNSKLEYIKLGFGLGG 58 d1032020 1 in 10 483 7 1 -7.96 258 MITMKIEDVYIWDINARWLG AFTARDVAEKIPIALKKIIE 59 d1031582 1 in 8 369 0 2 -0.88 137 MEEVEKEGKKKRNRAFKGNG RIFDVDGNVGEPGKIRVIRR 60 d1031252 1 in 5 259 3 4 -3.36 109 MQFNNKPLIGVVHLPPLPGS NEVSIERATKLAKLVKSLRE 61 d1031939 1 in 5 298 6 2 -6.40 127 MFTNSGVFIMYKILEKKEIA SKLEKLALEKYMEELKAKGV 62 d1030479 1 in 4 449 4 1 -4.60 110 MKLYYDRGTIKIIGSSYVPF PGTAEVRIASRRLSGLKKLN 63 d1030943 1 in 3 102 3 7 -3.80 56 MSPQFHTIAIPLNDKEDWIL ILISVRSWRGLNRLFQLMNT 64 d1031640 1 in 3 313 1 3 -1.32 235 MSFYSPLSSKGLKIGQFIKV GTNVMEGIKIAINLLLDIFR 65 d1030167 1 in 2 317 2 3 -2.00 228 MIDSIRVEGFRGLKELELSS SIEFQRASELRESIGVDLRG 66 d1030899 1 in 2 148 1 5 -1.54 44 MQDSDLTMEVQELKEALKAL KRWLDIIGIPINLDQIKEYL 67 d1031257 1 in 2 441 9 1 -25.33 24 MSRKYLLSLLLVGALVISVV EIINAMKKDLLPNKIKEWHL 68 d1031340 1 in 2 429 3 2 -3.79 76 MKEIYIPITVDHIARIEGKA EMVVRAYDPCISCSVHVVKL 69 d1031568 1 in 2 460 1 2 -1.28 182 MSLEALFNPKSIAVIGASSK ERAVKALSALYKWSKWKAKH 70 d1031670 1 in 2 420 5 2 -5.40 276 MIKLRLPNSHFEDHGDMIRL DKIKVRIVRTRHGIYIGTPH 71 d1031851 1 in 2 472 3 2 -3.92 193 MVNSDIREQLRPFFEPKAVA RGVRALAGLVRYAKYIRGNG 72 d1030110 1 in 1 158 9 6 -13.80 109 MSSLGGLEMSEKVIYLDSSA YTADKRLHQVALSEDLNSFL 73 d1030130 1 in 1 115 9 9 -11.56 45 MGFIPSHKFPGLFLRRICRA RLLRNPLALWEPLIHHRLYR 74 d1030142 1 in 1 218 7 4 -7.79 56 MMFEKLESPKEFSPFKDLSK FTVDEEVKKILFPNREGQQS 75 d1030160 1 in 1 106 4 8 -4.31 93 MINLPKSSISSAIPSKLPSP NPIPSTILSPFPSTKTPAIF 76 d1030204 1 in 1 129 9 6 -9.00 22 MKFILGILIGGCYFLIKIIG PVRWAELPREHPEGPQPPRL 77 d1030270 1 in 1 175 4 4 -4.00 114 MIQIAIAGSSDEKPLEVAVR PKEAAKLALKIGGERSEARD 78 d1030596 1 in 1 175 8 5 -8.67 24 MNKLFGIALFLAGLMLAVGA GLSSGEHQFQIDVSAVAGEC 79 d1030597 1 in 1 201 9 4 -16.00 28 MEKVNRYLIAVFGLLAAFGL IKAYRLGTEPADLVGKCGQG 80 d1030621 1 in 1 457 9 2 -12.00 138 MITMTNWESLYEKALDKVEA STVGIGDTISSSAFVSEFSL 81 d1030735 1 in 1 236 0 3 -1.00 68 MEETKQFEAKMLEHISRIFP NEYGEEIRIKVQDFQKHLQS 82 d1030759 1 in 1 265 6 3 -6.00 127 MVLYFIGLGLYDERDITVKG VEAEYLVEIAGAPREILRVN 83 d1030763 1 in 1 269 9 3 -21.00 22 MRYFHLLSAVLMIVILIYAF VFGLYNGRGEYCNGEFTYKE 84 d1030963 1 in 1 128 9 5 -10.43 100 MPTSITSQPTLRRPLIKASF FSWVFESVRNSGWYEGAFSW 85 d1030998 1 in 1 267 8 2 -8.00 192 MKETIIVVHERPDIYDPVFI RTIMEQQLPRPTHEEEDRGY 86 d1031036 1 in 1 329 9 3 -23.78 27 MKTPIKKVILAIILTIAILT AYLRVLRASKILDYVAREEG 87 d1031080 1 in 1 420 9 1 -17.00 26 MRYAMNKIPALLLVGALIIA WVQPDRLDEVLKTLDEKFPK 88 d1031234 1 in 1 160 3 6 -3.33 33 MHAHRSTPSFSKVIFRLFTI FAGFIWVNRKTGTVSVKGLL 89 d1031235 1 in 1 267 9 3 -40.00 28 MRKKERQIITLVLIVLFGAI YIIQANETATWPIIVTAPTS 90 d1031383 1 in 1 691 8 1 -8.00 23 MRGSIAIIITIALITAPVSA EWKDRNRNGRVESDELMVKF 91 d1031391 1 in 1 699 6 1 -6.22 27 MRRGFIFTLDALLSLILVVT MGNIPGLFTPIRITLRVWRE 92 d1031392 1 in 1 816 9 0 -13.00 26 MRRGFILNSAVLVLLIPLLL TAKEILGTQGTCDLLVGYNC 93 d1031613 1 in 1 445 4 1 -4.00 243 MRKMEELIKYGERFFDELEI AMFTVVAPYIKFENVRIAGK 94 d1031614 1 in 1 139 9 7 -13.08 31 MRKVLSPIYDDRVMIVFSIF SLGMLLGIIIEKERITSYQQ 95 d1031659 1 in 1 120 4 8 -4.91 109 MNDDTVGYEIMGTMVNTDVV LIASIFPHLYFCPYFEALKD 96 d1031728 1 in 1 365 9 2 -26.57 25 MKKFLPLLLSFIILGTAVPT YIHRGREGWKGKKRGSKRVG 97 d1031797 1 in 1 415 9 2 -29.50 22 MKKAGILLIAAILIVSFAVV VLMKVKVEPKSEKKIIIEYE 98 d1031986 1 in 1 162 1 6 -2.00 93 MVRIEVIDIEKPEGVEVIIG ETDEQKKERRELVEKIGYKI 99 d1030689 1 out 113 348 6 3 6.32 189 MSEKMVAIMKTKPGYGAELV YEEAFELMRAGKTGKVVFML 100 d1031963 1 out 20 254 8 2 8.68 108 MSVKTWRKIAIDIIRDFDHN VNIIAANNEELLETILRSIE 101 d1032000 1 out 14 185 7 3 7.43 169 MCRIPVMIVSQPKQLKALSD TFLYSHKYVEESKQLFKLLD 102 d1030614 1 out 12 402 6 1 6.24 317 MAFLKVVPLEKALEVVQSFK PETVESLDEGEEVEVTLFKG 103 d1031702 1 out 12 396 2 2 2.20 311 MMEFKKLVPYREALKLLLDD LEIPEDSEGYRRGEEVWITL 104 d1030518 1 out 11 212 9 3 9.04 168 MDIVDEKWEEYLKNLDEMSK LLFPKPEDMKKILEKLLGGF 105 d1031455 1 out 9 440 2 2 2.28 147 MKCPRCGREYISSIPPFCIC KGKRIYYKLTERGRRLIENL 106 d1031801 1 out 8 253 9 3 10.64 25 MTMAILTFTSASLISFRSSL IEEILPPEYAKRIKEKFIEN 107 d1030894 1 out 7 394 4 3 4.04 147 MVLRCVVCGREYPEDEVRYR KNFQIPEPIEPTLEAFKEVI 108 d1031682 1 out 7 346 5 2 5.12 136 MILMLICSKCGRKFEEKFIL REKGLVKGSSLLLLTGSAKS 109 d1031890 1 out 7 115 4 7 4.27 39 MSPVSTAKLRASFINVSGLG LWITSASWAILEAERRVPPN 110 d1031893 1 out 7 334 7 2 7.12 218 MKVKVGVNGYGTIGKRVAYA FELADKWDSIKKTNKSLGIL 111 d1032005 1 out 6 266 3 3 4.00 204 MRWRIVIDHLIATDIGGRGS PLSLHGKILELLIEIVNIKT 112 d1030159 1 out 5 235 0 3 0.32 91 MLGLKTSIIGRRVIYFQEIT IRLDSGEVKKVIYGDVSLRF 113 d1031116 1 out 4 277 9 3 12.00 207 MKFGIVARRDKEEALKLAYR KFIRFTREIYPKYTIRIKER 114 d1031153 1 out 4 135 1 6 1.96 39 MKPLSVIAIPTLHFFFLLIM KGNISENHEGIVGLAPSLGI 115 d1031362 1 out 4 307 8 3 8.80 199 MNVVIVRYGEIGTKSRQTRS YYPLIALPEEYIKSVKERLG 116 d1031896 1 out 4 309 5 2 5.88 84 MTKMRESEIIRMFIEEFDNH KMERLPILGWEHLKGGDYVN 117 d1030711 1 out 3 350 4 2 4.72 133 MGKLLKPIKDVGIVGYGAYV IKRRKVIDYALYAKARRKYI 118 d1030725 1 out 3 439 7 1 8.00 169 MSYYNSTNGERMNLEEVIVE GTEVYKGKRVRFVPLWKWLL 119 d1030975 1 out 3 246 9 4 13.22 54 MLESLGRIYNSLSTLPYLML ADYIVNNLYEALEVIKGELK 120 d1030097 1 out 2 269 0 3 0.72 154 MLLRACTCPLSLHLEQKLHK HRGLMEGIGEDKTVYLVTPK 121 d1030853 1 out 2 153 0 5 0.41 132 MKYMPFPPFHSKPCDRVVEV ADGKEIIPDYRLTEEIRRHG 122 d1031204 1 out 2 218 4 3 4.00 141 MRVMITDKLRRDSEQIWKKI ITGSKFELAFWEMAWRGGDV 123 d1031785 1 out 2 173 7 4 7.62 136 MDKSKVYHPKTPIIKMPIKD SLFSLKRRRTASIIKPAPRN 124 d1031916 1 out 2 507 3 1 3.92 91 MRGMKFSRKLTLSIFIPLVL RDIVKKLREAVEFIKVEKEE 125 d1030045 1 out 1 335 8 2 8.00 97 MKKVKSLFLLVLGNTEISTI YSPEDVSKKVEELYERLMGL 126 d1030079 1 out 1 184 9 5 13.59 155 MKMRIVAADTGGAVLDESFQ EKGGLLVGYPGIWRLKLRKI 127 d1030092 1 out 1 355 9 2 11.43 341 MKFIVKTQMDMEAVAGNYIR TLVALWTIYEEELRRRGEIN 128 d1030162 1 out 1 435 3 1 4.00 261 MGYAMRLALIDGEHYPDVNR RESVKELARRIVNDKGHRKG 129 d1030180 1 out 1 417 9 2 12.00 151 MRVLISPWGDFRKWKVAKYT GGKEEKAEKVIREILTSRRW 130 d1030208 1 out 1 397 9 1 12.00 261 MMIMLDPFSEKAKELLKGFG EGRRNAPKRGNKRGKKELLH 131 d1030279 1 out 1 110 6 7 6.68 77 MFGLTPFLALGSGALKVSTL GIFHIKKEEEKANLQFPSPL 132 d1030414 1 out 1 321 9 2 16.00 316 MTKVSIIVPVYNTKNYVPRL TLLWILDLFIPIRGILRRLI 133 d1030540 1 unk 1 137 0 6 0.00 20 MVVFFYFYCLWGFFVAFFSR QQVKNINPSRSIKHGNGLIS 134 d1030563 1 out 1 303 4 3 4.00 189 MKYSKLAVKLLKAENDEIIY YIRRSPETIEVDFGELLGEG 135 d1030612 1 out 1 431 9 1 11.50 74 MIIDEVLASVSSIPDPYIRV EIYERIANEKKERKRNDQFS 136 d1030658 1 out 1 385 0 2 0.00 292 MRDLFPALKKFNAYLNTAGL PHFYNNKDDIEKFAEGMESL 137 d1030835 1 out 1 267 3 3 3.50 42 MVKMSKERMVELLQEHFELN HRVVDLFKKRFEEYWEKAEN 138 d1030897 1 out 1 221 9 3 14.00 95 MERLEDLFEKSKFGELILFE NPELDGMELKVNAHTLIASN 139 d1031004 1 out 1 108 3 9 3.59 75 MNRITQDYSNLKFFSVLNAI EFCFLNNREWFWLFHSFVEK 140 d1031055 1 out 1 272 0 3 0.00 247 MVLKLEIFEILLIKAKEIAE RIFKDGQIVFEHNPRLSFRS 141 d1031105 1 unk 1 124 0 6 0.00 124 MTKTSSGLKIMFRKIKLEVV LLIKISIIGIIISTIGLILG 142 d1031241 1 out 1 693 9 1 100.00 690 MKKAGVLLALLMLFSLISFT WLWVGVGVFVLLLFIAALRR 143 d1031469 1 out 1 284 9 3 12.00 90 MGSKLSRYINLEKVLEYIEK ISTFQNTYRALASLEVLLRW 144 d1031530 1 out 1 130 9 8 19.08 117 MLSPHFHPYFAKNFLFSLFI FLSLRVGGRVFSFLITPRVR 145 d1031620 1 out 1 114 9 6 9.05 93 MLHLFHDLSFVFLHIYLYPS FSKFLYFNPNRWKDSRFFTC 146 d1031858 1 out 1 201 9 5 10.29 180 MKKVFIEVRSIAIVQENLSK GESCCTEKGSKCESIFPEPK 147 d1031918 1 out 1 140 0 6 0.83 104 MKGRLKEITEEINKLTSIPN ERITGHKKFFRELLNILLDD 148 d1032013 1 out 1 243 4 3 4.00 177 MLPVARGDFIREFRLRASLR VRAGVLPRDMARELIMDVLK 149 d1032014 1 out 1 107 5 9 5.83 42 MARTLIPNSLAFLSTVCITM EYATAILKSILPRGNSFPSS