--- -------------------------------------------------------------------------------- --- --- All proteins with at least 3 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 229 cab50670_1 3 in 32 158 1 9 -1.00 72,113,153 MNVMEPIVYVALGMALGAGL AMAETMAIFGLVGAIILIMS 230 cab48982_1 3 in 10 362 1 1 -1.75 273,295,341 MQRSILPRALIMKVSVIVPT LVGIGASFIVRYIFNRHVTW 231 cab49945_1 3 in 3 424 6 4 -6.59 279,343,410 MKAVILAAGYGTRMGEKAKG STFRVIVTVYLVKTRYAQDE 232 cab50068_1 3 in 3 377 7 3 -7.59 84,124,313 MANRKKIFMVLTNPFKPDPR TRLRDKWTWDKNRESIRKAY 233 cab50040_1 3 in 2 140 3 9 -3.32 71,93,115 MSPSEYQFIKPADFVVMALG LDWDELLHYASLKMDTILVN 234 cab50113_1 3 in 2 201 9 3 -9.10 54,76,108 MTRMHLYLRKRVEEVKERYR VERAGELIKGDIEEWLKKVF 235 cab50406_1 3 in 2 270 9 2 -9.80 26,65,87 MKNRMILQTIAGIFFVLIII FYHATIPDEKRLVEMIKSQT 236 cab50507_1 3 in 2 342 9 1 -10.42 26,172,278 MRRVVYFTLLAIGVAFLIMP RILDRIIKEVKVAGGLENEW 237 cab50509_1 3 in 2 253 1 0 -1.80 31,53,224 MMKMRKEVISGIMLITIGSI EIVNKRVRIKAKKLGGAEKW 238 cab49274_1 3 in 1 103 9 7 -13.89 20,49,71 MLRTATYLLFLNGFLLLAYG IVHDILGYIQKKYGEEVKLS 239 cab49725_1 3 in 1 142 7 4 -7.92 29,52,107 MIKLKAQISIDFLIALTLIT LQINSPDFWIENDGGSIRVE 240 cab49939_1 3 in 1 112 7 9 -7.14 26,50,109 MNFLGIVPKVARISIPYAIL FFVLLFSIIFKYFYGIFMLV 241 cab50096_1 3 in 1 479 2 0 -2.64 87,126,175 MKGKHRGSAMVFKSITTIAK NKMLKEDEKRRLINALRKVR 242 cab50125_1 3 in 1 203 4 8 -4.87 40,122,171 MSLKLELKRKALHMTGLSVP DDNFSNQLAIALALYLAGVR 243 cab50389_1 3 in 1 305 6 1 -6.88 26,80,235 MIKDNRLSYAFLGLFALFLL SVYGVIDGHVLYEYWEIRSE 244 cab50430_1 3 in 1 322 3 0 -3.29 44,150,315 MKRLILIMFTLTLLLPPSMA LIVGIVVGVSIGIVIRKCPV 245 cab50505_1 3 in 1 411 9 1 -9.41 29,248,344 MKRETYLWTLIVLGLLHSYL LVPVVDVGPSDYVKEVLRGL 246 cab49622_1 3 out 7 114 9 9 15.97 22,44,93 MISSYYFGAIALVLIGLYAV AIILYEKYGTLNIEEIRRLR 247 cab49618_1 3 out 5 168 9 5 12.32 25,47,77 MAEASRISKFLYTFIVTFII VEGASENITRPFEKFLKVIF 248 cab50555_1 3 out 3 287 0 1 0.64 26,119,200 MLNVKKGIIVVVLFLIGFLS NRGYKKGWDECNKRKTKIKK 249 cab49146_1 3 out 2 148 9 4 12.11 39,77,112 MGIQLLNSWALFRLVGEMRK KKKEDKRKTLFVIAVEFRDK 250 cab49619_1 3 out 2 84 7 9 7.68 20,43,72 MMSVNVYLILIAIATLLSMY VYAVLSFAGVIAFARYLEGG 251 cab49640_1 3 out 2 117 9 2 15.94 25,47,94 MIAFQYLTAIIMVALGIYAL TVNAYRHYGTLDITKLRRLR 252 cab49727_1 3 out 2 210 2 1 2.85 136,158,184 MDCPTSMTSTRVRRVRVKDS KLYNRDYDGVEFDRSGKAIV 253 cab49894_1 3 out 2 285 2 1 2.75 24,76,194 MNKIIPLCLFTLLLVGLSGS KLYKVGRENWVELTIDMQKY 254 cab49434_1 3 out 1 185 3 0 3.12 67,96,167 MRWKLITLGSLSFAIALLQA GLFYGAFIDEVVKVVMKSEL 255 cab49496_1 3 out 1 265 9 2 9.98 37,104,164 MLILLLLIQITILMKTLGVL EERIAKIMSIVDMYRRLELL 256 cab49549_1 3 out 1 127 9 8 9.15 47,94,120 MVDGMKERLPLLAIVAIAGA LALLAMIILQMAFYAYYSRR 257 cab49551_1 3 out 1 115 9 3 19.24 57,84,106 MKKGLFLYFLGLGLAIVKPP LFGAVLATIGLITYKLSRWF 258 cab49644_1 3 out 1 167 3 6 3.81 19,47,77 MSFIAAFIWSYFMWLVLTAG WPKSSEPVSGPFEKWARRLG 259 cab49836_1 3 out 1 248 9 1 9.82 32,67,95 MDMISYESVKLLTEFVSFVA ANPGSLPQTVWGTIQREFQE 260 cab50100_1 3 out 1 331 9 4 14.93 253,276,311 MRISLITTVKNEENSIRAFL YTYGFLKRFKYKKTTKELTR 261 cab50375_1 3 out 1 114 9 9 17.50 26,69,92 MSILFYIGSALIVIGALCDL RSGIVKWKPKVDHLAEARGD 262 cab50677_1 3 out 1 242 9 6 9.82 23,60,85 MVNPISLAYRLIIFVIFAFL ALGEREMNMLKREFRPIITS