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Transmembrane helices for neime (neime)-- Low Reliability Report

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

19 nmb1709 1 in 30 |ali|phd|phdHtm| 264 4 3 -4.40 191 MKAYLDLMRHVLDNGTDKSD

20 nmb1609 1 in 24 |ali|phd|phdHtm| 389 2 1 -2.28 97 MSKKLHPQTLAIRGGKEQTE

21 nmb0802 1 in 23 |ali|phd|phdHtm| 385 2 2 -2.28 86 MKFATKAIHSSYDCDEHNRA

22 nmb1730 1 in 22 |ali|phd|phdHtm| 280 9 2 -10.09 29 MDKERILTPAVVFSVALLHL

23 nmb0692 1 in 16 |ali|phd|phdHtm| 332 9 2 -19.56 43 MSENKQNEVLSGYEQLKRRN

24 nmb0458 1 in 12 |ali|phd|phdHtm| 270 2 2 -2.40 83 MENIGRQRPIGVFDSGIGGL

25 nmb1814 1 in 12 |ali|phd|phdHtm| 359 5 2 -5.76 121 MKTLTVHTPSHSYPIFIGNG

26 nmb1046 1 in 9 |ali|phd|phdHtm| 469 4 2 -4.68 237 MKYISTRGETAHKPFSEVLL

27 nmb1057 1 in 9 |ali|phd|phdHtm| 606 0 1 -0.25 36 MPCMNHQSNSGEGVLVAKTY

28 nmb0025 1 in 7 |ali|phd|phdHtm| 223 7 4 -7.80 80 GFNDAAGVASSSKIKGKYVK

29 nmb0246 1 in 7 |ali|phd|phdHtm| 433 1 1 -1.84 128 MAIYQSGVIFDQVDTANPDC

30 nmb1049 1 in 7 |ali|phd|phdHtm| 304 0 3 -0.72 241 MDAVQLKSFVAVAHEGNLTQ

31 nmb1875 1 in 7 |ali|phd|phdHtm| 144 4 5 -4.32 142 MPACFCPHCKTRLWVKETQL

32 nmb0338 1 in 5 |ali|phd|phdHtm| 160 6 5 -6.69 74 MERNGVFGKIVGNRILRMSS

33 nmb1067 1 in 5 |ali|phd|phdHtm| 1014 2 0 -2.00 81 MFWIVLIVILLLALAGLFFV

34 nmb0180 1 in 4 |ali|phd|phdHtm| 348 1 2 -1.60 266 MIPATYTLSQITARLGGEWR

35 nmb0853 1 in 4 |ali|phd|phdHtm| 209 1 4 -1.78 40 MAAHLEEQQELDNFKYFWKT

36 nmb0440 1 in 3 |ali|phd|phdHtm| 290 3 3 -3.64 84 MPILNHIALIGVGLIGGSFV

37 nmb0505 1 in 2 |ali|phd|phdHtm| 94 4 9 -4.64 31 MLLPRPACFCHRVDLLLLTV

38 nmb0816 1 in 2 |ali|phd|phdHtm| 104 3 8 -3.06 70 MCVLLHRRLSHAGDESVYVA

39 nmb2156 1 in 2 |ali|phd|phdHtm| 322 9 2 -10.45 262 MKILLVRLSSMGDLIHTLPA

40 nmb0363 1 in 1 |ali|phd|phdHtm| 45 9 9 -18.33 30 MKRLRAEIYADALSFPYILC

41 nmb0653 1 in 1 |ali|phd|phdHtm| 422 9 2 -22.00 28 MKPLRRLTNLLAACAVAAAA

42 nmb0996 1 in 1 |ali|phd|phdHtm| 123 4 8 -4.10 57 MKPYKIYTHPALPPQAVKQG

43 nmb1102 1 in 1 |ali|phd|phdHtm| 197 9 5 -10.00 128 MVRTVKSYNGEADDLAGQIH

44 nmb1397 1 in 1 |ali|phd|phdHtm| 60 9 9 -9.64 50 MNTNLNDKDKAMDTAIRFQK

45 nmb1431 1 in 1 |ali|phd|phdHtm| 83 2 9 -2.69 41 MKNLRLGIFGFKVRKCGFLC

46 nmb1481 1 in 1 |ali|phd|phdHtm| 44 9 9 -9.52 32 MPSETFRRHRQPISAGYPII

47 nmb1565 1 in 1 |ali|phd|phdHtm| 223 9 3 -18.22 27 MMKTFKNIFSAAILSAALPC

48 nmb1620 1 in 1 |ali|phd|phdHtm| 394 7 1 -8.00 180 MTEPTSRRRFLKTCTAAAGA

49 nmb1671 1 in 1 |ali|phd|phdHtm| 553 5 1 -5.04 41 MTDNSPPPNGHAQARVRKNN

50 nmb1750 1 in 1 |ali|phd|phdHtm| 316 3 2 -3.00 304 MYLGIDVSKLTIDCCLIVDG

51 nmb1809 1 in 1 |ali|phd|phdHtm| 199 8 4 -8.29 46 MNNLIKINLLPYREEMNKRK

52 nmb1922 1 in 1 |ali|phd|phdHtm| 52 4 9 -4.13 38 MVEQSFGTLHHKFRYARAAY

53 nmb0546 1 out 93 |ali|phd|phdHtm| 348 6 2 6.32 189 MKMQAVVVNKNVAGDVEVIE

54 nmb0957 1 out 63 |ali|phd|phdHtm| 477 1 1 1.96 204 MSQYDVVVIGAGPGGYVAAI

55 nmb0763 1 out 29 |ali|phd|phdHtm| 310 3 2 3.20 92 MKIANSITELIGNTPLVKLN

56 nmb1312 1 out 25 |ali|phd|phdHtm| 176 9 4 10.08 82 MKERIVFLVGPVTDESANLV

57 nmb1792 1 out 21 |ali|phd|phdHtm| 314 4 3 4.25 37 MQENEYREDLAADAARQSVL

58 nmb0055 1 out 20 |ali|phd|phdHtm| 263 2 2 2.80 179 MNVYFLGGGNMAAAVAGGLV

59 nmb0191 1 out 14 |ali|phd|phdHtm| 257 1 3 1.16 148 MSANILAIANQKGGVGKTTT

60 nmb0203 1 out 11 |ali|phd|phdHtm| 269 2 3 2.64 137 MTPLKIAIAGANGRMGRVLV

61 nmb1590 1 out 11 |ali|phd|phdHtm| 111 2 7 2.77 97 MFKDWKEHTALVKKSFGELG

62 nmb2088 1 out 10 |ali|phd|phdHtm| 291 9 3 12.00 139 MFQKHLQKASDSVVGGTLYV

63 nmb0352 1 out 8 |ali|phd|phdHtm| 324 8 2 8.80 174 MAENGKYLDWAREVLHAEAE

64 nmb0416 1 out 8 |ali|phd|phdHtm| 455 6 2 6.32 301 MKPLDLNFICQALKLPMPSE

65 nmb1908 1 out 8 |ali|phd|phdHtm| 241 9 3 13.84 138 MSEGMMSPVLYLIPTPLGTP

66 nmb0178 1 out 7 |ali|phd|phdHtm| 258 0 4 1.00 168 MTLIHPTAVIDPKAELDSGV

67 nmb1859 1 out 7 |ali|phd|phdHtm| 346 9 2 9.45 311 MDISDFDFTLPEKLIAQHPP

68 nmb0483 1 out 6 |ali|phd|phdHtm| 94 9 9 47.44 89 MFGGRLKNAPSITAKHFLKE

69 nmb0973 1 out 6 |ali|phd|phdHtm| 94 9 9 47.44 89 MFGGRLKNAPSITAKHFLKE

70 nmb1744 1 out 6 |ali|phd|phdHtm| 94 9 9 47.44 89 MFGGRLKNAPSITAKHFLKE

71 nmb0601 1 out 5 |ali|phd|phdHtm| 67 9 9 21.20 22 MGSFSLTHWIIVLIIVVLIF

72 nmb1772 1 out 5 |ali|phd|phdHtm| 612 8 1 8.12 127 MRKVCASARTRSMIYGSMPS

73 nmb0199 1 out 4 |ali|phd|phdHtm| 390 7 2 7.68 301 MWGQTNMADKKSPLIAVSVG

74 nmb0807 1 out 4 |ali|phd|phdHtm| 296 9 3 12.00 221 MNSPFHNIGIVTRPNTPDIQ

75 nmb0908 1 out 4 |ali|phd|phdHtm| 66 5 9 5.00 58 METITIPKENFDALLNLART

76 nmb1871 1 out 4 |ali|phd|phdHtm| 225 2 3 2.92 99 MQADFNRPVLAVDTGTSRLS

77 nmb0825 1 out 3 |ali|phd|phdHtm| 323 4 3 4.50 305 MSAKFQQETLKSRFAQAKVL

78 nmb1390 1 out 3 |ali|phd|phdHtm| 328 4 4 4.82 272 MSSTPNKQAGYPRLVADIGG

79 nmb2074 1 unk 3 |ali|phd|phdHtm| 288 0 3 0.00 20 MKWLFILLVAINIAVFGGTV

80 nmb0448 1 out 2 |ali|phd|phdHtm| 242 9 3 16.04 224 MLLGVNIDHIATVRNARGTT

81 nmb0606 1 out 2 |ali|phd|phdHtm| 88 9 9 26.68 23 MNQAVAQFAPLVLIMVVFYF

82 nmb1737 1 out 2 |ali|phd|phdHtm| 467 5 2 5.18 54 MTLLNLMIMQDYGISVCLTL

83 nmb0119 1 out 1 |ali|phd|phdHtm| 231 9 4 10.00 143 MMKDLNLSNSLFKGYNDKHG

84 nmb0270 1 out 1 |ali|phd|phdHtm| 249 3 3 4.00 85 MPDAVKKVYLIHGWGANRHM

85 nmb0288 1 out 1 |ali|phd|phdHtm| 76 3 9 3.27 34 MGGEVNRADVVGFLVAAFEI

86 nmb0715 1 out 1 |ali|phd|phdHtm| 106 6 7 6.82 62 MDWMGSLFLPGGALLFLSVV

87 nmb0900 1 out 1 |ali|phd|phdHtm| 305 7 3 8.00 237 MNVSVLNFGNTPVSFRQDGF

88 nmb1018 1 out 1 |ali|phd|phdHtm| 160 1 5 2.00 135 MSLLTLLRPATVQDCKDIFK

89 nmb1280 1 out 1 |ali|phd|phdHtm| 475 8 2 8.67 451 MIHTEPSAQPSTMDTAAFLK

90 nmb2068 1 out 1 |ali|phd|phdHtm| 366 0 2 0.83 342 MTRIAILGGGLSGRLTALQL

91 nmb2073 1 unk 1 |ali|phd|phdHtm| 67 0 9 0.00 67 MTTLSAPNRTDVQTRATLFP

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
19	nmb1709	1	in	30	\|ali\|phd\|phdHtm\|	264	4	3	-4.40	191	MKAYLDLMRHVLDNGTDKSD
20	nmb1609	1	in	24	\|ali\|phd\|phdHtm\|	389	2	1	-2.28	97	MSKKLHPQTLAIRGGKEQTE
21	nmb0802	1	in	23	\|ali\|phd\|phdHtm\|	385	2	2	-2.28	86	MKFATKAIHSSYDCDEHNRA
22	nmb1730	1	in	22	\|ali\|phd\|phdHtm\|	280	9	2	-10.09	29	MDKERILTPAVVFSVALLHL
23	nmb0692	1	in	16	\|ali\|phd\|phdHtm\|	332	9	2	-19.56	43	MSENKQNEVLSGYEQLKRRN
24	nmb0458	1	in	12	\|ali\|phd\|phdHtm\|	270	2	2	-2.40	83	MENIGRQRPIGVFDSGIGGL
25	nmb1814	1	in	12	\|ali\|phd\|phdHtm\|	359	5	2	-5.76	121	MKTLTVHTPSHSYPIFIGNG
26	nmb1046	1	in	9	\|ali\|phd\|phdHtm\|	469	4	2	-4.68	237	MKYISTRGETAHKPFSEVLL
27	nmb1057	1	in	9	\|ali\|phd\|phdHtm\|	606	0	1	-0.25	36	MPCMNHQSNSGEGVLVAKTY
28	nmb0025	1	in	7	\|ali\|phd\|phdHtm\|	223	7	4	-7.80	80	GFNDAAGVASSSKIKGKYVK
29	nmb0246	1	in	7	\|ali\|phd\|phdHtm\|	433	1	1	-1.84	128	MAIYQSGVIFDQVDTANPDC
30	nmb1049	1	in	7	\|ali\|phd\|phdHtm\|	304	0	3	-0.72	241	MDAVQLKSFVAVAHEGNLTQ
31	nmb1875	1	in	7	\|ali\|phd\|phdHtm\|	144	4	5	-4.32	142	MPACFCPHCKTRLWVKETQL
32	nmb0338	1	in	5	\|ali\|phd\|phdHtm\|	160	6	5	-6.69	74	MERNGVFGKIVGNRILRMSS
33	nmb1067	1	in	5	\|ali\|phd\|phdHtm\|	1014	2	0	-2.00	81	MFWIVLIVILLLALAGLFFV
34	nmb0180	1	in	4	\|ali\|phd\|phdHtm\|	348	1	2	-1.60	266	MIPATYTLSQITARLGGEWR
35	nmb0853	1	in	4	\|ali\|phd\|phdHtm\|	209	1	4	-1.78	40	MAAHLEEQQELDNFKYFWKT
36	nmb0440	1	in	3	\|ali\|phd\|phdHtm\|	290	3	3	-3.64	84	MPILNHIALIGVGLIGGSFV
37	nmb0505	1	in	2	\|ali\|phd\|phdHtm\|	94	4	9	-4.64	31	MLLPRPACFCHRVDLLLLTV
38	nmb0816	1	in	2	\|ali\|phd\|phdHtm\|	104	3	8	-3.06	70	MCVLLHRRLSHAGDESVYVA
39	nmb2156	1	in	2	\|ali\|phd\|phdHtm\|	322	9	2	-10.45	262	MKILLVRLSSMGDLIHTLPA
40	nmb0363	1	in	1	\|ali\|phd\|phdHtm\|	45	9	9	-18.33	30	MKRLRAEIYADALSFPYILC
41	nmb0653	1	in	1	\|ali\|phd\|phdHtm\|	422	9	2	-22.00	28	MKPLRRLTNLLAACAVAAAA
42	nmb0996	1	in	1	\|ali\|phd\|phdHtm\|	123	4	8	-4.10	57	MKPYKIYTHPALPPQAVKQG
43	nmb1102	1	in	1	\|ali\|phd\|phdHtm\|	197	9	5	-10.00	128	MVRTVKSYNGEADDLAGQIH
44	nmb1397	1	in	1	\|ali\|phd\|phdHtm\|	60	9	9	-9.64	50	MNTNLNDKDKAMDTAIRFQK
45	nmb1431	1	in	1	\|ali\|phd\|phdHtm\|	83	2	9	-2.69	41	MKNLRLGIFGFKVRKCGFLC
46	nmb1481	1	in	1	\|ali\|phd\|phdHtm\|	44	9	9	-9.52	32	MPSETFRRHRQPISAGYPII
47	nmb1565	1	in	1	\|ali\|phd\|phdHtm\|	223	9	3	-18.22	27	MMKTFKNIFSAAILSAALPC
48	nmb1620	1	in	1	\|ali\|phd\|phdHtm\|	394	7	1	-8.00	180	MTEPTSRRRFLKTCTAAAGA
49	nmb1671	1	in	1	\|ali\|phd\|phdHtm\|	553	5	1	-5.04	41	MTDNSPPPNGHAQARVRKNN
50	nmb1750	1	in	1	\|ali\|phd\|phdHtm\|	316	3	2	-3.00	304	MYLGIDVSKLTIDCCLIVDG
51	nmb1809	1	in	1	\|ali\|phd\|phdHtm\|	199	8	4	-8.29	46	MNNLIKINLLPYREEMNKRK
52	nmb1922	1	in	1	\|ali\|phd\|phdHtm\|	52	4	9	-4.13	38	MVEQSFGTLHHKFRYARAAY
53	nmb0546	1	out	93	\|ali\|phd\|phdHtm\|	348	6	2	6.32	189	MKMQAVVVNKNVAGDVEVIE
54	nmb0957	1	out	63	\|ali\|phd\|phdHtm\|	477	1	1	1.96	204	MSQYDVVVIGAGPGGYVAAI
55	nmb0763	1	out	29	\|ali\|phd\|phdHtm\|	310	3	2	3.20	92	MKIANSITELIGNTPLVKLN
56	nmb1312	1	out	25	\|ali\|phd\|phdHtm\|	176	9	4	10.08	82	MKERIVFLVGPVTDESANLV
57	nmb1792	1	out	21	\|ali\|phd\|phdHtm\|	314	4	3	4.25	37	MQENEYREDLAADAARQSVL
58	nmb0055	1	out	20	\|ali\|phd\|phdHtm\|	263	2	2	2.80	179	MNVYFLGGGNMAAAVAGGLV
59	nmb0191	1	out	14	\|ali\|phd\|phdHtm\|	257	1	3	1.16	148	MSANILAIANQKGGVGKTTT
60	nmb0203	1	out	11	\|ali\|phd\|phdHtm\|	269	2	3	2.64	137	MTPLKIAIAGANGRMGRVLV
61	nmb1590	1	out	11	\|ali\|phd\|phdHtm\|	111	2	7	2.77	97	MFKDWKEHTALVKKSFGELG
62	nmb2088	1	out	10	\|ali\|phd\|phdHtm\|	291	9	3	12.00	139	MFQKHLQKASDSVVGGTLYV
63	nmb0352	1	out	8	\|ali\|phd\|phdHtm\|	324	8	2	8.80	174	MAENGKYLDWAREVLHAEAE
64	nmb0416	1	out	8	\|ali\|phd\|phdHtm\|	455	6	2	6.32	301	MKPLDLNFICQALKLPMPSE
65	nmb1908	1	out	8	\|ali\|phd\|phdHtm\|	241	9	3	13.84	138	MSEGMMSPVLYLIPTPLGTP
66	nmb0178	1	out	7	\|ali\|phd\|phdHtm\|	258	0	4	1.00	168	MTLIHPTAVIDPKAELDSGV
67	nmb1859	1	out	7	\|ali\|phd\|phdHtm\|	346	9	2	9.45	311	MDISDFDFTLPEKLIAQHPP
68	nmb0483	1	out	6	\|ali\|phd\|phdHtm\|	94	9	9	47.44	89	MFGGRLKNAPSITAKHFLKE
69	nmb0973	1	out	6	\|ali\|phd\|phdHtm\|	94	9	9	47.44	89	MFGGRLKNAPSITAKHFLKE
70	nmb1744	1	out	6	\|ali\|phd\|phdHtm\|	94	9	9	47.44	89	MFGGRLKNAPSITAKHFLKE
71	nmb0601	1	out	5	\|ali\|phd\|phdHtm\|	67	9	9	21.20	22	MGSFSLTHWIIVLIIVVLIF
72	nmb1772	1	out	5	\|ali\|phd\|phdHtm\|	612	8	1	8.12	127	MRKVCASARTRSMIYGSMPS
73	nmb0199	1	out	4	\|ali\|phd\|phdHtm\|	390	7	2	7.68	301	MWGQTNMADKKSPLIAVSVG
74	nmb0807	1	out	4	\|ali\|phd\|phdHtm\|	296	9	3	12.00	221	MNSPFHNIGIVTRPNTPDIQ
75	nmb0908	1	out	4	\|ali\|phd\|phdHtm\|	66	5	9	5.00	58	METITIPKENFDALLNLART
76	nmb1871	1	out	4	\|ali\|phd\|phdHtm\|	225	2	3	2.92	99	MQADFNRPVLAVDTGTSRLS
77	nmb0825	1	out	3	\|ali\|phd\|phdHtm\|	323	4	3	4.50	305	MSAKFQQETLKSRFAQAKVL
78	nmb1390	1	out	3	\|ali\|phd\|phdHtm\|	328	4	4	4.82	272	MSSTPNKQAGYPRLVADIGG
79	nmb2074	1	unk	3	\|ali\|phd\|phdHtm\|	288	0	3	0.00	20	MKWLFILLVAINIAVFGGTV
80	nmb0448	1	out	2	\|ali\|phd\|phdHtm\|	242	9	3	16.04	224	MLLGVNIDHIATVRNARGTT
81	nmb0606	1	out	2	\|ali\|phd\|phdHtm\|	88	9	9	26.68	23	MNQAVAQFAPLVLIMVVFYF
82	nmb1737	1	out	2	\|ali\|phd\|phdHtm\|	467	5	2	5.18	54	MTLLNLMIMQDYGISVCLTL
83	nmb0119	1	out	1	\|ali\|phd\|phdHtm\|	231	9	4	10.00	143	MMKDLNLSNSLFKGYNDKHG
84	nmb0270	1	out	1	\|ali\|phd\|phdHtm\|	249	3	3	4.00	85	MPDAVKKVYLIHGWGANRHM
85	nmb0288	1	out	1	\|ali\|phd\|phdHtm\|	76	3	9	3.27	34	MGGEVNRADVVGFLVAAFEI
86	nmb0715	1	out	1	\|ali\|phd\|phdHtm\|	106	6	7	6.82	62	MDWMGSLFLPGGALLFLSVV
87	nmb0900	1	out	1	\|ali\|phd\|phdHtm\|	305	7	3	8.00	237	MNVSVLNFGNTPVSFRQDGF
88	nmb1018	1	out	1	\|ali\|phd\|phdHtm\|	160	1	5	2.00	135	MSLLTLLRPATVQDCKDIFK
89	nmb1280	1	out	1	\|ali\|phd\|phdHtm\|	475	8	2	8.67	451	MIHTEPSAQPSTMDTAAFLK
90	nmb2068	1	out	1	\|ali\|phd\|phdHtm\|	366	0	2	0.83	342	MTRIAILGGGLSGRLTALQL
91	nmb2073	1	unk	1	\|ali\|phd\|phdHtm\|	67	0	9	0.00	67	MTTLSAPNRTDVQTRATLFP

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