--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 33 cab49817_1 1 in 25 393 0 2 -0.56 99 MVIFRIKNYVEKDINLPWDQ VGLEPLDELIEDIDNALGVV 34 cab50199_1 1 in 16 257 0 3 -0.60 146 MGTVISIANQKGGVGKTTIA GKASKAFEKLAREVISIVEG 35 cab50216_1 1 in 16 375 9 2 -10.84 263 MRFFLKTTILMGRGSLENVK FNPVEPSVEDIKNLYLRALH 36 cab49370_1 1 in 12 338 1 3 -1.76 109 MEGIAHMENIIFSPLSSLPS GRISIEDVPEELLLQVLGEI 37 cab50646_1 1 in 10 484 7 1 -7.60 260 MVGSMKMEDVYIWDLNAKWL AFTALDVANKIPLALKRILE 38 cab49555_1 1 in 9 342 1 3 -1.60 109 MITIDGSYGEGGGQILRTSI VFDLDGEVGKPGKVKVVRRV 39 cab49289_1 1 in 7 316 3 3 -3.33 48 MEREEFVEFVERILRRIGFK EEVRDADELLEIINELKEAK 40 cab49972_1 1 in 6 259 3 4 -3.96 108 MDLGSKPLIGVVHLLPLPGS NEVSLERATRIAKVVKSLRG 41 cab50488_1 1 in 6 453 4 1 -4.08 110 MKLYYDRGTIKVIGNSYVPY EVRISSRRLSGIKKLESLDD 42 cab48950_1 1 in 3 426 9 1 -20.57 25 MDRYLKVIATILLGLVVVAS VLSELGPKLHQLFKEQGVEE 43 cab49158_1 1 in 3 171 0 4 -0.54 113 MIQIAIAGSSDEKPFEKAVE FTEDPDEAARLAVEIGGRKD 44 cab49499_1 1 in 3 287 2 3 -2.04 209 MRLDKVRVENENDKELIAFI GTNVIEGIKIALNLFVDLFR 45 cab49015_1 1 in 2 239 0 3 -0.64 123 MRRAVVLFSGGLDSTASLYW HRGLIEGIGEDKTVYLVTPK 46 cab49048_1 1 in 2 241 2 3 -2.68 93 MEGKPVSIVLPEIENAVFIE MHEQMEKARRSVEKQYETMY 47 cab49276_1 1 in 2 472 5 2 -5.28 194 MVNSDIREQLRPFFEPRAVA RGVRALAGLVRYAKYVRGNG 48 cab49565_1 1 in 2 460 1 2 -1.28 183 MSLEALFNPKSIAVIGASSK ERAVKALSALYRWSKWKAKH 49 cab49940_1 1 in 2 386 1 2 -2.00 107 MISEENVKLAEELIRKGYNE RAFVFKVRDLAVIAEEIPQA 50 cab49154_1 1 in 1 199 6 4 -6.00 130 MDILSLFKIGETVLVEYSGT ERGVIIKKAINKEIIGEVIP 51 cab49205_1 1 in 1 250 9 3 -36.00 23 MKRVLGASILLVMLLFFSFK HSEAPGATMAKIVPPGSEGE 52 cab49331_1 1 in 1 176 4 5 -4.00 28 MIDMNSKRIITGFFIVGLLL PFDIPEELAENFSRISRELK 53 cab49346_1 1 in 1 218 3 3 -3.33 194 MEIDEIVNREKISVLIEYTS FSIMKSVFPNIKGSVGTIKW 54 cab49608_1 1 in 1 260 4 4 -4.38 76 MVKIPKSHPRYWSLLYREKI HIKDRLTKLAEEGIWRRERL 55 cab49632_1 1 in 1 429 9 2 -11.23 382 MFNIIVRARKDAKAIQYINE DLLEKLNYLPEVMKNRKVSG 56 cab49671_1 1 in 1 266 9 3 -21.56 225 MVEITVNFYIEAAGNDKKAV LSGLATLVNELIHRPLLIAN 57 cab49721_1 1 in 1 804 9 1 -13.00 26 MRRAFILNSAVLILLIPVLL TAKAILGEQGACDLLYGYNC 58 cab49729_1 1 in 1 690 9 1 -24.00 23 MRKVLGFIIVLVLILTPVSA KWNDVNKDGEVEVDELTVKF 59 cab49779_1 1 in 1 428 3 2 -3.79 76 MRNLYIPITVDHIARVEGKG AEMVVRAYDPCISCSVHVVK 60 cab49840_1 1 in 1 298 9 2 -38.00 22 MKGKSLIILLIIGLVILAVT GHRVSLFYCNATSLDAINEL 61 cab49893_1 1 in 1 328 9 2 -29.50 26 MRRIKVTLILPMLIIGTIIG AYLRILHASKILDYIARVEG 62 cab49963_1 1 in 1 320 1 3 -1.11 273 MAELKLEAREYMEKIVKKLK KKEAVGEREWALLESELAPI 63 cab50004_1 1 in 1 224 7 4 -8.00 68 MGMFSEELLREARPIWKKFL WDIAYGGIEYGGDKTSKGED 64 cab50018_1 1 in 1 113 6 7 -6.75 34 MRYSTSTGKPKSNSPQFFFL KNSIKELIKQVEIRKVKISS 65 cab50105_1 1 in 1 110 6 7 -6.46 40 MVVLDTSIVIDRVKRKDEIK KDKDFLDIARVSNLRVKVID 66 cab50107_1 1 in 1 268 5 4 -5.96 211 MQIREARPEDRPFIEDISRL LYLWDETENPNVLVFRKEVR 67 cab50158_1 1 in 1 371 9 2 -12.00 287 MESLKIALVSDWYFPKIGGV VVAERTERLYRGELGDSDTN 68 cab50267_1 1 in 1 334 4 2 -4.00 198 MVEMAVRKPPITTREYWAPG NQIKAMWKVLGVEAILPKPE 69 cab50436_1 1 in 1 265 7 3 -8.00 144 MITPEEIAELVVQIRREHGL VKDGLMEATDGARIIRWGWR 70 cab50542_1 1 in 1 225 3 4 -3.11 63 MLTIEEVIGLIPEGGIMSII VGIMTKGPMEGTIFELFKEG 71 cab50292_1 1 out 111 348 7 3 7.56 190 MSEKMVAIMKTKPAYGAELV YEEAFELMRAGKTGKVVFML 72 cab49296_1 1 out 29 284 0 2 0.88 65 MSFAKLEFFNPFSRSIKDRA EMLLGEAQGKISSRTSQLQG 73 cab49202_1 1 out 17 254 6 2 6.44 109 MSVKAWRKIALDIINDFDQN VNLVAVNDEELLKMVLSLIE 74 cab49379_1 1 out 16 356 5 2 5.18 344 MRGRVLSFTLFGESHGKGVG VMAFVLADHLLFRRVWELKS 75 cab49368_1 1 out 14 317 2 3 2.68 79 MIESFRESFGRTLVEIGRKN KVYSKVLEVVKNEDDEVLEG 76 cab49442_1 1 out 11 395 0 2 0.88 309 MEFKKLMPYREALTLLLNDV LEVPEDSEGYRRGEEVWITL 77 cab50617_1 1 out 10 406 4 2 4.50 388 MILQVALDLTDIEQAISIAE LLMATFQKTEKDMRKKHATL 78 cab49308_1 1 out 9 334 7 2 7.16 218 MKVKVGVNGYGTIGKRVAYA FELADKEESIKKTNKSLGIL 79 cab50071_1 1 out 9 298 3 2 3.92 279 MSRPIVSVIIPTYNRANLLR LLKLALDSRTVEYIKRILST 80 cab49463_1 1 out 8 335 2 3 2.20 130 MPRLVLASAPAKIILFGEHS GGTPMITRISKEGLRIEEVR 81 cab49662_1 1 out 8 439 1 2 1.80 145 MKCPKCGREYKAEIPPFCIC RRGKRIYYKLTEKGIRLVDN 82 cab50218_1 1 out 7 336 7 2 7.64 98 MKIRLEHGAGGELMEELIRD TGIGGKRFLEPPIGDPVPRV 83 cab49813_1 1 out 5 196 0 4 0.62 165 MEIKLPRPKTKGNVSLEEAI RKVLGVDGDPLYVFPIGKPG 84 cab49747_1 1 out 4 306 5 2 5.60 199 MNSVVVRYGEIGTKSRQTRA PLIALPDEYLEEVKEKLFNR 85 cab49824_1 1 out 4 277 9 3 12.80 207 MRFGIVARRDREEALKLAYR KFVRFTREIYPKYTMRIKER 86 cab50078_1 1 out 4 459 9 1 11.36 152 MILVSRFIDREDELEFLRKR LEDNSHIWDLRDFEELKDVL 87 cab50288_1 1 out 4 212 4 4 4.80 151 MKMKTLFLLIKLAKMGAIGK PVKLRDALNLKDGDKVRIEV 88 cab50464_1 1 out 3 354 9 2 20.00 22 MNSIVPLIITIAGVSIAIYY KEEREDKLEEIKKILKDLGV 89 cab48961_1 1 out 2 336 8 2 8.00 92 MESLFLLVLGNTEISTIPGI EDVSEKVEELYERLMRMKSL 90 cab49063_1 1 out 2 146 9 6 9.32 79 MVFVVAIIGGIIWGPKIDPE GIGGAVMAVAYAISRAEIFG 91 cab49193_1 1 out 2 497 7 2 7.88 165 MGTRTKVAIIGAGITGASIA LNVPGSEIGIGDVKVLTRGE 92 cab49467_1 1 out 2 166 9 6 15.65 41 MSTIISKFSVLTSVLVGDTA MPYISVEDFKIAIRKALEER 93 cab49719_1 1 out 2 156 9 4 9.19 52 MTSFMIDSTLIIEHLKGNPI EAEKIRLISTKEELEKALHN 94 cab50395_1 1 out 2 155 0 6 0.00 140 MGFSVSASAAIILISFLVGL HYNGTAYVVDSVSIQCPLGV 95 cab50584_1 1 out 2 899 9 1 61.00 895 MKKAMALILGLILGSLVQPS AIGAGILAIVITLLTYFKRR 96 cab49000_1 1 out 1 437 0 2 0.00 358 MKVLLLGFEFLPVKVGGLAE SAERYVKAYTGSIDRAFDFI 97 cab49010_1 1 out 1 244 6 3 6.00 96 MTKAVAFVGFKKSGKTTTIE GMLSAMKGYREGKKIEIIIN 98 cab49122_1 1 out 1 396 4 2 4.00 210 MESTRRIYASPSYEVYGLSK PRGNYKVPDYVRKFLEKREE 99 cab49126_1 1 out 1 483 6 2 6.00 295 MGILEKLQSFPPRYGPEWGS SGIVSFKLEGDANGKAIIEL 100 cab49518_1 1 out 1 415 3 1 4.00 112 MPTTEELIARINKILDDISI KFEKFMPKSERAKKFLELLQ 101 cab49521_1 1 out 1 448 0 2 0.00 247 MDEVGEMEELIKYGEKFFDE FMTTAITPYIKFENVKIAGK 102 cab49780_1 1 out 1 261 9 3 10.73 217 MGKLRIGFYALTSCYGCQLQ FNGHDERIEKMVEKVFQEVK 103 cab49905_1 1 out 1 196 0 4 0.00 135 MFSHFIKRFERSMLGLSNAP RAVREALKESIKKWQSSSNR 104 cab49962_1 1 out 1 143 9 5 14.10 85 MGRILMRFIDSNIFLYAMIK IKEIYTFDRHFYNLDVKVVQ 105 cab50142_1 1 out 1 405 4 2 4.00 169 MSLQYKYKIFINIFALKLHM PRDVRVLNGFEVLEFLYSIT 106 cab50174_1 1 out 1 271 6 3 6.46 44 MTVVKMSKERMVELLQEHFE VVDLFRKKFEEYWKEAEEAK 107 cab50176_1 1 out 1 237 9 3 18.00 106 MTVFVINGEEPNVEGVKYVA KSKYGRRAVVETFSRLMEVR 108 cab50209_1 1 out 1 361 0 2 0.00 182 MLFDPRPKTEKKDLYDRERE KRDGEYIIPDPLVKEIVANL 109 cab50529_1 1 unk 1 191 0 3 0.00 21 MKKRILLVVITLLLSISLGY NVGNECMTDGCEIVVKVIGT