--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Pyrococcus horikoshii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 396 d1032057 1 in 16 324 3 3 -3.96 96 MLALGIEGTAHTLGIGIVSE FPLEKTIVKQKFRTDEVEIT 397 d1030582 1 in 11 214 9 6 -10.26 29 MRKGAIGIGTLIVFIAMVLV AAGVIDFTTPPTFGYNVLEL 398 d1030578 1 in 10 237 6 6 -6.75 34 MTVVPRKGAVGIGTLIVFIA APGVIEFTTPSTYTAHVMEL 399 d1030580 1 in 10 207 9 7 -12.04 29 MRRGAVGIGTLIVFIAMVLV APGVIEFTTPSTYTETVVEL 400 d1030581 1 in 10 334 9 4 -9.34 29 MKKGAVGIGTLIVFIAMVLV APGIIEFTTPSTYTQQVIEL 401 d1030583 1 in 9 255 9 6 -11.20 30 MRRGAIGIGTLIVFIAMVLV AGGVIDFTTPSTYTDNLMEL 402 d1031760 1 in 4 235 9 7 -12.67 33 MLVMRKGGLLGFALFLLVLF GEKKIDIKISDVIGRVEVVN 403 d1031957 1 in 4 104 1 9 -1.45 85 MEPSFFVYSLTGYFFRTLPI VFSSMISMIFSFVSTTISIT 404 d1030089 1 in 2 111 1 9 -1.32 110 MLNVFVNIIGVSIVPSSQSW LNTPILIPNSWAFMFLVLRI 405 d1031315 1 in 2 198 9 5 -11.31 31 MALITRKSFILVGVPPIMKS EKAMEGHVIQYGELVGLYER 406 d1031855 1 in 2 139 7 8 -7.36 23 MPKNGISFSLAYLIVIIFPS RYFPNPSLSRSRGTSYVSST 407 d1030170 1 in 1 106 5 9 -5.69 60 MMKALKIIPPRLRVSLTKAP PRNLATSSLLGLEKTSLTSP 408 d1030189 1 in 1 485 2 2 -2.00 128 MVWMRVYVTTVGTSPEAVFN WIEERLIVKNFDYPRILKIK 409 d1030228 1 in 1 296 9 4 -16.00 23 MGKVGAIITIIFLSWIVYSA IPIKDIETTFETDILGSIKF 410 d1030230 1 in 1 140 3 8 -3.65 82 MRAGARRWTLRHGSRPYGAQ KSYNPGGTASGEGARLERVR 411 d1030269 1 in 1 109 6 9 -6.00 105 MNSINPNLSRSNLVYEPGQN WALIFFISFLTSITAFATSF 412 d1030308 1 in 1 148 2 9 -2.67 30 MILWEVELVKWKVLIVFFLG KSITCTGYCKYGEKHGFGLG 413 d1030329 1 in 1 132 9 9 -14.00 118 MNAQEVEDRHWVKSPDTLLS VLPFIWNFYPHSVPIGLTIL 414 d1030338 1 in 1 253 4 4 -4.98 71 MISWEIEELDREIGKIKKHS EELVRFEYEFKGNEPKLRRV 415 d1030354 1 in 1 210 4 6 -4.83 42 MFIRIDFVTLHDNYLRCSTM DAGNECMTDRTEVLIKVVAT 416 d1030356 1 in 1 114 9 9 -9.33 102 MNSLIKSPQDFKSYRFSNIS IFQIYFSSLNHIFPYVKPVN 417 d1030381 1 in 1 173 4 7 -4.00 44 MLKLLKTLVPMFFSFAWMNF SSIPRNSSILTFIFPFSASS 418 d1030461 1 in 1 393 9 3 -18.00 154 MVELEKPRIAIIGLRGIPSK YNWEKVAREYEKLFNIALKS 419 d1030553 1 in 1 248 9 7 -10.00 167 MKIVKNFRDINTLIPGWGDK SLEGEIHIKELISEIENPIE 420 d1030675 1 in 1 213 4 6 -4.00 83 MLDFSIYSFYFETKLGKTLV KNYKEFEIIIPPGIYLKKVS 421 d1030682 1 in 1 475 9 2 -20.00 79 MVVSAVAEDIEEKIRRLREL KDFVPKLLTYESSVVIAKIT 422 d1030685 1 in 1 102 5 9 -5.86 77 MLITLSLGGMNIAKEFNVVV GGNVALTLLPSGSLASRSGF 423 d1030696 1 in 1 121 2 9 -2.00 120 MFFSNLFATPIVGFLRTTPI TAATFLTSFIFLSTILLLSF 424 d1030751 1 in 1 395 9 3 -13.00 26 MVGDLKKAAILIILLFLIPF DVLGRGNLTRNKGKSSEDIK 425 d1030823 1 in 1 183 9 6 -9.51 59 MLILLHSEGASVRDCIRTLI GVSRDTIYNDIQQIIKNVDK 426 d1030833 1 in 1 554 6 2 -6.29 25 MSRMVIVSFLTIFLFLTPIA EPGVIVLLPLISIIISRIRR 427 d1030904 1 in 1 102 2 9 -2.00 94 MKKTLSSIYNIRNMKNQEGI GIASAGLGFAVGLAWMVGQA 428 d1030951 1 in 1 105 0 9 -0.72 66 MLLILRATATPKPAIATPTK IVNPCKKLISNTVITTTPGT 429 d1030957 1 in 1 377 3 3 -4.00 163 MSWVVMEAGLEPDKEELIEA SGEFRKVMRTFMWEEHLGVL 430 d1031076 1 in 1 416 4 3 -4.92 66 MKMYEVKEFSSGKRKLEDYK KNFIITKHMERYLDILNSLG 431 d1031211 1 in 1 118 6 9 -6.00 113 MRGLIMYKLFSLVVFVRVTV IGIFFVMLFLQITTYVLFMI 432 d1031243 1 in 1 287 9 3 -12.00 159 MVDRAGFEPAASALRGASSL LLADEWYSRIVDKLKEVLEG 433 d1031318 1 in 1 101 5 9 -5.67 89 MKCPQSHHAKITSFSFELFF PLIIAMAIEPIKRNLVHVFN 434 d1031339 1 in 1 112 1 9 -1.00 42 MIDSDRNVNFLHSFTPWNIF GSPFSRRTHGYPLSLHSRQT 435 d1031405 1 in 1 111 1 9 -1.11 67 MSDSTLGHYRNRHGIHYLLD VHIKPPPYDLYQVKSLYKVF 436 d1031441 1 in 1 293 9 3 -12.23 259 MGSASIAEKKSPSSENTRRR ALSELAAMINELIHRPLLIK 437 d1031569 1 in 1 149 4 9 -4.00 85 MFSSSLKNSRRSASSISALF DFAGTTITAISTSSGTSKML 438 d1031658 1 in 1 163 8 8 -8.50 42 MPRWKCPRSTFPVDYNFNPL SHFRIKYLINYLNLKEVISG 439 d1031701 1 in 1 107 9 9 -10.00 104 MSSLVSILLMLSNLAETINL GVYAITFLILSPARVFAIIP 440 d1031707 1 in 1 102 9 9 -22.00 90 MTTIMAIKRDIQNIKERSPM CTSPIIQYSFFPTLTVFEAG 441 d1031774 1 in 1 103 8 9 -8.00 95 MIKHWTCNDELVQLLPNSFY STPLSIAFFAMSNFFLIPPL 442 d1031945 1 in 1 158 7 7 -7.30 135 MNLHSKAYLDYPFLICYCSR LSRNWPFINEAIDFNSLWNL 443 d1032063 1 in 1 238 9 5 -14.73 29 MASHKKSLFSKFLLPPFVFF VNYGGGMYFLEEFLKYVREG 444 d1032071 1 in 1 124 9 9 -10.26 57 MLVIVGGTTTGILFLGPRYL RSISLRFTATSTLCVKLRGL 445 d1030501 1 out 14 298 9 4 19.64 28 MVNSMIGAGGIALIILGLFL VGLLRMIQKIRSTPAGEKKE 446 d1031562 1 out 12 266 9 5 19.68 25 MMFATNFFVTSIILLFILIF KLFKSLSDAAEAYMKKKEEE 447 d1031604 1 out 11 249 0 5 0.00 163 MMEKPEGLKLIDENGRRIDG KQREALKEKYLKIAQEVEES 448 d1031680 1 out 7 335 3 3 3.56 130 MVKYVLASAPAKVILFGEHS GGIPMITRVSREGLRIEEVS 449 d1031200 1 out 6 265 3 6 3.55 219 MKFIIEALKRVRERRPLVHN WLYRINENVIRTYAKVREVE 450 d1031480 1 out 5 120 9 9 13.25 97 MERMIAFQYLTAIIMVTLGI TVNAYRHYGTLDLTKLRRLR 451 d1030587 1 out 3 164 9 8 13.00 33 MPDGGELMTAGGPASELIMF GYHRIQVVLENGKERVLIFK 452 d1030813 1 out 3 108 9 9 9.43 76 MLSFERPFISSSTFVRILSR PSREYANSIIAVRRADIHLT 453 d1031836 1 out 3 55 5 9 5.26 36 MISVLTFSTLTLNISSMAFL LFSFSIKEIAFSVTTGLIIT 454 d1032047 1 out 3 370 9 3 18.00 27 MEISTLTTILDTTLAVIFTW AKLIEDKAKPEKIKELIGEM 455 d1030374 1 out 2 520 9 2 36.00 495 MRKILITIVLLLLILPLVKA PKRRRKRRKKPKRRSPLGRV 456 d1030400 1 out 2 176 9 7 13.37 50 MRVKLELISGISIALIGTMM GEVESASSSVLKALNLAKAS 457 d1030436 1 out 2 141 0 9 0.68 131 MRESRGLSDFLRTQIPRLQL LSFRFLLTLLLFYPRPSAWT 458 d1030722 1 out 2 146 8 9 8.47 42 MILSVTFSPSEVPLAGAIAS TFGTSMRTSLKAEGSTIFKA 459 d1031331 1 out 2 108 9 9 19.79 30 MGALLEGLYITILGVTIVFI HNWWLSSLTREIEEIENFNY 460 d1031456 1 out 2 117 5 9 5.39 89 MENFSLPPSPILSPEPVTTK VSLHSFFNPKISAAIGLHLS 461 d1031520 1 out 2 280 3 4 4.00 97 MHIRLTLPFYIYPFHFFRGS LHIRRRLEELAKEGIWRKEK 462 d1030049 1 out 1 155 2 9 2.90 126 MTRCIGWLEVEENEVVILEK GRLPCFMRIVIPNLIPPGHS 463 d1030237 1 out 1 489 0 2 0.00 340 MGILEKLHRFPPRYGPEWGS GIVSFKVKEEDKSGKAIIEL 464 d1030301 1 out 1 899 9 1 61.00 893 MKKLSYILILLILTAPLPLS ALVAGILAILITIITYLKRR 465 d1030339 1 out 1 219 4 5 4.00 139 MGIIEELVSSIPEGGILAII KVGIITKGPNENLIFELFKE 466 d1030387 1 out 1 266 4 4 4.00 99 MEKNYYLTKTEQRIFNVIKH KEWKLLDNLGKDKILGWAYG 467 d1030503 1 out 1 225 9 5 14.00 148 MKLVPSIAYLKVQRQVYVGY IPEDRFEVTLEEITEEESSL 468 d1030507 1 unk 1 356 0 4 0.00 20 MTPIIAILIFTIVIIIGALY EEDRKEKKLDEIKKILEDLG 469 d1030524 1 out 1 246 9 6 12.00 24 MDVWTVILVVVAVIVGSLIA VEKLRKKVEDLEKRLQELEA 470 d1030592 1 out 1 641 9 2 13.33 635 MRKLILVLILLMLPGVSAST LGVILGIGIIILVAWIKARS 471 d1030598 1 out 1 160 1 9 1.14 146 MVTSLNPVVNKMANLIRLLS EGVIFSLILLALSIFHWICT 472 d1030726 1 unk 1 286 0 4 0.00 21 MRKVIILLLLVILAIFGYAY VEYSQVMGFDRVVILLYNSP 473 d1030812 1 out 1 135 0 9 0.11 36 MRSKYIIPLIFALGAVLFRN TKVEEDINGRSKESTNGYRG 474 d1030886 1 out 1 443 0 3 0.00 250 MMEMFEVNELILKKAKELGL SRPVTTPYVLVKEVGITRAT 475 d1030996 1 out 1 112 4 9 4.29 105 MLSLSFGSTSVKFDTTLTQG LPFTAFLLDSPMFIILLPGL 476 d1031006 1 out 1 115 8 9 8.00 26 MVLGLVYSFSCLLQFLLILL KFCWQDNNFIPTHRISHVLS 477 d1031161 1 out 1 156 0 7 0.00 29 MKKAFLVPLFIILSLIGVGA GKLGINTSVGEIGKSFNITL 478 d1031228 1 out 1 204 4 7 4.37 62 MEDRAPSEENVSYIELIRES YDPPGEKEEREIERYIEIEF 479 d1031295 1 out 1 446 4 2 4.00 158 MFSWTGHPFVDGGLVALLLY LAKVEASEETEFYGAGEEVE 480 d1031361 1 out 1 104 9 9 11.02 76 MGDYIVVLEAPIIVKDVESV SLEHAERIAKAVVGRALKKS 481 d1031376 1 out 1 513 9 2 14.00 438 MRRYLFLALLLALLLTPPVS IIWRIDELGPGEEAILQFTL 482 d1031417 1 out 1 728 9 1 50.67 722 MNRYLALLLVLLLLTPSIKL VLILIISFALVLFMMRRIGR 483 d1031471 1 out 1 218 4 5 4.54 70 MREELKQYTTYWKSLGTYKG DAINKEKLEMFCRKLGVNPI 484 d1031473 1 out 1 125 5 9 5.49 71 MLICQFLELFEEVLWWNYVT SMECSNEGYEHLPVCGPLCY 485 d1031505 1 out 1 120 5 9 5.72 84 MNVLSGIGEFLVLFGTVFYF LWEGSVVDKYKEHLKEKEGA 486 d1031853 1 out 1 123 0 9 0.25 107 MPAIAAQSSIAAAKAPLWLM TAGAGIAITARSVSSGSSET 487 d1031931 1 out 1 190 9 7 16.14 161 MLADTLSSSPYSSNFIDLTI WSRTSITAKGMLLSARFLTK 488 d1032052 1 out 1 115 9 9 13.27 104 MTKRTAIPLFASTSPIIKRI CSIGSRILGTFIPAISRALP