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Transmembrane helices for pyrab (Pyrococcus abyssi)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN
1cab50371_115in58|ali|phd|phdHtm|49920-2.9325,51,74,96,140,162,188,226,264,297, 329,353,398,432,475 MDVVGLTPIIPLVFAFALPL
2cab49623_115in10|ali|phd|phdHtm|49370-7.0120,49,96,132,154,183,218,261,290,323, 346,394,424,460,482 MSQVASLLIALPLISAFFVP
3cab50119_115out1|ali|phd|phdHtm|479000.5123,57,98,139,178,216,255,277,301,323, 364,390,427,452,479 MNAVIMVISPVIFSLLIYIF
4cab49294_114in4|ali|phd|phdHtm|49310-1.6939,65,101,123,164,210,232,260,301,323, 353,425,457,481 MPKLRRFINVSEDIFVIRNL
5cab50381_114out63|ali|phd|phdHtm|486303.0324,54,97,146,168,195,225,263,295,320, 352,395,435,476 MKPMTPELFLLSSLIPIIVG
6cab50154_114out6|ali|phd|phdHtm|592313.5322,76,99,151,178,206,234,266,305,350, 440,514,545,573 MNSTVVILAAAIIYVGLYFT
7cab49148_114out1|ali|phd|phdHtm|976404.4246,110,136,158,189,215,238,267,293,328, 389,432,475,693 MVKTKVKEEKEEKSEKSEGK
8cab50380_113in9|ali|phd|phdHtm|64740-4.6350,80,124,168,206,246,271,330,378,415, 460,506,644 MKGMELALPLVLFILGMLGG
9cab49984_113in7|ali|phd|phdHtm|43711-1.1241,73,119,155,187,209,233,258,308,341, 363,402,434 MGWFERYFEFEKYGTNMKTE
10cab49624_113in2|ali|phd|phdHtm|61821-2.8336,88,133,169,218,259,297,351,394,430, 474,522,618 MNELLLAVIFSPLVAGFLAW
11cab50128_113in1|ali|phd|phdHtm|39091-15.3720,45,71,106,128,165,198,230,252,289, 319,342,380 MNYIFDLSILLVVAKSLEWL
12cab48955_113out7|ali|phd|phdHtm|4929110.4029,69,97,151,186,212,256,295,343,404, 426,451,474 MSNAYEMLKNPVALVAFLFT
13cab49822_113out4|ali|phd|phdHtm|484808.1125,63,91,145,181,207,255,303,346,397, 425,451,478 MEARTQILAVLVFYLGFLIS
14cab49682_113out1|ali|phd|phdHtm|455111.6134,56,94,124,148,190,212,252,336,373, 395,419,442 MAKRTVYFVFIFIAYTLGIW
15cab49711_113out1|ali|phd|phdHtm|533505.0938,81,116,147,198,220,253,302,358,393, 423,474,523 MKSDSRINLSMRKGLILIPM
16cab50098_113out1|ali|phd|phdHtm|695818.9547,87,112,153,177,202,273,313,355,395, 457,491,558 MDRKSLIITMSVLLGLNSAI
17cab49639_112in45|ali|phd|phdHtm|51001-0.0652,98,136,158,189,226,265,297,360,404, 438,481 MTWLPFIIIIPLFGAFSMPI
18cab49698_112in5|ali|phd|phdHtm|53771-7.5623,88,142,177,205,252,294,339,390,417, 444,486 MNFGILFGFLIYLVILAYIG
19cab49137_112in3|ali|phd|phdHtm|38711-1.7635,57,97,119,155,179,227,253,288,314, 346,376 MLKNLWFLNFSTFFFFLGIS
20cab50204_112in3|ali|phd|phdHtm|44330-3.2523,48,76,114,136,173,216,261,318,341, 378,410 MIELSLAEALFLILFTGVIS
21cab49058_112in2|ali|phd|phdHtm|37561-6.5121,43,65,102,124,161,193,236,276,305, 342,367 METLLMLALMLAVAKLSGWV
22cab49288_112in2|ali|phd|phdHtm|46392-13.7235,67,106,144,180,214,238,286,332,371, 406,450 MSDIRKKLWTLAWPAIMGNI
23cab50085_112in2|ali|phd|phdHtm|51141-4.7037,65,112,148,179,201,242,286,331,364, 404,473 MSSEVTQALARIARGTGIIF
24cab50319_112in2|ali|phd|phdHtm|46892-9.4443,79,118,160,201,223,270,298,344,388, 431,457 MSMEKVKAMRREILEGPIEK
25cab50320_112in2|ali|phd|phdHtm|44991-9.1741,75,118,156,196,218,269,298,342,385, 408,437 MANIERTREEILSGSIEKTL
26cab49189_112in1|ali|phd|phdHtm|45271-7.1130,64,103,125,164,186,254,302,326,366, 405,429 MEFKYWRIFLLGFGFFGISI
27cab50003_112in1|ali|phd|phdHtm|41452-5.8640,63,114,136,169,202,240,272,312,336, 379,411 MEEIKPVKEKIFDFWSNFSI
28cab50195_112in1|ali|phd|phdHtm|40171-7.0332,65,95,122,146,180,224,261,301,323, 355,390 MDSEKRWTFVLLDTLLMAAG
29cab50365_112in1|ali|phd|phdHtm|42391-9.8162,89,122,156,196,218,256,282,327,360, 382,411 MNVFKYLSNKLNEVREMLEI
30cab50583_112in1|ali|phd|phdHtm|74651-5.9130,229,251,273,329,356,416,605,627,649, 703,729 MLRKIARVIVIYRHSLAVVT
31cab49703_112out14|ali|phd|phdHtm|427212.4641,81,121,147,190,212,257,303,335,361, 392,421 MGPGVLVKVDEKVEPRKAIL
32cab50306_112out6|ali|phd|phdHtm|405808.1224,59,101,130,158,197,224,262,307,349, 372,399 MDMDPWLLLTLILGLAMAWA
33cab50569_112out3|ali|phd|phdHtm|380525.2722,44,71,101,127,167,197,241,281,311, 343,371 MEVFLELAIILVIAKIFGYL
34cab49211_112out1|ali|phd|phdHtm|533505.2536,83,125,173,213,278,320,354,395,417, 484,507 MGDFGILSLLPPLVAIVLAI
35cab49885_112out1|ali|phd|phdHtm|431121.8532,63,115,147,170,205,248,290,318,346, 372,418 MSKRDVILRHSVASIIALAL
36cab48937_111in4|ali|phd|phdHtm|39633-3.1729,54,76,120,170,192,239,280,316,359, 395 MVEIILLLASFLVVIILIWL
37cab49446_111in2|ali|phd|phdHtm|37901-0.8827,59,109,154,183,221,256,278,320,342, 367 MKAYTLVKIGVLAGVIVGAY
38cab49924_111in2|ali|phd|phdHtm|48372-7.6164,93,137,163,205,255,332,382,411,450, 475 MIREVVRITYRELHYRMLRE
39cab50104_111in2|ali|phd|phdHtm|76540-4.1731,92,114,170,216,249,309,332,376,418, 452 MRYVKLNPFKPRVALPIIIV
40cab49076_111in1|ali|phd|phdHtm|38212-1.0728,59,90,115,151,183,227,260,305,351, 373 MRRTLGILMLILSAFLGTIA
41cab49986_111in1|ali|phd|phdHtm|47090-12.8324,48,91,120,155,183,210,253,282,305, 337 MKNKRALFLIISWALIFLPY
42cab49999_111in1|ali|phd|phdHtm|41860-6.0433,56,101,123,160,182,234,273,302,326, 388 MNRNFWLFVAGRFISQLGWA
43cab50049_111in1|ali|phd|phdHtm|39850-5.5631,62,103,125,152,174,238,300,326,366, 388 MTKLGRDFWLFAVGRWISIA
44cab50057_111in1|ali|phd|phdHtm|37230-3.6822,57,102,124,166,191,215,254,289,328, 357 MEKLIILILISLGWIFNYSH
45cab50183_111in1|ali|phd|phdHtm|67510-1.0170,95,146,183,216,254,280,346,369,391, 419 MKRKPELLMLLVFVVYIALR
46cab50303_111in1|ali|phd|phdHtm|42800-0.7758,99,138,160,212,271,315,344,366,395, 421 MIYSRIGGRNTTLDDPFDLR
47cab50189_111out9|ali|phd|phdHtm|517202.1035,108,169,223,261,292,314,379,426,475, 499 MGAIMDFVNWLDGEVWGPPM
48cab49690_111out4|ali|phd|phdHtm|527717.9866,128,181,207,261,302,369,409,437,479, 505 MDRGVIQMEQRDKWATKIGL
49cab50593_111out4|ali|phd|phdHtm|425122.0021,43,71,114,150,192,252,295,331,378, 416 MVSELEIIALGVFISVYAAI
50cab49490_111out3|ali|phd|phdHtm|4269010.2124,82,116,144,192,214,248,287,316,361, 395 MEPATWILFTIGVALILAKI
51cab49798_111out2|ali|phd|phdHtm|400313.8738,62,120,156,178,203,259,299,330,355, 395 MGLEQALVDFFEHMGLLNLT
52cab49188_111out1|ali|phd|phdHtm|430616.6063,104,126,164,205,262,299,325,355,397, 419 MGRFSWKVVMGLAFLGFSRS
53cab50065_111out1|ali|phd|phdHtm|411000.8735,64,107,137,182,235,276,314,345,379, 401 MEEGLKARLIKNAGWLFGAE
54cab50184_111out1|ali|phd|phdHtm|6909010.5328,73,115,195,240,281,310,364,386,414, 450 MMFLLSILFALLILTRNPWA
55cab49757_110in24|ali|phd|phdHtm|42541-4.9828,69,105,163,214,251,275,329,358,394 MGWLKKYLEFPVLQKILIGL
56cab49994_110in8|ali|phd|phdHtm|31881-8.5218,56,91,116,146,182,217,260,282,308 MSLTLALLSIVFYIAWNIGA
57cab49408_110in7|ali|phd|phdHtm|36902-0.7541,82,116,156,203,243,267,296,339,362 MILYIVLALFDPSYPRKSVQ
58cab49591_110in4|ali|phd|phdHtm|27891-18.7123,48,89,111,139,162,201,223,246,270 MRLNIYAILSILLWSTVASA
59cab49718_110in2|ali|phd|phdHtm|33943-4.2434,60,98,125,162,196,228,264,298,323 MRWIREFPPSWFASVMGTGA
60cab49059_110in1|ali|phd|phdHtm|38491-9.3133,72,114,143,172,215,250,293,341,368 MKVIAEVEIMGKYGIFYRWL
61cab49784_110in1|ali|phd|phdHtm|38961-6.6740,62,102,161,186,238,262,318,354,379 MRWRDIPRDAKVYMLYHTII
62cab50245_110in1|ali|phd|phdHtm|39850-5.0043,68,90,122,152,208,247,321,359,396 MVMRMALKIRENSITSGLIK
63cab50247_110in1|ali|phd|phdHtm|44090-15.0851,82,121,143,189,259,293,322,350,416 MRYLKRKNVIMLKSREKAKY
64cab50282_110in1|ali|phd|phdHtm|41090-14.7653,75,119,141,167,194,258,294,331,397 MRPRELAILQGLQEKSGKIR
65cab50367_110in1|ali|phd|phdHtm|76620-2.6629,96,118,144,172,213,245,295,413,455 MRNWRILEPKIALPIVVLVG
66cab49356_110out3|ali|phd|phdHtm|2879114.4623,56,90,113,136,182,204,236,263,285 MSFALGVILALAAAFTWALS
67cab50465_110out2|ali|phd|phdHtm|314737.9822,54,93,121,143,183,211,251,281,307 MEVAIVTAVFILGLILLIKG
68cab50234_110out1|ali|phd|phdHtm|392808.4941,67,106,166,191,233,268,307,352,381 MKERKVFGISWNVFLLGLVS
69cab50341_110out1|ali|phd|phdHtm|292818.8029,59,94,122,144,182,204,242,265,289 MTGLQANMLLGILLALTSAF

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