--- -------------------------------------------------------------------------------- --- --- All proteins with at least 2 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 263 cab49286_1 2 in 26 411 6 2 -6.62 306,397 MKTLNVEDIIEKVANGEIKL LSLLAAIAAKHLARAHKMLG 264 cab50118_1 2 in 17 74 8 0 -8.56 30,64 MNRSRLKQLLSLNLVALGVV TLVVDVAVTGLALSFLLEGG 265 cab50485_1 2 in 8 350 9 5 -14.39 295,334 MRLELLLLIIFIWDGYFFLR LSLHIYGYAVTLKNKISQLF 266 cab50441_1 2 in 6 341 2 2 -2.16 169,321 MRLRRITGLRVISMGGAEMH KAVKRGLNPDNPRFLEKVVR 267 cab50029_1 2 in 5 99 5 2 -5.03 40,96 MDLNMTGITGDIGIGAIVGF VGILPGSTAFIAAFYLGFKK 268 cab50358_1 2 in 5 155 1 4 -1.02 32,151 MDERLKEILSMVLTVILVFS IVFPKIGIISIKVRELLGIG 269 cab50454_1 2 in 5 739 9 1 -12.05 27,326 MQFRKKIILMAIMSAVITMA AAQELKDMVGRMRQIVGKFK 270 cab49291_1 2 in 3 157 9 6 -21.59 123,145 MILERILKPRYIALILEEIP GVAGKIIEKVFMYYIIGYCK 271 cab49922_1 2 in 3 118 1 8 -1.75 51,99 MEVIVQDYHTMNTSRISPFS SSSSFFFLLKNPSNLPPPYK 272 cab50297_1 2 in 3 480 5 0 -5.64 84,340 MIYNRSVVSAVAEDIEEKIR KDFVPKVLTYKSSVVLARAT 273 cab50538_1 2 in 3 997 2 1 -2.00 265,855 MMRKVIALALLVALGVSLAL EFKLFLGKLREVVGSEIRAK 274 cab50561_1 2 in 3 1204 2 0 -2.96 60,227 MASNFTIKENLYIQQFSILI NEMKAVRILEKAIKELQGEE 275 cab49419_1 2 in 2 366 8 2 -8.06 27,69 MRRLLGVLVAMLVALSIASI LILQIHKELRKKIHKSRGER 276 cab49420_1 2 in 2 361 9 0 -10.69 22,196 MRSLLSILLISILVLSALPA AKELIRQIHRGRVGWRGKGK 277 cab49704_1 2 in 2 152 9 3 -12.26 40,62 MLYEESVSSKLLNLVLLVTL EEVSKVLSMLGIPKVPYNKV 278 cab50127_1 2 in 2 83 9 9 -11.60 28,68 MRGETLIIAGIIMIILGFML MILALVLMISWFLLALLSRR 279 cab50384_1 2 in 2 152 9 7 -11.44 123,145 MVSKMVNLSMFSTQSSTILG EGVIFSLFLLALAVLHWVLT 280 cab50548_1 2 in 2 147 1 9 -1.29 64,113 MLFFIFGIISGLFSASHNDY DRIISEEDAKEFSSSFFSLP 281 cab50599_1 2 in 2 307 3 1 -3.42 69,107 MRDTINFREIEWLLELLNKY RTRFSRMIKEDGSGYKSILE 282 cab49017_1 2 in 1 225 9 0 -12.51 22,188 MDKYRLVVILIILVGISGVI TLYVNSEKRNLPLKVLEVRS 283 cab49125_1 2 in 1 296 2 1 -2.00 23,135 MGKVGAIIGIIFLSWLLYSA VPIKDIETTFETNILSGIKF 284 cab49215_1 2 in 1 409 9 3 -16.56 100,398 MRTDYTISNLCRLHWRLDRF IIPTGVLMLVIHKRYVYQRQ 285 cab49226_1 2 in 1 443 9 0 -14.59 44,131 MISFSKSHSLENKRYKLEKR VILEVKVNPGGKEVVNLEYE 286 cab49693_1 2 in 1 727 9 0 -11.03 579,721 MKMKITLLAFVLLAMLTTPI VLILVLAFGLVIFMMRRLGR 287 cab49714_1 2 in 1 433 6 2 -6.67 27,412 MKKKLEHLAVVGIITLVFLV FKNSIVGVQENKVIIINISS 288 cab49803_1 2 in 1 601 2 0 -2.50 30,78 MEAYLARIFGLFFYALLAQG HAYINLSYSIRDSSDNLLES 289 cab49814_1 2 in 1 135 6 6 -6.51 52,112 MDRKLYRAKDERMFLGVLGG PKEILMGGILVVLGLYLIVR 290 cab50038_1 2 in 1 136 9 3 -17.20 72,94 MKGRRKRGLKTSLNNLGKCE TVYKHFYGQKVGKTSPRKPR 291 cab50066_1 2 in 1 384 0 0 -0.27 83,354 MSENVLMILNNHYTHDPRVT SKKLLKIYDILLEGDSNADR 292 cab50114_1 2 in 1 89 6 9 -6.94 25,68 MAQEGFLVAGIWILLGTALM LMVNSIGGLILAKHMERRGN 293 cab50457_1 2 in 1 212 9 4 -10.71 140,167 MDIVAENIEEYVKNLDEFAK LLFPKPEDMKKILEKLLGGL 294 cab50482_1 2 in 1 186 2 8 -2.69 119,171 MLSKLRPAVKEPLERTASYL VAVLSWVTFIQRVYEARKRL 295 cab50515_1 2 in 1 537 9 1 -41.37 29,510 MKGGNTMKRELILVVFVSIL QKRRRRKRPKPRRRSPLGRV 296 cab50651_1 2 in 1 177 9 2 -17.26 28,141 MGLKDALKYPPIFVGFLLLL KAKEETGDRDVQGTPRREGR 297 cab49101_1 2 out 11 453 1 1 1.38 138,243 MKRGIYAVLLVGVLIFSVVA HADIEAILKKYQEEILKNMQ 298 cab50494_1 2 out 9 435 2 0 2.62 45,260 MGGGAMVRVTIITPVIPFVL EQISKFKLSKDHESQVKKIT 299 cab49643_1 2 out 6 88 3 9 3.97 28,77 MTVEQMFLYATLLIGIAGLI YALLSYIGTLIIAKYLQGGL 300 cab50278_1 2 out 6 77 5 9 5.43 42,67 MIIPLVLGIVVGYAIRGKVK ITLALTSVVGSVTLAKIMWR 301 cab49620_1 2 out 4 131 5 5 5.71 27,72 MNILAGIGEFLVLFGTVFYF EHLERKEREEEEEKEEGEGE 302 cab49964_1 2 out 4 112 3 9 3.28 43,102 MVLGVSVLVLASLGALSMLI VLALLMLLLAWSVLSRREFP 303 cab49978_1 2 out 4 111 9 9 19.85 76,98 MITSGTLRSSLMFLAPTKNI VLIPQSQNFKAKLRFSPSFV 304 cab50526_1 2 out 3 171 1 6 1.14 100,144 MHEMNPIFEAFWYILPAYFA PVIHWLANVFAYRMKWKNVP 305 cab49180_1 2 out 2 280 9 2 19.63 25,141 MDPLSGFFGSLLWWFLFLYI PVRQRGTVEFVPYPVRQENK 306 cab49638_1 2 out 2 118 9 9 17.30 27,117 MVEVFGYWDALYFILVFIIG DYVSYLLMTTAFILILMLIR 307 cab49965_1 2 out 2 156 5 4 5.53 81,133 MESNSFWVIFESELRRIIRA VYGTGIKGLWRGFQILRWFW 308 cab49141_1 2 out 1 221 3 5 3.81 70,96 MMLDDVIKAIELERRKFEER LLKVALGEEDEDRGNLKGRN 309 cab49344_1 2 out 1 265 9 1 11.15 45,197 MYQEFFTLVPIDIEEIDRAL TSDHGRHVLDIRRIENNKKK 310 cab49433_1 2 out 1 153 0 4 0.00 115,148 MSFLEVLFLSLIPTFEGRYA ILGGLISIALTTIPTLGIIK 311 cab49443_1 2 out 1 451 6 0 6.00 119,342 MSVPQDVSIFTAYNANVDAI GLGDTISAGAFITYVNYLKR 312 cab49498_1 2 out 1 118 4 9 4.53 53,84 MYTIQYLAIAMIFILMGYTI KLNRELAIRLKEIEDKIERK 313 cab49534_1 2 out 1 209 9 6 30.00 33,67 MYMDHFPTLDGLIIRMGIYY AYDFEFKMFSWAGGGGGGGF 314 cab49699_1 2 out 1 114 5 7 5.62 46,83 MNFLSLKLFESLNIGLITLT KEYYVDEEILAYDQELVEGR 315 cab50036_1 2 out 1 149 8 5 8.10 108,139 MLFRGKYLVKVLEINEPCKE LVMMDLAKAIQYFLIGYVRA 316 cab50152_1 2 out 1 214 5 4 5.33 23,104 MSVEFSTMILLIMVLAAVST PESIEDDVRNIIRFVKRMAN 317 cab50162_1 2 out 1 111 8 9 8.18 30,103 MLEILSFMFFTGGGLVMLYI APILLMGPGLVIGLWTYAKA 318 cab50235_1 2 out 1 454 2 1 2.91 32,219 MFMVSNRLLIIVLSLIILSW LTPPCNSKTGLCITTTNPEQ 319 cab50410_1 2 out 1 241 3 0 3.48 29,231 MEVNLVQKKFLMGIVVGLLT GLIVTIIETGLNVDIGFIYV 320 cab50452_1 2 out 1 340 7 0 7.84 131,328 MPIYEARVKVGISSSWVTSK DLTNEGRKIVNKLLKYGLVS 321 cab50535_1 2 out 1 394 9 2 12.50 23,45 MRGVSFFLTLFLWFVLLSVI HWRSCKEPVDLAMVKVEARL 322 cab50630_1 2 out 1 390 9 3 13.29 133,160 MGKFYIASEEDIKAGKTTDV KAREIREYVLEQARRFNLTI