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Transmembrane helices for pyrab (Pyrococcus abyssi)-- Low Reliability Report

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

33 cab49817_1 1 in 25 |ali|phd|phdHtm| 393 0 2 -0.56 99 MVIFRIKNYVEKDINLPWDQ

34 cab50199_1 1 in 16 |ali|phd|phdHtm| 257 0 3 -0.60 146 MGTVISIANQKGGVGKTTIA

35 cab50216_1 1 in 16 |ali|phd|phdHtm| 375 9 2 -10.84 263 MRFFLKTTILMGRGSLENVK

36 cab49370_1 1 in 12 |ali|phd|phdHtm| 338 1 3 -1.76 109 MEGIAHMENIIFSPLSSLPS

37 cab50646_1 1 in 10 |ali|phd|phdHtm| 484 7 1 -7.60 260 MVGSMKMEDVYIWDLNAKWL

38 cab49555_1 1 in 9 |ali|phd|phdHtm| 342 1 3 -1.60 109 MITIDGSYGEGGGQILRTSI

39 cab49289_1 1 in 7 |ali|phd|phdHtm| 316 3 3 -3.33 48 MEREEFVEFVERILRRIGFK

40 cab49972_1 1 in 6 |ali|phd|phdHtm| 259 3 4 -3.96 108 MDLGSKPLIGVVHLLPLPGS

41 cab50488_1 1 in 6 |ali|phd|phdHtm| 453 4 1 -4.08 110 MKLYYDRGTIKVIGNSYVPY

42 cab48950_1 1 in 3 |ali|phd|phdHtm| 426 9 1 -20.57 25 MDRYLKVIATILLGLVVVAS

43 cab49158_1 1 in 3 |ali|phd|phdHtm| 171 0 4 -0.54 113 MIQIAIAGSSDEKPFEKAVE

44 cab49499_1 1 in 3 |ali|phd|phdHtm| 287 2 3 -2.04 209 MRLDKVRVENENDKELIAFI

45 cab49015_1 1 in 2 |ali|phd|phdHtm| 239 0 3 -0.64 123 MRRAVVLFSGGLDSTASLYW

46 cab49048_1 1 in 2 |ali|phd|phdHtm| 241 2 3 -2.68 93 MEGKPVSIVLPEIENAVFIE

47 cab49276_1 1 in 2 |ali|phd|phdHtm| 472 5 2 -5.28 194 MVNSDIREQLRPFFEPRAVA

48 cab49565_1 1 in 2 |ali|phd|phdHtm| 460 1 2 -1.28 183 MSLEALFNPKSIAVIGASSK

49 cab49940_1 1 in 2 |ali|phd|phdHtm| 386 1 2 -2.00 107 MISEENVKLAEELIRKGYNE

50 cab49154_1 1 in 1 |ali|phd|phdHtm| 199 6 4 -6.00 130 MDILSLFKIGETVLVEYSGT

51 cab49205_1 1 in 1 |ali|phd|phdHtm| 250 9 3 -36.00 23 MKRVLGASILLVMLLFFSFK

52 cab49331_1 1 in 1 |ali|phd|phdHtm| 176 4 5 -4.00 28 MIDMNSKRIITGFFIVGLLL

53 cab49346_1 1 in 1 |ali|phd|phdHtm| 218 3 3 -3.33 194 MEIDEIVNREKISVLIEYTS

54 cab49608_1 1 in 1 |ali|phd|phdHtm| 260 4 4 -4.38 76 MVKIPKSHPRYWSLLYREKI

55 cab49632_1 1 in 1 |ali|phd|phdHtm| 429 9 2 -11.23 382 MFNIIVRARKDAKAIQYINE

56 cab49671_1 1 in 1 |ali|phd|phdHtm| 266 9 3 -21.56 225 MVEITVNFYIEAAGNDKKAV

57 cab49721_1 1 in 1 |ali|phd|phdHtm| 804 9 1 -13.00 26 MRRAFILNSAVLILLIPVLL

58 cab49729_1 1 in 1 |ali|phd|phdHtm| 690 9 1 -24.00 23 MRKVLGFIIVLVLILTPVSA

59 cab49779_1 1 in 1 |ali|phd|phdHtm| 428 3 2 -3.79 76 MRNLYIPITVDHIARVEGKG

60 cab49840_1 1 in 1 |ali|phd|phdHtm| 298 9 2 -38.00 22 MKGKSLIILLIIGLVILAVT

61 cab49893_1 1 in 1 |ali|phd|phdHtm| 328 9 2 -29.50 26 MRRIKVTLILPMLIIGTIIG

62 cab49963_1 1 in 1 |ali|phd|phdHtm| 320 1 3 -1.11 273 MAELKLEAREYMEKIVKKLK

63 cab50004_1 1 in 1 |ali|phd|phdHtm| 224 7 4 -8.00 68 MGMFSEELLREARPIWKKFL

64 cab50018_1 1 in 1 |ali|phd|phdHtm| 113 6 7 -6.75 34 MRYSTSTGKPKSNSPQFFFL

65 cab50105_1 1 in 1 |ali|phd|phdHtm| 110 6 7 -6.46 40 MVVLDTSIVIDRVKRKDEIK

66 cab50107_1 1 in 1 |ali|phd|phdHtm| 268 5 4 -5.96 211 MQIREARPEDRPFIEDISRL

67 cab50158_1 1 in 1 |ali|phd|phdHtm| 371 9 2 -12.00 287 MESLKIALVSDWYFPKIGGV

68 cab50267_1 1 in 1 |ali|phd|phdHtm| 334 4 2 -4.00 198 MVEMAVRKPPITTREYWAPG

69 cab50436_1 1 in 1 |ali|phd|phdHtm| 265 7 3 -8.00 144 MITPEEIAELVVQIRREHGL

70 cab50542_1 1 in 1 |ali|phd|phdHtm| 225 3 4 -3.11 63 MLTIEEVIGLIPEGGIMSII

71 cab50292_1 1 out 111 |ali|phd|phdHtm| 348 7 3 7.56 190 MSEKMVAIMKTKPAYGAELV

72 cab49296_1 1 out 29 |ali|phd|phdHtm| 284 0 2 0.88 65 MSFAKLEFFNPFSRSIKDRA

73 cab49202_1 1 out 17 |ali|phd|phdHtm| 254 6 2 6.44 109 MSVKAWRKIALDIINDFDQN

74 cab49379_1 1 out 16 |ali|phd|phdHtm| 356 5 2 5.18 344 MRGRVLSFTLFGESHGKGVG

75 cab49368_1 1 out 14 |ali|phd|phdHtm| 317 2 3 2.68 79 MIESFRESFGRTLVEIGRKN

76 cab49442_1 1 out 11 |ali|phd|phdHtm| 395 0 2 0.88 309 MEFKKLMPYREALTLLLNDV

77 cab50617_1 1 out 10 |ali|phd|phdHtm| 406 4 2 4.50 388 MILQVALDLTDIEQAISIAE

78 cab49308_1 1 out 9 |ali|phd|phdHtm| 334 7 2 7.16 218 MKVKVGVNGYGTIGKRVAYA

79 cab50071_1 1 out 9 |ali|phd|phdHtm| 298 3 2 3.92 279 MSRPIVSVIIPTYNRANLLR

80 cab49463_1 1 out 8 |ali|phd|phdHtm| 335 2 3 2.20 130 MPRLVLASAPAKIILFGEHS

81 cab49662_1 1 out 8 |ali|phd|phdHtm| 439 1 2 1.80 145 MKCPKCGREYKAEIPPFCIC

82 cab50218_1 1 out 7 |ali|phd|phdHtm| 336 7 2 7.64 98 MKIRLEHGAGGELMEELIRD

83 cab49813_1 1 out 5 |ali|phd|phdHtm| 196 0 4 0.62 165 MEIKLPRPKTKGNVSLEEAI

84 cab49747_1 1 out 4 |ali|phd|phdHtm| 306 5 2 5.60 199 MNSVVVRYGEIGTKSRQTRA

85 cab49824_1 1 out 4 |ali|phd|phdHtm| 277 9 3 12.80 207 MRFGIVARRDREEALKLAYR

86 cab50078_1 1 out 4 |ali|phd|phdHtm| 459 9 1 11.36 152 MILVSRFIDREDELEFLRKR

87 cab50288_1 1 out 4 |ali|phd|phdHtm| 212 4 4 4.80 151 MKMKTLFLLIKLAKMGAIGK

88 cab50464_1 1 out 3 |ali|phd|phdHtm| 354 9 2 20.00 22 MNSIVPLIITIAGVSIAIYY

89 cab48961_1 1 out 2 |ali|phd|phdHtm| 336 8 2 8.00 92 MESLFLLVLGNTEISTIPGI

90 cab49063_1 1 out 2 |ali|phd|phdHtm| 146 9 6 9.32 79 MVFVVAIIGGIIWGPKIDPE

91 cab49193_1 1 out 2 |ali|phd|phdHtm| 497 7 2 7.88 165 MGTRTKVAIIGAGITGASIA

92 cab49467_1 1 out 2 |ali|phd|phdHtm| 166 9 6 15.65 41 MSTIISKFSVLTSVLVGDTA

93 cab49719_1 1 out 2 |ali|phd|phdHtm| 156 9 4 9.19 52 MTSFMIDSTLIIEHLKGNPI

94 cab50395_1 1 out 2 |ali|phd|phdHtm| 155 0 6 0.00 140 MGFSVSASAAIILISFLVGL

95 cab50584_1 1 out 2 |ali|phd|phdHtm| 899 9 1 61.00 895 MKKAMALILGLILGSLVQPS

96 cab49000_1 1 out 1 |ali|phd|phdHtm| 437 0 2 0.00 358 MKVLLLGFEFLPVKVGGLAE

97 cab49010_1 1 out 1 |ali|phd|phdHtm| 244 6 3 6.00 96 MTKAVAFVGFKKSGKTTTIE

98 cab49122_1 1 out 1 |ali|phd|phdHtm| 396 4 2 4.00 210 MESTRRIYASPSYEVYGLSK

99 cab49126_1 1 out 1 |ali|phd|phdHtm| 483 6 2 6.00 295 MGILEKLQSFPPRYGPEWGS

100 cab49518_1 1 out 1 |ali|phd|phdHtm| 415 3 1 4.00 112 MPTTEELIARINKILDDISI

101 cab49521_1 1 out 1 |ali|phd|phdHtm| 448 0 2 0.00 247 MDEVGEMEELIKYGEKFFDE

102 cab49780_1 1 out 1 |ali|phd|phdHtm| 261 9 3 10.73 217 MGKLRIGFYALTSCYGCQLQ

103 cab49905_1 1 out 1 |ali|phd|phdHtm| 196 0 4 0.00 135 MFSHFIKRFERSMLGLSNAP

104 cab49962_1 1 out 1 |ali|phd|phdHtm| 143 9 5 14.10 85 MGRILMRFIDSNIFLYAMIK

105 cab50142_1 1 out 1 |ali|phd|phdHtm| 405 4 2 4.00 169 MSLQYKYKIFINIFALKLHM

106 cab50174_1 1 out 1 |ali|phd|phdHtm| 271 6 3 6.46 44 MTVVKMSKERMVELLQEHFE

107 cab50176_1 1 out 1 |ali|phd|phdHtm| 237 9 3 18.00 106 MTVFVINGEEPNVEGVKYVA

108 cab50209_1 1 out 1 |ali|phd|phdHtm| 361 0 2 0.00 182 MLFDPRPKTEKKDLYDRERE

109 cab50529_1 1 unk 1 |ali|phd|phdHtm| 191 0 3 0.00 21 MKKRILLVVITLLLSISLGY

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
33	cab49817_1	1	in	25	\|ali\|phd\|phdHtm\|	393	0	2	-0.56	99	MVIFRIKNYVEKDINLPWDQ
34	cab50199_1	1	in	16	\|ali\|phd\|phdHtm\|	257	0	3	-0.60	146	MGTVISIANQKGGVGKTTIA
35	cab50216_1	1	in	16	\|ali\|phd\|phdHtm\|	375	9	2	-10.84	263	MRFFLKTTILMGRGSLENVK
36	cab49370_1	1	in	12	\|ali\|phd\|phdHtm\|	338	1	3	-1.76	109	MEGIAHMENIIFSPLSSLPS
37	cab50646_1	1	in	10	\|ali\|phd\|phdHtm\|	484	7	1	-7.60	260	MVGSMKMEDVYIWDLNAKWL
38	cab49555_1	1	in	9	\|ali\|phd\|phdHtm\|	342	1	3	-1.60	109	MITIDGSYGEGGGQILRTSI
39	cab49289_1	1	in	7	\|ali\|phd\|phdHtm\|	316	3	3	-3.33	48	MEREEFVEFVERILRRIGFK
40	cab49972_1	1	in	6	\|ali\|phd\|phdHtm\|	259	3	4	-3.96	108	MDLGSKPLIGVVHLLPLPGS
41	cab50488_1	1	in	6	\|ali\|phd\|phdHtm\|	453	4	1	-4.08	110	MKLYYDRGTIKVIGNSYVPY
42	cab48950_1	1	in	3	\|ali\|phd\|phdHtm\|	426	9	1	-20.57	25	MDRYLKVIATILLGLVVVAS
43	cab49158_1	1	in	3	\|ali\|phd\|phdHtm\|	171	0	4	-0.54	113	MIQIAIAGSSDEKPFEKAVE
44	cab49499_1	1	in	3	\|ali\|phd\|phdHtm\|	287	2	3	-2.04	209	MRLDKVRVENENDKELIAFI
45	cab49015_1	1	in	2	\|ali\|phd\|phdHtm\|	239	0	3	-0.64	123	MRRAVVLFSGGLDSTASLYW
46	cab49048_1	1	in	2	\|ali\|phd\|phdHtm\|	241	2	3	-2.68	93	MEGKPVSIVLPEIENAVFIE
47	cab49276_1	1	in	2	\|ali\|phd\|phdHtm\|	472	5	2	-5.28	194	MVNSDIREQLRPFFEPRAVA
48	cab49565_1	1	in	2	\|ali\|phd\|phdHtm\|	460	1	2	-1.28	183	MSLEALFNPKSIAVIGASSK
49	cab49940_1	1	in	2	\|ali\|phd\|phdHtm\|	386	1	2	-2.00	107	MISEENVKLAEELIRKGYNE
50	cab49154_1	1	in	1	\|ali\|phd\|phdHtm\|	199	6	4	-6.00	130	MDILSLFKIGETVLVEYSGT
51	cab49205_1	1	in	1	\|ali\|phd\|phdHtm\|	250	9	3	-36.00	23	MKRVLGASILLVMLLFFSFK
52	cab49331_1	1	in	1	\|ali\|phd\|phdHtm\|	176	4	5	-4.00	28	MIDMNSKRIITGFFIVGLLL
53	cab49346_1	1	in	1	\|ali\|phd\|phdHtm\|	218	3	3	-3.33	194	MEIDEIVNREKISVLIEYTS
54	cab49608_1	1	in	1	\|ali\|phd\|phdHtm\|	260	4	4	-4.38	76	MVKIPKSHPRYWSLLYREKI
55	cab49632_1	1	in	1	\|ali\|phd\|phdHtm\|	429	9	2	-11.23	382	MFNIIVRARKDAKAIQYINE
56	cab49671_1	1	in	1	\|ali\|phd\|phdHtm\|	266	9	3	-21.56	225	MVEITVNFYIEAAGNDKKAV
57	cab49721_1	1	in	1	\|ali\|phd\|phdHtm\|	804	9	1	-13.00	26	MRRAFILNSAVLILLIPVLL
58	cab49729_1	1	in	1	\|ali\|phd\|phdHtm\|	690	9	1	-24.00	23	MRKVLGFIIVLVLILTPVSA
59	cab49779_1	1	in	1	\|ali\|phd\|phdHtm\|	428	3	2	-3.79	76	MRNLYIPITVDHIARVEGKG
60	cab49840_1	1	in	1	\|ali\|phd\|phdHtm\|	298	9	2	-38.00	22	MKGKSLIILLIIGLVILAVT
61	cab49893_1	1	in	1	\|ali\|phd\|phdHtm\|	328	9	2	-29.50	26	MRRIKVTLILPMLIIGTIIG
62	cab49963_1	1	in	1	\|ali\|phd\|phdHtm\|	320	1	3	-1.11	273	MAELKLEAREYMEKIVKKLK
63	cab50004_1	1	in	1	\|ali\|phd\|phdHtm\|	224	7	4	-8.00	68	MGMFSEELLREARPIWKKFL
64	cab50018_1	1	in	1	\|ali\|phd\|phdHtm\|	113	6	7	-6.75	34	MRYSTSTGKPKSNSPQFFFL
65	cab50105_1	1	in	1	\|ali\|phd\|phdHtm\|	110	6	7	-6.46	40	MVVLDTSIVIDRVKRKDEIK
66	cab50107_1	1	in	1	\|ali\|phd\|phdHtm\|	268	5	4	-5.96	211	MQIREARPEDRPFIEDISRL
67	cab50158_1	1	in	1	\|ali\|phd\|phdHtm\|	371	9	2	-12.00	287	MESLKIALVSDWYFPKIGGV
68	cab50267_1	1	in	1	\|ali\|phd\|phdHtm\|	334	4	2	-4.00	198	MVEMAVRKPPITTREYWAPG
69	cab50436_1	1	in	1	\|ali\|phd\|phdHtm\|	265	7	3	-8.00	144	MITPEEIAELVVQIRREHGL
70	cab50542_1	1	in	1	\|ali\|phd\|phdHtm\|	225	3	4	-3.11	63	MLTIEEVIGLIPEGGIMSII
71	cab50292_1	1	out	111	\|ali\|phd\|phdHtm\|	348	7	3	7.56	190	MSEKMVAIMKTKPAYGAELV
72	cab49296_1	1	out	29	\|ali\|phd\|phdHtm\|	284	0	2	0.88	65	MSFAKLEFFNPFSRSIKDRA
73	cab49202_1	1	out	17	\|ali\|phd\|phdHtm\|	254	6	2	6.44	109	MSVKAWRKIALDIINDFDQN
74	cab49379_1	1	out	16	\|ali\|phd\|phdHtm\|	356	5	2	5.18	344	MRGRVLSFTLFGESHGKGVG
75	cab49368_1	1	out	14	\|ali\|phd\|phdHtm\|	317	2	3	2.68	79	MIESFRESFGRTLVEIGRKN
76	cab49442_1	1	out	11	\|ali\|phd\|phdHtm\|	395	0	2	0.88	309	MEFKKLMPYREALTLLLNDV
77	cab50617_1	1	out	10	\|ali\|phd\|phdHtm\|	406	4	2	4.50	388	MILQVALDLTDIEQAISIAE
78	cab49308_1	1	out	9	\|ali\|phd\|phdHtm\|	334	7	2	7.16	218	MKVKVGVNGYGTIGKRVAYA
79	cab50071_1	1	out	9	\|ali\|phd\|phdHtm\|	298	3	2	3.92	279	MSRPIVSVIIPTYNRANLLR
80	cab49463_1	1	out	8	\|ali\|phd\|phdHtm\|	335	2	3	2.20	130	MPRLVLASAPAKIILFGEHS
81	cab49662_1	1	out	8	\|ali\|phd\|phdHtm\|	439	1	2	1.80	145	MKCPKCGREYKAEIPPFCIC
82	cab50218_1	1	out	7	\|ali\|phd\|phdHtm\|	336	7	2	7.64	98	MKIRLEHGAGGELMEELIRD
83	cab49813_1	1	out	5	\|ali\|phd\|phdHtm\|	196	0	4	0.62	165	MEIKLPRPKTKGNVSLEEAI
84	cab49747_1	1	out	4	\|ali\|phd\|phdHtm\|	306	5	2	5.60	199	MNSVVVRYGEIGTKSRQTRA
85	cab49824_1	1	out	4	\|ali\|phd\|phdHtm\|	277	9	3	12.80	207	MRFGIVARRDREEALKLAYR
86	cab50078_1	1	out	4	\|ali\|phd\|phdHtm\|	459	9	1	11.36	152	MILVSRFIDREDELEFLRKR
87	cab50288_1	1	out	4	\|ali\|phd\|phdHtm\|	212	4	4	4.80	151	MKMKTLFLLIKLAKMGAIGK
88	cab50464_1	1	out	3	\|ali\|phd\|phdHtm\|	354	9	2	20.00	22	MNSIVPLIITIAGVSIAIYY
89	cab48961_1	1	out	2	\|ali\|phd\|phdHtm\|	336	8	2	8.00	92	MESLFLLVLGNTEISTIPGI
90	cab49063_1	1	out	2	\|ali\|phd\|phdHtm\|	146	9	6	9.32	79	MVFVVAIIGGIIWGPKIDPE
91	cab49193_1	1	out	2	\|ali\|phd\|phdHtm\|	497	7	2	7.88	165	MGTRTKVAIIGAGITGASIA
92	cab49467_1	1	out	2	\|ali\|phd\|phdHtm\|	166	9	6	15.65	41	MSTIISKFSVLTSVLVGDTA
93	cab49719_1	1	out	2	\|ali\|phd\|phdHtm\|	156	9	4	9.19	52	MTSFMIDSTLIIEHLKGNPI
94	cab50395_1	1	out	2	\|ali\|phd\|phdHtm\|	155	0	6	0.00	140	MGFSVSASAAIILISFLVGL
95	cab50584_1	1	out	2	\|ali\|phd\|phdHtm\|	899	9	1	61.00	895	MKKAMALILGLILGSLVQPS
96	cab49000_1	1	out	1	\|ali\|phd\|phdHtm\|	437	0	2	0.00	358	MKVLLLGFEFLPVKVGGLAE
97	cab49010_1	1	out	1	\|ali\|phd\|phdHtm\|	244	6	3	6.00	96	MTKAVAFVGFKKSGKTTTIE
98	cab49122_1	1	out	1	\|ali\|phd\|phdHtm\|	396	4	2	4.00	210	MESTRRIYASPSYEVYGLSK
99	cab49126_1	1	out	1	\|ali\|phd\|phdHtm\|	483	6	2	6.00	295	MGILEKLQSFPPRYGPEWGS
100	cab49518_1	1	out	1	\|ali\|phd\|phdHtm\|	415	3	1	4.00	112	MPTTEELIARINKILDDISI
101	cab49521_1	1	out	1	\|ali\|phd\|phdHtm\|	448	0	2	0.00	247	MDEVGEMEELIKYGEKFFDE
102	cab49780_1	1	out	1	\|ali\|phd\|phdHtm\|	261	9	3	10.73	217	MGKLRIGFYALTSCYGCQLQ
103	cab49905_1	1	out	1	\|ali\|phd\|phdHtm\|	196	0	4	0.00	135	MFSHFIKRFERSMLGLSNAP
104	cab49962_1	1	out	1	\|ali\|phd\|phdHtm\|	143	9	5	14.10	85	MGRILMRFIDSNIFLYAMIK
105	cab50142_1	1	out	1	\|ali\|phd\|phdHtm\|	405	4	2	4.00	169	MSLQYKYKIFINIFALKLHM
106	cab50174_1	1	out	1	\|ali\|phd\|phdHtm\|	271	6	3	6.46	44	MTVVKMSKERMVELLQEHFE
107	cab50176_1	1	out	1	\|ali\|phd\|phdHtm\|	237	9	3	18.00	106	MTVFVINGEEPNVEGVKYVA
108	cab50209_1	1	out	1	\|ali\|phd\|phdHtm\|	361	0	2	0.00	182	MLFDPRPKTEKKDLYDRERE
109	cab50529_1	1	unk	1	\|ali\|phd\|phdHtm\|	191	0	3	0.00	21	MKKRILLVVITLLLSISLGY

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