--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Mycoplasma pneumoniae --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 16 A65_ORF517 9 in 4 517 5 1 -5.96 54,101,123,155,180,240,286,337,370 MNALNYLKHRFLFSKDKFWY TALENEFASLNEAISQKLEE 17 R02_ORF694 9 out 14 694 3 0 3.65 338,381,443,481,517,560,621,648,674 MFKPLLSAELFFNWTAKDFK IIGHNLLVVRKKTKQLVNTN 18 G07_ORF389B 9 out 3 389 7 0 7.26 43,74,116,167,218,241,267,298,325 MNPSVSSRPPWSTAFYLGPG IYRLYDHEMLMFDKLEAVPE 19 R02_ORF440 9 out 2 440 9 1 13.25 45,74,117,169,230,273,299,418,440 MQLTTSQQMQTNFLTTNKHH QISIPFYVIGGVIWFFTFIS 20 A05_ORF395 9 out 1 395 0 0 0.51 37,78,105,155,193,215,271,309,367 MSTPKSASFFTRKNILAFSF PVLPTVNLINHHFWNNKKLH 21 G07_ORF872V 8 in 116 872 6 0 -6.05 59,94,261,292,683,749,828,858 MNKWTGLSAAAVLESRAQHG VLLYMTINEVVKLIRLSYGS 22 K05_ORF1882 8 in 5 1882 9 0 -10.85 34,1005,1053,1100,1172,1778,1831,1867 MFSFFKQIFKSLKKFFFLLF IFVIGSYFWIKLRSAELKEG 23 G07_ORF479 8 in 4 479 4 4 -4.72 40,84,124,153,191,244,305,349 MDKLINKPQPLTSDISTSGF EKHPEKLLANCKEMSVGFVK 24 H08_ORF565 8 in 3 565 9 1 -13.18 45,129,189,280,328,416,478,540 MTAAHKQKAKLLAWLKLILW FVKKHPQGNSFSYPREDVKV 25 R02_ORF1386V 8 in 2 1386 9 0 -17.34 35,530,581,629,694,1279,1327,1367 MRNLIKNVFRSFRTAKIALI TFVLNWLELNKIKIAKEIKN 26 R02_ORF329 8 in 1 329 4 1 -4.62 48,103,139,186,209,238,280,317 MQTILTDQASFNILTSKRNL ATLVTTILLFIRFNKKRLLK 27 A65_ORF311 8 out 1 311 3 3 3.06 32,56,95,119,166,217,255,294 MSQSLISFSNLDNWLFVAPA VFGYLNVGPKNVGKHFDKGL 28 G07_ORF389A 8 out 1 389 8 0 8.32 18,100,134,178,233,255,287,309 MFIVMTIVFFLVNSTGQTPL EPTANFVLLGTKCLKIITIH 29 D09_ORF286A 7 in 6 286 3 0 -3.98 32,97,139,165,214,240,263 MFKMKSCKLWLRGSFFVIVL LHKYLRFKHKEMLRVKQWKN 30 C12_ORF293O 7 in 4 293 1 0 -1.47 57,84,119,148,208,248,270 MSPRAIVLKEPNGVNLVPHE EESQEAAQRLQNLEVAKEII 31 GT9_ORF434 7 in 3 434 1 0 -1.58 47,82,259,282,308,351,405 MDSFFINGYVPRDTFIHRLH EWLLTGKIKEQVERSLSVKS 32 VXPSPT7_ORF377 7 in 3 377 3 3 -3.84 40,85,180,217,253,314,360 MLWTRALILELKTNKQSRLL LLFFYSVEKGILNISRHFGL 33 E07_ORF319 7 in 2 319 0 0 -0.41 58,122,153,188,222,244,302 MFKQSLIWYNRYVQKRKKGL YFLFRKRIMKAVGSRANTIK 34 H08_ORF263 7 in 2 263 9 4 -14.45 21,44,76,113,158,199,241 MALSFIFNIFSINVTSVLKV IRIAENNLRNYLRVYNLSWK 35 H08_ORF287 7 in 2 287 3 4 -3.80 46,83,117,151,192,224,278 MINQANNQVNFSEQQFVHHK MNLVYFILRIILLTRNLSRA 36 B01_ORF264 7 out 14 264 0 0 -0.85 34,68,90,129,178,210,262 MFNLSDFSELPRWIGAEFLG IPVAAPLSASVILGVLVAVI 37 E09_ORF379 7 out 8 379 8 1 8.16 63,87,140,173,195,217,242 MFLGVMIFGPIAALILKHTE NQFLDKQGYLTIIEKIKNEK 38 A65_ORF285 7 out 2 285 9 4 19.87 26,53,105,127,174,196,258 MQSLNYLVVILTVAGVLVIL TKDKQMVKLALQLKKAQASV 39 C12_ORF404 7 out 2 404 7 1 7.23 59,81,113,142,208,252,295 MQDKNVKIQGNLVRVHLSGS ERKAPDKVVPPVKDPVKAQE 40 K05_ORF401 7 out 2 401 5 2 5.92 66,88,121,151,222,266,309 MDWLKRWFTRKDQDKTETTS CLVSITRIRGIDGYIYLRSQ 41 A05_ORF317 7 out 1 317 5 1 5.80 41,76,142,180,222,273,316 MTSKNFLSQLPPVLKLWWWI FKQISSPQLLAFWQLELLAI 42 G12_ORF225 7 out 1 225 6 1 6.14 44,73,101,138,160,182,208 MNGARIAFWPKKEQHQLFNL IGVPVMRAFQKFYWKKAQIV