--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Pyrococcus abyssi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 323 cab50676_1 1 in 16 324 4 3 -4.04 97 MLALGIEGTAHTLGIGIVSE FRLEETIVKQKFRTDEVEIV 324 cab50398_1 1 in 10 222 9 6 -10.22 29 MRRGAIGIGTLIVFIAMVLV AGTVIDLITPATYSSEGIEL 325 cab50399_1 1 in 10 219 6 6 -6.82 30 MHRKGAIGIGTLIVFIAMVL AAGVIDFTTPSTYNYRVMVL 326 cab50400_1 1 in 10 175 9 8 -13.92 39 MKNLQGGAWQMARRGAIGIG PNVGSPTPFTVTKDLDSVPS 327 cab48927_1 1 in 6 61 9 9 -21.00 55 MPELQERIRNFLKESKRVFL IILIGLIGMLIRIMGILVLG 328 cab50308_1 1 in 3 186 3 7 -3.28 43 MSIYTLVKSKNSLEGFKMRK LTFEDDKGHTYTVTTNSIEL 329 cab49931_1 1 in 2 229 8 5 -8.00 117 MLAVFPVGFDEKFIIRALMR FYLRLHGGCIEDLEEELGDG 330 cab50229_1 1 in 2 262 3 4 -3.96 128 MALYFIGLGLYDEKDITLKG LHIVEAEYLVEIAGAPREII 331 cab49392_1 1 in 1 239 8 5 -8.50 30 MRKGGLLGLALFLVVLVIVG GEKKVKVNLEDVMGRVEIIN 332 cab49447_1 1 in 1 173 4 7 -4.22 27 MLLRCLLMKILKLIIVLSLI EIDFLRTEITIMQNVTAKSC 333 cab49647_1 1 in 1 862 9 1 -9.86 46 MKSTVSFLRSSRLEEFNLES FYVWAGNDYYVLFGPNHGPT 334 cab49722_1 1 in 1 686 4 1 -4.00 28 MRRGFIFTLDALLSLILVVT MGNIPGLFKPIQITLRVWRE 335 cab49932_1 1 in 1 222 7 6 -7.46 181 MTCCAYFKDGRCVESMEDHI EEVLSVYKEVEKFVSSISSG 336 cab50102_1 1 in 1 213 9 6 -16.00 151 MDKPHIAIIGLRGIPSKYGG LPSKPSKEDEAKILDRLRRF 337 cab50191_1 1 in 1 134 2 9 -2.75 36 MRIKAKDAIPVLIAILALAL NFSRLDEILRMVEEDINERS 338 cab50359_1 1 in 1 452 8 2 -8.00 134 MSWDEMYRDAYERVLNSIGK TVGIGDTISSSAFVSEFSLS 339 cab50551_1 1 in 1 805 4 2 -4.00 453 MGVVFMVSFAIYTTSGDVVY MLRYLIEALKIIKGENEHES 340 cab50681_1 1 in 1 235 1 6 -1.09 31 MTGGTVSSKLFLLILVLAII NYGGGMDFLREFLKYAKEKE 341 cab50468_1 1 out 15 299 9 4 10.40 25 MMISAGGVALIILGIFLLIM RVLQKVKSIPLQQSTEKKIE 342 cab49571_1 1 out 14 268 9 5 15.35 23 MILPTNFFVTTIILLFILIF FKSLSDAAQVYAKKEKEKEK 343 cab49532_1 1 out 12 249 0 5 0.40 163 MMEKPEGLKLIDENGRRIDG KQREALKEKYLKIAQEVEGS 344 cab49906_1 1 out 6 446 3 2 3.44 387 MLCNQCSMSLSGGCTVRGVC REMLSKGISLEESAPLAEEL 345 cab50002_1 1 out 6 268 2 6 2.23 221 MNALNFIVEALNEVRKRKPL WLYRIDGEVIRKYAKVREVG 346 cab49574_1 1 out 5 429 9 2 11.40 325 MTQMEDAKKGVITDEMLYIA MCGDLCAIKIIQEMLTKKQT 347 cab50609_1 1 out 4 184 0 6 0.75 168 MCRVPVMVVSKEKLKVLSDR TFLHSHKYLKESKELSELLD 348 cab49594_1 1 out 3 367 9 3 23.43 46 MITLGMLFELQDLWMQLSKN FEDVQFVDLKKAKAPLLKRY 349 cab50372_1 1 out 3 161 1 9 1.32 35 MRGFIPTFILAFLTYVLFTG PEEAKKVICEDFERYAKKIF 350 cab50508_1 1 out 3 595 9 2 24.00 484 MRRILISMLIITLMFPIVHG IVSFLKAVSRVLLNIIFGEG 351 cab49187_1 1 unk 2 286 0 4 0.00 19 MIWTWTILLFLTIIFGFFAF TIVKYKEEWKRKVGEFLRAN 352 cab50193_1 1 out 2 410 5 4 5.29 38 MKPTGKAYALMTIIWIITIL DWNVKHPLKAAILSTFRGNV 353 cab50394_1 1 out 2 164 9 9 13.28 35 MPTGGELMSAGGPASELIMF GYHRLQVVLKNGKRRVLIFK 354 cab48944_1 1 out 1 140 2 9 2.84 56 MEIDKDLIERRLAEIKGAIN REDIVDLEEFIRAVVRYLEK 355 cab49003_1 1 out 1 199 0 6 0.00 104 MLGVIFAVKLKRSDNYLIPI EVRTSEDLRTILNARDNLGK 356 cab49462_1 1 out 1 124 6 9 6.91 30 MLNFLKILAILSDEIAVLVF KKREAVKVIRVEGNIMIVER 357 cab49685_1 1 out 1 136 5 9 5.59 52 MHAVIDTDILIYDTFEDLEF TFDEKLRKLATKHGIRVLPE 358 cab49686_1 1 out 1 107 5 9 5.67 37 MNPENKLMLIAYAIFTIAGI VTNYQPVSYYNGTLYYNISK 359 cab49724_1 1 out 1 148 5 7 5.47 37 MTEGVFVSKSRGQTAIEELF GFKYNGTLIYNGIGIEVEVE 360 cab49730_1 1 out 1 694 9 1 15.00 654 MRKTGILLVALILLSLISGI GGLPKKEEKGKEEGEIKIKE 361 cab49733_1 1 out 1 527 9 2 12.00 451 MNVKRIALILLILMLEPLVL VVWEIQELEPEEEATLQLIL 362 cab49934_1 1 out 1 393 8 3 8.00 183 MILEAIARLPFEGLSKELIT SGELRKVLRVFMQEDHLEVL 363 cab50014_1 1 out 1 107 8 9 8.50 38 MKPLVSRRIDFRRSSIHILT KVSFVTLDDGEFAGVVYDET 364 cab50028_1 1 out 1 104 4 9 4.89 27 MIAWIYQIRVFGLIVLLLSF ERSRCSQSLLSLQRFKLNLI 365 cab50099_1 1 out 1 352 3 4 3.08 326 MYVNAPRVSIIILNWNGWKD PSLFSFYMQGIFDGIRRNKK 366 cab50115_1 1 out 1 103 9 9 10.58 77 MIELIPLLFGYSIMFFGALG GAYKMGVKPVGKVDMYAWDN 367 cab50343_1 1 out 1 277 9 4 12.00 191 MKSLLTFKTLLNFKYLIRPR EGFEDLETLAYEHYCTCGDL 368 cab50390_1 1 out 1 642 9 2 28.00 637 MRKGIALLVMILILPLVSAS LFGVILGAGVIILLAWIKAR 369 cab50419_1 1 out 1 300 4 3 4.00 193 MKASKLAVKLLKTENDEIIY EGAYIVRSPETIEVEFGMLL 370 cab50453_1 1 out 1 251 9 5 12.00 24 MDVGTLILIAVVVLIGSIVS LEKCKKKVEDLEKRLQELEA 371 cab50550_1 1 out 1 758 9 1 24.57 751 MNMRVPSVLLILLFLLLLNG GAIDLILLILGILLVRHLSR 372 cab50668_1 1 out 1 370 9 3 16.00 28 MEWSTLTTIFDTSLAVVFTW AKLIEDGVKPEKIKEMVGEL