Transmembrane helices for neime (neime)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of neime

Taxonomy: Bacteria ; Proteobacteria ; beta subdivision ; Neisseriaceae ; Neisseria
Neisseria meningitidis is a gram- bacteria. It is a causative agent of meningitis and septicaemia. It contains more genes that undergo phase variation than any pathogen studied to date, a mechanism that controls their expression and contributes to the evasion of the immune system.
The total number of ORF of neime used in this study is 2081.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	84	50	32	4.0	2.4	1.5	17.1	10.0	6.9
2	53	35	18	2.5	1.7	0.9	13.0	7.6	5.4
3	30	14	16	1.4	0.7	0.8	10.5	6.0	4.5
4	31	21	10	1.5	1.0	0.5	9.0	5.3	3.7
5	20	13	7	1.0	0.6	0.3	7.5	4.3	3.3
6	24	14	10	1.2	0.7	0.5	6.6	3.7	2.9
7	21	13	8	1.0	0.6	0.4	5.4	3.0	2.5
8	12	4	8	0.6	0.2	0.4	4.4	2.4	2.1
9	13	3	10	0.6	0.1	0.5	3.8	2.2	1.7
10	11	10	1	0.5	0.5	0.0	3.2	2.0	1.2
11	22	12	10	1.1	0.6	0.5	2.7	1.5	1.2
12	19	12	7	0.9	0.6	0.3	1.6	1.0	0.7
13	7	4	3	0.3	0.2	0.1	0.7	0.4	0.3
14	6	3	3	0.3	0.1	0.1	0.4	0.2	0.2
15	1	0	1	0.0	0.0	0.0	0.1	0.0	0.0
16	1	1	0	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Apr 3, 2000 Contact CUBIC WWW administrator:
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