--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 cab50371_1 15 in 58 499 2 0 -2.93 25,51,74,96,140,162,188,226,264,297,329,353,398,432,475 MDVVGLTPIIPLVFAFALPL LINPAVIQAMDYETYVRAAL 2 cab49623_1 15 in 10 493 7 0 -7.01 20,49,96,132,154,183,218,261,290,323,346,394,424,460,482 MSQVASLLIALPLISAFFVP GSDIFAVANYVKNVPLMGVI 3 cab50119_1 15 out 1 479 0 0 0.51 23,57,98,139,178,216,255,277,301,323,364,390,427,452,479 MNAVIMVISPVIFSLLIYIF IRLEANHGVALFALILGLFS 4 cab49294_1 14 in 4 493 1 0 -1.69 39,65,101,123,164,210,232,260,301,323,353,425,457,481 MPKLRRFINVSEDIFVIRNL IFSTIVFIVGVIMMLPRRTG 5 cab50381_1 14 out 63 486 3 0 3.03 24,54,97,146,168,195,225,263,295,320,352,395,435,476 MKPMTPELFLLSSLIPIIVG ILSVVAPLISYRFVTGIGFV 6 cab50154_1 14 out 6 592 3 1 3.53 22,76,99,151,178,206,234,266,305,350,440,514,545,573 MNSTVVILAAAIIYVGLYFT LVIDWYNAWKKPAEEYQAAA 7 cab49148_1 14 out 1 976 4 0 4.42 46,110,136,158,189,215,238,267,293,328,389,432,475,693 MVKTKVKEEKEEKSEKSEGK IAEKEYVMAEVRASAPHHGS 8 cab50380_1 13 in 9 647 4 0 -4.63 50,80,124,168,206,246,271,330,378,415,460,506,644 MKGMELALPLVLFILGMLGG TLMTISLVLLLILLIFAGWG 9 cab49984_1 13 in 7 437 1 1 -1.12 41,73,119,155,187,209,233,258,308,341,363,402,434 MGWFERYFEFEKYGTNMKTE PLMYILALVFVGYFAYLAGV 10 cab49624_1 13 in 2 618 2 1 -2.83 36,88,133,169,218,259,297,351,394,430,474,522,618 MNELLLAVIFSPLVAGFLAW NVQAYAWYLAIILLILAAMG 11 cab50128_1 13 in 1 390 9 1 -15.37 20,45,71,106,128,165,198,230,252,289,319,342,380 MNYIFDLSILLVVAKSLEWL VSMLTALSTPIFFRGVIRKL 12 cab48955_1 13 out 7 492 9 1 10.40 29,69,97,151,186,212,256,295,343,404,426,451,474 MSNAYEMLKNPVALVAFLFT IIVSMITKPPENVEELMKAM 13 cab49822_1 13 out 4 484 8 0 8.11 25,63,91,145,181,207,255,303,346,397,425,451,478 MEARTQILAVLVFYLGFLIS NFIVTFIVAIIATYAIKPEK 14 cab49682_1 13 out 1 455 1 1 1.61 34,56,94,124,148,190,212,252,336,373,395,419,442 MAKRTVYFVFIFIAYTLGIW LVGLMLLLPLGFNNMLLKTK 15 cab49711_1 13 out 1 533 5 0 5.09 38,81,116,147,198,220,253,302,358,393,423,474,523 MKSDSRINLSMRKGLILIPM VLMIISMVSFLLIERIGEEV 16 cab50098_1 13 out 1 695 8 1 8.95 47,87,112,153,177,202,273,313,355,395,457,491,558 MDRKSLIITMSVLLGLNSAI FEGLWTSNKIYSSQDVAIYK 17 cab49639_1 12 in 45 510 0 1 -0.06 52,98,136,158,189,226,265,297,360,404,438,481 MTWLPFIIIIPLFGAFSMPI VPAAKSLWDIMGYVISLMGG 18 cab49698_1 12 in 5 537 7 1 -7.56 23,88,142,177,205,252,294,339,390,417,444,486 MNFGILFGFLIYLVILAYIG TARMKSQAENVFDFAVSSGL 19 cab49137_1 12 in 3 387 1 1 -1.76 35,57,97,119,155,179,227,253,288,314,346,376 MLKNLWFLNFSTFFFFLGIS LPLISIAMAHIPLLWGRNDE 20 cab50204_1 12 in 3 443 3 0 -3.25 23,48,76,114,136,173,216,261,318,341,378,410 MIELSLAEALFLILFTGVIS ETIKERIEEKEEEKERRKVR 21 cab49058_1 12 in 2 375 6 1 -6.51 21,43,65,102,124,161,193,236,276,305,342,367 METLLMLALMLAVAKLSGWV TMVFLTTLITPIMLRKTYII 22 cab49288_1 12 in 2 463 9 2 -13.72 35,67,106,144,180,214,238,286,332,371,406,450 MSDIRKKLWTLAWPAIMGNI FVTAGLFWLVFKRGKWKKIK 23 cab50085_1 12 in 2 511 4 1 -4.70 37,65,112,148,179,201,242,286,331,364,404,473 MSSEVTQALARIARGTGIIF IEKKLGLNLGILKNFLKRFA 24 cab50319_1 12 in 2 468 9 2 -9.44 43,79,118,160,201,223,270,298,344,388,431,457 MSMEKVKAMRREILEGPIEK LAAIIGLAWFLKGSWMRRII 25 cab50320_1 12 in 2 449 9 1 -9.17 41,75,118,156,196,218,269,298,342,385,408,437 MANIERTREEILSGSIEKTL ISALIGFAWFLKGSWMRRIV 26 cab49189_1 12 in 1 452 7 1 -7.11 30,64,103,125,164,186,254,302,326,366,405,429 MEFKYWRIFLLGFGFFGISI FVKRGDVKVGRKAIEYISDL 27 cab50003_1 12 in 1 414 5 2 -5.86 40,63,114,136,169,202,240,272,312,336,379,411 MEEIKPVKEKIFDFWSNFSI IGASIPVFLITMVLYYILSR 28 cab50195_1 12 in 1 401 7 1 -7.03 32,65,95,122,146,180,224,261,301,323,355,390 MDSEKRWTFVLLDTLLMAAG VGIVTLLIVSRMRLPVEEFK 29 cab50365_1 12 in 1 423 9 1 -9.81 62,89,122,156,196,218,256,282,327,360,382,411 MNVFKYLSNKLNEVREMLEI IGNAIVALKIILFERHRYFF 30 cab50583_1 12 in 1 746 5 1 -5.91 30,229,251,273,329,356,416,605,627,649,703,729 MLRKIARVIVIYRHSLAVVT LVTPAILQLEFGRKISKEVR 31 cab49703_1 12 out 14 427 2 1 2.46 41,81,121,147,190,212,257,303,335,361,392,421 MGPGVLVKVDEKVEPRKAIL ILESGMAIGAITAIVLDQLL 32 cab50306_1 12 out 6 405 8 0 8.12 24,59,101,130,158,197,224,262,307,349,372,399 MDMDPWLLLTLILGLAMAWA VTVPVAGLISAIIFKILWIV 33 cab50569_1 12 out 3 380 5 2 5.27 22,44,71,101,127,167,197,241,281,311,343,371 MEVFLELAIILVIAKIFGYL TMVVITTLITPFLLKWAFSK 34 cab49211_1 12 out 1 533 5 0 5.25 36,83,125,173,213,278,320,354,395,417,484,507 MGDFGILSLLPPLVAIVLAI YGKKYGVPHGRVPIYPTEIS 35 cab49885_1 12 out 1 431 1 2 1.85 32,63,115,147,170,205,248,290,318,346,372,418 MSKRDVILRHSVASIIALAL LIFTIIKGKRIMLFLRDIRS 36 cab48937_1 11 in 4 396 3 3 -3.17 29,54,76,120,170,192,239,280,316,359,395 MVEIILLLASFLVVIILIWL RMLLPSLTFLVAGLLYIWLI 37 cab49446_1 11 in 2 379 0 1 -0.88 27,59,109,154,183,221,256,278,320,342,367 MKAYTLVKIGVLAGVIVGAY LSSYATSYALKKVKLQKRTL 38 cab49924_1 11 in 2 483 7 2 -7.61 64,93,137,163,205,255,332,382,411,450,475 MIREVVRITYRELHYRMLRE PLSYIILDSIVIIGSLLIWR 39 cab50104_1 11 in 2 765 4 0 -4.17 31,92,114,170,216,249,309,332,376,418,452 MRYVKLNPFKPRVALPIIIV TVLDRGVFRVSIGRKIYPAN 40 cab49076_1 11 in 1 382 1 2 -1.07 28,59,90,115,151,183,227,260,305,351,373 MRRTLGILMLILSAFLGTIA GLASFLPFSIALIIIGRKVK 41 cab49986_1 11 in 1 470 9 0 -12.83 24,48,91,120,155,183,210,253,282,305,337 MKNKRALFLIISWALIFLPY SCVGKVIFRKGDVEIVKVGE 42 cab49999_1 11 in 1 418 6 0 -6.04 33,56,101,123,160,182,234,273,302,326,388 MNRNFWLFVAGRFISQLGWA ELTSEEESKLVENFPGVPPE 43 cab50049_1 11 in 1 398 5 0 -5.56 31,62,103,125,152,174,238,300,326,366,388 MTKLGRDFWLFAVGRWISIA TIVGIAISVYYWLRYSRILK 44 cab50057_1 11 in 1 372 3 0 -3.68 22,57,102,124,166,191,215,254,289,328,357 MEKLIILILISLGWIFNYSH LAYLVSAVIIGLDLRKTSYK 45 cab50183_1 11 in 1 675 1 0 -1.01 70,95,146,183,216,254,280,346,369,391,419 MKRKPELLMLLVFVVYIALR ISIIPENGTISLVLYKRDSR 46 cab50303_1 11 in 1 428 0 0 -0.77 58,99,138,160,212,271,315,344,366,395,421 MIYSRIGGRNTTLDDPFDLR AFGAGIIATLGFYVIVSDVI 47 cab50189_1 11 out 9 517 2 0 2.10 35,108,169,223,261,292,314,379,426,475,499 MGAIMDFVNWLDGEVWGPPM GLIVLYPIIKQYTEEFIAKN 48 cab49690_1 11 out 4 527 7 1 7.98 66,128,181,207,261,302,369,409,437,479,505 MDRGVIQMEQRDKWATKIGL YYAIKKKYGEELEKNEVIIK 49 cab50593_1 11 out 4 425 1 2 2.00 21,43,71,114,150,192,252,295,331,378,416 MVSELEIIALGVFISVYAAI MLLTVGAGSLVLIARYGGGI 50 cab49490_1 11 out 3 426 9 0 10.21 24,82,116,144,192,214,248,287,316,361,395 MEPATWILFTIGVALILAKI AQRKARIESRKERIEKKKKA 51 cab49798_1 11 out 2 400 3 1 3.87 38,62,120,156,178,203,259,299,330,355,395 MGLEQALVDFFEHMGLLNLT PNVAGVIGTAVVAGVFLSAL 52 cab49188_1 11 out 1 430 6 1 6.60 63,104,126,164,205,262,299,325,355,397,419 MGRFSWKVVMGLAFLGFSRS ALMVLIAMPMIWKIEKLEVF 53 cab50065_1 11 out 1 411 0 0 0.87 35,64,107,137,182,235,276,314,345,379,401 MEEGLKARLIKNAGWLFGAE TVVSQVFLLFLAITKSKDEF 54 cab50184_1 11 out 1 690 9 0 10.53 28,73,115,195,240,281,310,364,386,414,450 MMFLLSILFALLILTRNPWA PRCNYKHPLGMRRVVFYEKE 55 cab49757_1 10 in 24 425 4 1 -4.98 28,69,105,163,214,251,275,329,358,394 MGWLKKYLEFPVLQKILIGL DLTGTAIVAKTEGELKEGII 56 cab49994_1 10 in 8 318 8 1 -8.52 18,56,91,116,146,182,217,260,282,308 MSLTLALLSIVFYIAWNIGA LTGIILSYGTTKLFLTVGMI 57 cab49408_1 10 in 7 369 0 2 -0.75 41,82,116,156,203,243,267,296,339,362 MILYIVLALFDPSYPRKSVQ GIVSSFRTFFVPFSFSFWLM 58 cab49591_1 10 in 4 278 9 1 -18.71 23,48,89,111,139,162,201,223,246,270 MRLNIYAILSILLWSTVASA MLSTLVGLSLILLGIFISQK 59 cab49718_1 10 in 2 339 4 3 -4.24 34,60,98,125,162,196,228,264,298,323 MRWIREFPPSWFASVMGTGA WVVTGIKTLKAIAPRRASRS 60 cab49059_1 10 in 1 384 9 1 -9.31 33,72,114,143,172,215,250,293,341,368 MKVIAEVEIMGKYGIFYRWL VTIGVIRILNPNWMKEFWEK 61 cab49784_1 10 in 1 389 6 1 -6.67 40,62,102,161,186,238,262,318,354,379 MRWRDIPRDAKVYMLYHTII LVGFLSAGLMFIIIKRREAT 62 cab50245_1 10 in 1 398 5 0 -5.00 43,68,90,122,152,208,247,321,359,396 MVMRMALKIRENSITSGLIK TTLSDVFSTLFIVGIAKIVV 63 cab50247_1 10 in 1 440 9 0 -15.08 51,82,121,143,189,259,293,322,350,416 MRYLKRKNVIMLKSREKAKY KEVQPLNFGLFERSRGKGLG 64 cab50282_1 10 in 1 410 9 0 -14.76 53,75,119,141,167,194,258,294,331,397 MRPRELAILQGLQEKSGKIR AVMLYSTVPILFLGFLLSFR 65 cab50367_1 10 in 1 766 2 0 -2.66 29,96,118,144,172,213,245,295,413,455 MRNWRILEPKIALPIVVLVG IRYAYLKDGKVVDRGVFRVV 66 cab49356_1 10 out 3 287 9 1 14.46 23,56,90,113,136,182,204,236,263,285 MSFALGVILALAAAFTWALS KKLGISLVLATLGILLIGLG 67 cab50465_1 10 out 2 314 7 3 7.98 22,54,93,121,143,183,211,251,281,307 MEVAIVTAVFILGLILLIKG LLLVYSIFLYLLAQGKVYIP 68 cab50234_1 10 out 1 392 8 0 8.49 41,67,106,166,191,233,268,307,352,381 MKERKVFGISWNVFLLGLVS LYSAVMNVIAMIMMALLIKE 69 cab50341_1 10 out 1 292 8 1 8.80 29,59,94,122,144,182,204,242,265,289 MTGLQANMLLGILLALTSAF PNWKIFLSLVMVVLGIWLIS