Transmembrane helices for myctu (Mycobacterium tuberculosis)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Mycobacterium tuberculosis

taxonomy: Bacteria; Firmicutes; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium
The total number of ORF of Mycobacterium tuberculosis used in this study is 3918.

Percentage of all proteins in Mycobacterium tuberculosis with N membrane helices:

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	164	86	77	4.2	2.2	2.0	20.1	12.0	8.0
2	149	102	47	3.8	2.6	1.2	15.9	9.9	6.0
3	90	53	37	2.3	1.4	0.9	12.1	7.2	4.8
4	73	45	28	1.9	1.1	0.7	9.8	5.9	3.9
5	65	36	29	1.7	0.9	0.7	7.9	4.7	3.2
6	63	38	25	1.6	1.0	0.6	6.3	3.8	2.5
7	33	20	13	0.8	0.5	0.3	4.7	2.9	1.8
8	25	17	8	0.6	0.4	0.2	3.8	2.3	1.5
9	23	11	12	0.6	0.3	0.3	3.2	1.9	1.3
10	35	22	13	0.9	0.6	0.3	2.6	1.6	1.0
11	23	10	13	0.6	0.3	0.3	1.7	1.1	0.6
12	25	18	7	0.6	0.5	0.2	1.1	0.8	0.3
13	10	8	2	0.3	0.2	0.1	0.5	0.4	0.1
14	5	3	2	0.1	0.1	0.1	0.2	0.2	0.1
15	2	1	1	0.1	0.0	0.0	0.1	0.1	0.0
16	2	2	0	0.1	0.1	0.0	0.1	0.1	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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