Transmembrane helices for pyrab (Pyrococcus abyssi)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

You can get:

Description of Pyrococcus abyssi

taxonomy: Archaea; Euryarchaeota; Thermococcales; Thermococcaceae; Pyrococcus
Pyrococcus abyssi is a microbe isolated from samples taken close to a hot spring situated 3500 meters deep in the south-east Pacific. Its optimal growth conditions are 103 degreeC and 200 atmospheres pressure.
The total number of ORF of Pyrococcus abyssi used in this study is 1765.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	50	18	31	2.8	1.0	1.8	21.1	11.4	9.6
2	60	34	26	3.4	1.9	1.5	18.2	10.4	7.9
3	34	17	17	1.9	1.0	1.0	14.8	8.4	6.4
4	34	21	13	1.9	1.2	0.7	12.9	7.5	5.4
5	31	12	19	1.8	0.7	1.1	11.0	6.3	4.7
6	27	20	7	1.5	1.1	0.4	9.2	5.6	3.6
7	32	17	15	1.8	1.0	0.8	7.7	4.5	3.2
8	21	11	10	1.2	0.6	0.6	5.9	3.5	2.4
9	14	8	6	0.8	0.5	0.3	4.7	2.9	1.8
10	15	11	4	0.8	0.6	0.2	3.9	2.4	1.5
11	19	11	8	1.1	0.6	0.5	3.1	1.8	1.2
12	19	14	5	1.1	0.8	0.3	2.0	1.2	0.8
13	9	4	5	0.5	0.2	0.3	0.9	0.4	0.5
14	4	1	3	0.2	0.1	0.2	0.4	0.2	0.2
15	3	2	1	0.2	0.1	0.1	0.2	0.1	0.1

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
cubic@dodo.bioc.columbia.edu