--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 70 cab49919_1 9 in 19 343 2 3 -2.18 31,80,113,149,176,223,272,310,333 MYEEYVKKRMTAIFILSLLL VTSFLGAPMFLYLLLKMEGR 71 cab49240_1 9 in 11 468 9 2 -9.76 50,91,133,164,190,259,305,364,435 MGARDIIYAIEKWFPEVERP EEIAREQISEMFPALRRFFA 72 cab50391_1 9 in 2 572 9 1 -13.26 45,71,233,255,296,318,470,518,551 MIKVPQEKISIFVKADLDPR TLMARFMSVGEGGMILHLLG 73 cab49020_1 9 in 1 456 1 1 -1.95 86,115,144,186,220,267,295,317,350 MKAKIEVLVFLGALILGILS QLIKEFYGRFKIYVNRKMLK 74 cab49096_1 9 in 1 372 2 1 -2.25 47,111,148,176,220,258,303,339,372 MNMKELIEGILLGTLTGLTP RVARVTYMGVLMFPILVETI 75 cab49480_1 9 in 1 448 9 1 -12.46 29,97,119,148,177,234,274,313,337 MKSLIDKKLLVIIFIAYTFI KLEEYKTVFKKDGVVIFIRK 76 cab49764_1 9 in 1 267 9 1 -16.24 28,52,82,108,135,158,193,234,258 MRRKSEGIALALIGMLLYGL TLWHLLGFIFITIGTLNLTR 77 cab50678_1 9 in 1 335 6 1 -6.52 24,54,81,147,169,191,256,285,321 MAKRYLLIGAGILIVIILLW WTPTLIGGALAFKNKDVFSS 78 cab50520_1 9 out 4 409 2 0 2.24 115,152,181,216,256,287,317,365,403 MVKGIYECISCGHREVRDST AIIIWIIFVICAVPVPFSQK 79 cab49134_1 9 out 2 384 1 2 1.05 31,65,102,155,191,230,266,305,376 MERDAKVLVIANAVGQLFLQ ATAILYIFATAMFYAFFIKH 80 cab50355_1 9 out 2 280 9 2 9.34 53,84,109,132,168,190,216,245,268 MDETRKAELILILISAIWGS GALLILIAVWLEISRENLIS 81 cab49018_1 9 out 1 338 4 1 4.99 35,78,112,142,174,233,262,287,312 MKDTPLLIPILLVFFVSVGL IRKSISNVIANVLSIGKSRE 82 cab49377_1 9 out 1 302 9 3 12.21 30,55,83,109,153,203,234,256,286 MISDILNILSNTLISMVPLT VAIIMKKVKMPRALGKPYIK 83 cab50492_1 9 out 1 394 1 1 1.01 18,71,98,120,158,209,238,262,386 MIPLILGVIVGILTSYTDIK LVSYFFGDILWWLVLKVAGL 84 cab50379_1 8 in 30 299 9 2 -9.41 21,85,110,151,177,232,264,299 MIAFTILALGIVLFLPPYLD KVNVRLFFASIIVFAMSFLG 85 cab50180_1 8 in 18 331 3 3 -3.16 25,80,124,164,209,257,295,318 MKKVTLALILASITSLVLAL LFGAPFFAYLLMRRKRGELY 86 cab50654_1 8 in 15 477 6 0 -6.52 42,212,234,294,326,348,410,460 MRWVDIKDSLANFWFEFRRQ LTFVLLGTALDRVLNPRLRR 87 cab50522_1 8 in 8 295 8 1 -8.16 18,70,109,132,172,194,223,292 MIYELLAFALSLALTPYIAK VLASIAIEFFLGIVALLIQL 88 cab49975_1 8 in 6 661 4 0 -4.10 307,366,447,472,533,582,624,656 MLKVVALVGNPNVGKTTIFN VYNLILATVVGIIAYHIGAV 89 cab50537_1 8 in 2 317 9 2 -20.69 26,49,71,94,116,139,174,197 MKSELKSKAVILVIYGLILF RREIEKRKMLVKKALGGILN 90 cab49001_1 8 in 1 295 7 3 -7.51 45,69,111,133,159,197,237,284 MVSFKISERLIRESRYSKAM TIIQLIGASMIIGGAILARS 91 cab49113_1 8 in 1 289 5 0 -5.70 37,73,100,135,173,228,250,274 MRDVETKQRRGELVLILAIF IIFFLTAQQLLLRGYSGGIK 92 cab49439_1 8 in 1 276 4 0 -4.44 34,65,87,110,160,206,235,267 MIEEYLLRAFLASLMVGTLL GLATILLATIYGALALGRKV 93 cab49441_1 8 in 1 477 9 2 -12.33 213,247,276,300,329,392,421,446 MVKEAKLNDYMGDEVWYVSS LRIYLNYLRSIAKPLKKVIK 94 cab49510_1 8 in 1 343 4 3 -4.40 39,82,115,155,218,240,264,322 MGVVRLEKEKIVWIALIAII IDAWKEIKLKQPSKARHSQD 95 cab49634_1 8 out 63 321 9 3 9.47 25,87,114,154,197,251,283,321 MKVIYALIGLILLYAYVSII WTRVFAASIVGALLLALGVM 96 cab49201_1 8 out 3 267 9 1 11.39 42,71,100,137,160,190,224,260 MLGDFFRKYFVNPIKYNTGY VIFILGFAPGTRNLLRMLMG 97 cab50435_1 8 out 3 253 0 5 0.02 29,58,93,116,166,189,214,246 MIDTAILLKAFVTGVVTGTL AVVMLILAIRMILKGLGYSV 98 cab48953_1 8 out 2 336 1 1 1.31 87,111,168,205,227,285,307,333 MACSLGVISLPHDVHTGISN LKIATFIAVISFLLGALTKG 99 cab49051_1 8 out 2 263 9 1 14.90 43,73,104,135,157,188,222,253 MDVHQFLWEYFIRPMYTREG ILGLGPAIRDPAQMVLQIAC 100 cab50314_1 8 out 2 254 9 2 12.55 28,58,80,128,159,199,221,251 MNETLILAFKLGLFVAFMTS IITFGFFLGFYLMLFLDTAL 101 cab49019_1 8 out 1 327 9 0 12.16 24,46,88,121,157,197,281,312 MMETSEKVFLTLLLTFLALA DAFKLATLFILPFLGRDSNE 102 cab49376_1 8 out 1 329 4 3 4.91 33,73,117,146,191,239,278,319 MLNRETIFEVAISIVVAFLV LALAIPYAYRMLLKRLKEGR 103 cab49625_1 8 out 1 309 8 3 8.42 23,89,113,151,187,248,278,309 MLRVIVNAILILLYATFVGF AKFYWKWPTIIAALGAILAS 104 cab50137_1 8 out 1 503 6 1 6.55 25,98,188,222,264,300,325,357 MGRGKVELLWLLLIAFIVNF NFSDNFRVAFHWWEFYILEV 105 cab49067_1 7 in 18 310 9 0 -10.64 30,118,159,190,248,270,296 MKKEWIIKKILSLLIPIFIV NFLADITYTIIDPRVRIMGG 106 cab49659_1 7 in 18 332 9 0 -9.51 30,120,161,216,274,296,320 MANLKKFLIRRILTFIPTII YVTINLIVDILYAVIDPRVR 107 cab50655_1 7 in 18 353 8 0 -8.09 29,146,187,231,289,311,337 MGYGRYLAYRLTNAFIVLLI LADLAYGFLDPRVKVGVSQR 108 cab50445_1 7 in 16 330 9 0 -9.23 30,125,164,210,267,289,315 MGFKQYLKRKIVIYFLTFLF FIIDIVYALIDPRVRVSYEE 109 cab48948_1 7 in 15 277 3 1 -3.83 35,94,133,160,208,230,263 MNEKTAFMLKKIAFYAFIFT AMLFIFFARRYLVTMWGITL 110 cab49850_1 7 in 15 334 7 0 -7.99 32,127,166,212,269,291,316 MMSGIKRYLLRKTMIYILTF IDLLYAIIDPRVRISYTEEG 111 cab49283_1 7 in 4 224 9 2 -10.55 18,47,78,110,134,161,220 MSTFGAFLTLALYAFYSYLY GMALNGVFTAFLLPALIEVI 112 cab50338_1 7 in 4 253 2 3 -2.81 29,51,107,136,164,193,220 MLILIPPYIIAIVSTLLMIA SFLLSTVSVRLITSLPHEET 113 cab49834_1 7 in 3 258 2 2 -2.62 35,57,128,153,188,228,253 MVSVKGKIIFEIFVFPVVLF AIIMLSIAVAMLFTVWSILR 114 cab49835_1 7 in 3 269 9 4 -14.63 34,66,118,151,199,233,262 MSGPKMKSGKRLIIEAVMVP LLISLALIPLVIKIFIQLHS 115 cab49342_1 7 in 2 255 0 0 -0.26 29,68,116,152,184,214,237 MFFRYPLRVISSIIVGLVFL ISLGVFKWAEKITRMMGYGG 116 cab49581_1 7 in 2 257 4 4 -4.75 43,79,130,164,186,211,247 MKSMRVLMTMVYRELKRFIR SLLAVIFVGIAAVEFRKATI 117 cab49327_1 7 in 1 218 2 3 -2.52 22,57,104,144,166,195,217 MRKLVLFALVWFVFVVWGLE SAQRTGSLKVPIFVWLVSMV 118 cab49330_1 7 in 1 249 4 0 -4.76 23,45,91,118,154,181,234 MERGKAIVLSAIGIEIMTSS VMAVQGYAYMKIPNSEMMGG 119 cab49341_1 7 in 1 272 1 2 -1.32 39,88,131,167,196,219,256 MEATELRALLGVARKSWKIF LGILAYRWSERKAREVGLKS 120 cab49916_1 7 in 1 237 8 4 -8.25 35,58,95,117,165,198,237 MKAEFKYLLLIILLSFGLSS SRELSVIAGILLIGIGVWVL 121 cab50095_1 7 in 1 257 4 2 -4.66 21,63,100,132,160,195,240 MFNLALTVLSIALVIATLGF PSLAAILYAQGKTTELSEYI 122 cab49077_1 7 out 13 248 4 3 4.30 33,76,111,134,186,208,239 MGGRDYTLYLFAALGSFLIV LMGISLGIFVVLRWLIGKAK 123 cab49103_1 7 out 12 412 3 3 3.94 33,156,224,263,291,346,396 MIKRRDFLRTILMTGLALFV VMFMLAQKYIRSGLTLGGLK 124 cab49159_1 7 out 3 378 4 1 4.17 27,89,131,153,199,327,373 MSVLGTLTNVILGILGFWAV MVLSLILLGINLLPTIRGFV 125 cab50671_1 7 out 3 659 8 0 8.86 394,433,475,523,561,584,613 MFKPEEIVKVEIITLARFRD EGRKFEPFAAKREVSELEIE 126 cab48996_1 7 out 2 249 0 0 0.43 33,67,96,147,170,198,225 MMNLRFADRGDNVSPFLYLI LGKREDMERFWWYILMGGRR 127 cab49321_1 7 out 2 287 5 1 5.20 36,76,98,138,164,202,282 MDIRVITMGLPMNPLTAFTL SGIAIIMLGVVYLGLRLLKS 128 cab49413_1 7 out 1 215 8 1 8.38 23,47,72,116,147,172,200 MNSAPFIILGGALAWVFLYF LVMLKFALPRIKIEEEEGPK 129 cab49553_1 7 out 1 420 2 1 2.47 38,84,219,268,314,355,399 MSDFMVVLKKELKDMFRDKG TAKFFSTEKLLTAKLRLKRK 130 cab49572_1 7 out 1 440 0 2 0.20 25,112,221,259,296,319,363 MKKIILPLLVFAFIASPVLA KVVDIEGLTLIVVREGKGGE 131 cab49695_1 7 out 1 323 8 0 8.50 39,69,92,121,165,199,311 MGLMTIAVKEFEVNIRTKRF TVFLVVSLALSYYKFVRMDL 132 cab49890_1 7 out 1 329 9 5 10.54 33,82,149,202,225,254,309 MEVNKVVFSVIVLIILFLAL NVAIEMLREWKIQNKARGSQ 133 cab49980_1 7 out 1 292 4 1 4.67 36,90,137,166,188,232,261 MVAIKSFGSAINKVIENPKV EVNLLNLQQSVITDVRADRR 134 cab50438_1 7 out 1 355 9 1 16.86 25,52,74,107,138,165,195 MDMLEIAMVITTLIKLATSG RMLWNDKEWSLLMNMFSQPQ 135 cab50574_1 7 out 1 756 5 0 5.69 134,190,225,274,303,356,739 MKRKLYYLTLATISVIEYIP VIETGKTYKKRYLHSIFEGR 136 cab50606_1 7 out 1 353 1 0 1.54 51,84,113,135,166,195,330 MITDLVPYLNLLSRLILFIS LNPKTFEEREVKMIEKEFKK