Transmembrane helices for mycpn (Mycoplasma pneumoniae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Mycoplasma pneumoniae

taxonomy: Bacteria; Firmicutes; Bacillus/Clostridium group; Mollicutes; Mycoplasmataceae; Mycoplasma
Mycoplasma pneumoniae is a human pathogenic bacterium causing tracheobronchitis and primary atypical pneumonia. Associated with the host cell, surface colonization of human respiratory tract epithelial cells takes place. It is among the smallest self replicating cells known today.
The total number of ORF of Mycoplasma pneumoniae used in this study is 678.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	22	15	7	3.2	2.2	1.0	18.3	12.7	5.6
2	22	17	5	3.2	2.5	0.7	15.0	10.5	4.6
3	10	4	6	1.5	0.6	0.9	11.8	8.0	3.8
4	9	8	1	1.3	1.2	0.1	10.3	7.4	2.9
5	8	6	2	1.2	0.9	0.3	9.0	6.2	2.8
6	11	8	3	1.6	1.2	0.4	7.8	5.3	2.5
7	14	7	7	2.1	1.0	1.0	6.2	4.1	2.1
8	8	6	2	1.2	0.9	0.3	4.1	3.1	1.0
9	5	1	4	0.7	0.1	0.6	2.9	2.2	0.7
10	4	4	0	0.6	0.6	0.0	2.2	2.1	0.1
11	4	4	0	0.6	0.6	0.0	1.6	1.5	0.1
12	5	5	0	0.7	0.7	0.0	1.0	0.9	0.1
13	1	1	0	0.1	0.1	0.0	0.3	0.1	0.1
15	1	0	1	0.1	0.0	0.1	0.1	0.0	0.1

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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