Transmembrane helices for pyrho (Pyrococcus horikoshii)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Pyrococcus horikoshii

taxonomy: Archaea; Euryarchaeota; Thermococcales; Thermococcaceae; Pyrococcus
Pyrococcus horikoshii is a hyperthermophile found in the hot waters of the Okinawa Trench. The microorganism can grow at high temperatures, favoring a temperature of 98 degreeC.
The total number of ORF of Pyrococcus horikoshii used in this study is 2064.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	93	49	42	4.5	2.4	2.0	23.6	12.7	10.8
2	88	41	47	4.3	2.0	2.3	19.1	10.4	8.8
3	72	34	38	3.5	1.6	1.8	14.9	8.4	6.5
4	52	27	25	2.5	1.3	1.2	11.4	6.7	4.7
5	20	10	10	1.0	0.5	0.5	8.9	5.4	3.4
6	40	30	10	1.9	1.5	0.5	7.9	4.9	3.0
7	25	15	10	1.2	0.7	0.5	6.0	3.5	2.5
8	24	10	14	1.2	0.5	0.7	4.7	2.8	2.0
9	19	11	8	0.9	0.5	0.4	3.6	2.3	1.3
10	16	9	7	0.8	0.4	0.3	2.7	1.7	0.9
11	8	5	3	0.4	0.2	0.1	1.9	1.3	0.6
12	20	16	4	1.0	0.8	0.2	1.5	1.1	0.4
13	8	6	2	0.4	0.3	0.1	0.5	0.3	0.2
14	1	0	1	0.0	0.0	0.0	0.1	0.0	0.1
15	1	0	1	0.0	0.0	0.0	0.1	0.0	0.1
17	1	0	1	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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