Bottom - Previous - Next - CUBIC - PP home

Transmembrane helices for mettm (Methanobacterium thermoautotrophicum )

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

287 MTH978 1 in 165 |ali|phd|phdHtm| 455 2 3 -2.08 164 MEMIIDGEGVSGEKIFTVRN

288 MTH217 1 in 35 |ali|phd|phdHtm| 558 1 2 -1.92 165 MSKDTSVLLEEKRVFKPHYT

289 MTH701 1 in 10 |ali|phd|phdHtm| 425 5 2 -5.60 116 MTALINEFVNRVEFDSYEDF

290 MTH1448 1 in 7 |ali|phd|phdHtm| 159 4 7 -4.48 43 SIGNALPEPTIDASEMNDRR

291 MTH1157 1 in 6 |ali|phd|phdHtm| 86 2 9 -2.31 75 MSEEDKTTIPRVLVSADEFN

292 MTH1677 1 in 4 |ali|phd|phdHtm| 59 9 9 -15.51 54 MKYRESILNFIKQSKRVLRV

293 MTH1219 1 in 3 |ali|phd|phdHtm| 232 9 5 -32.00 148 VARHSVNLYTGEYNIDPFII

294 MTH1158 1 in 2 |ali|phd|phdHtm| 68 9 9 -17.10 61 MIILSNKPNIRGIKRVVEDI

295 MTH111 1 in 1 |ali|phd|phdHtm| 227 0 6 -0.57 54 DTFIDASSFFTGFFCLIDRR

296 MTH1266 1 in 1 |ali|phd|phdHtm| 79 9 9 -11.21 78 MQHFQCTFIQSGSGGNALWF

297 MTH1411 1 in 1 |ali|phd|phdHtm| 50 9 9 -16.67 48 VGDIHFKCNLTMVLMTCKGD

298 MTH1545 1 in 1 |ali|phd|phdHtm| 291 9 4 -10.00 110 VLKKGVNMDMKPLPGMEING

299 MTH1899 1 in 1 |ali|phd|phdHtm| 57 2 9 -2.27 47 MYSAAPCPASSFKNFILYTS

300 MTH294 1 in 1 |ali|phd|phdHtm| 154 3 8 -3.11 36 VLQYFDSGGISVDKLTKILI

301 MTH343 1 in 1 |ali|phd|phdHtm| 328 4 4 -4.97 291 LRVCAVVVTYNRKDLLVECL

302 MTH392 1 in 1 |ali|phd|phdHtm| 74 4 9 -4.66 43 VRSMNRLRTGSLTALILSAA

303 MTH427 1 in 1 |ali|phd|phdHtm| 667 4 2 -4.70 41 LKGDEMIRGFNDDEGGFIFT

304 MTH435 1 in 1 |ali|phd|phdHtm| 248 9 5 -9.46 74 MISRDHPRYHSLIQREMITE

305 MTH534 1 in 1 |ali|phd|phdHtm| 187 1 7 -1.33 33 MIIKDLRGQGGAEYILLFAA

306 MTH654 1 in 1 |ali|phd|phdHtm| 254 9 5 -25.33 24 MKIGRLTIIDILIILFLASL

307 MTH660 1 in 1 |ali|phd|phdHtm| 102 9 9 -13.08 31 VLPLNSTKKGRLFAILMIAL

308 MTH1453 1 out 34 |ali|phd|phdHtm| 476 4 2 4.01 433 VGDPRSGIEPGTPFEELPDD

309 MTH563 1 out 34 |ali|phd|phdHtm| 293 7 4 7.24 98 MRGSIMILLDEDTRCLVQGI

310 MTH683 1 out 14 |ali|phd|phdHtm| 240 0 5 0.04 163 VITIITQDQLKTSPSVREDG

311 MTH1363 1 out 13 |ali|phd|phdHtm| 1329 9 0 10.29 1322 LRTSVIPVILLMTIMLAGGV

312 MTH800 1 out 13 |ali|phd|phdHtm| 273 2 4 2.44 141 LIRVAVTGACGRMGSGIIRR

313 MTH317 1 out 11 |ali|phd|phdHtm| 826 9 1 46.00 818 VWGWLQDNTTLYNTGKLPPT

314 MTH1159 1 unk 8 |ali|phd|phdHtm| 238 0 5 0.00 238 VVEKKSPAEGWPVVNGDYIV

315 MTH1160 1 unk 6 |ali|phd|phdHtm| 100 0 9 0.00 100 MEMLPLVKIAPEYNLTLDPS

316 MTH1460 1 out 6 |ali|phd|phdHtm| 447 6 2 7.00 123 MRVVLAGTGSAVGKTTIATG

317 MTH1543 1 out 5 |ali|phd|phdHtm| 433 9 2 10.04 325 MTQMDEAKKGVITDEMKAVA

318 MTH270 1 out 5 |ali|phd|phdHtm| 52 5 9 5.16 41 LINNYYMESENENRIVGLLA

319 MTH406 1 out 5 |ali|phd|phdHtm| 211 9 5 41.11 202 MKVKEIMDKEFIAVSPEDRV

320 MTH172 1 out 3 |ali|phd|phdHtm| 332 9 4 20.57 276 MPETYIITPNLNGVSFLEVY

321 MTH479 1 out 3 |ali|phd|phdHtm| 293 9 5 17.67 25 MDRKYIALAAIAAVIIIAIA

322 MTH957 1 out 3 |ali|phd|phdHtm| 385 9 4 14.94 42 MADSITTIVTALGFPSIESF

323 MTH1110 1 out 2 |ali|phd|phdHtm| 151 6 8 6.64 48 VIHLQHTPPAVTALMIPAVL

324 MTH1294 1 out 2 |ali|phd|phdHtm| 155 6 8 6.00 24 VGPVELLAILILAGAIVVLI

325 MTH1426 1 out 2 |ali|phd|phdHtm| 359 1 3 1.28 252 MEMFDGLKIYGSGNYLEGVT

326 MTH231 1 out 2 |ali|phd|phdHtm| 242 1 4 1.64 197 MYGSEGGAMRIVAGVGENRN

327 MTH92 1 out 2 |ali|phd|phdHtm| 70 9 9 18.50 55 MKGEENVNMIVVALTLCIMN

328 MTH1123 1 out 1 |ali|phd|phdHtm| 115 3 9 3.23 81 LNCDKHPEREGVASCIICGR

329 MTH1399 1 out 1 |ali|phd|phdHtm| 300 9 4 10.00 27 MDDCGYVMAGASLLLMIPVI

330 MTH1462 1 out 1 |ali|phd|phdHtm| 338 7 3 8.00 251 MAPAKTFHPLMEDTEHDYHC

331 MTH1533 1 out 1 |ali|phd|phdHtm| 87 6 9 6.12 38 MFSESFLLDESGQSSSEYIL

332 MTH154 1 out 1 |ali|phd|phdHtm| 93 3 9 3.17 79 MIIFSPLVRKVYMEVYNNLI

333 MTH1772 1 out 1 |ali|phd|phdHtm| 131 9 9 16.00 23 MTISVLGVLLIIGTILVFAY

334 MTH1778 1 out 1 |ali|phd|phdHtm| 73 9 9 11.92 30 VIPPRTIYGKAITSILMLVG

335 MTH1857 1 out 1 |ali|phd|phdHtm| 63 9 9 11.43 28 MVLGIPDPWVWGAYILCILI

336 MTH211 1 out 1 |ali|phd|phdHtm| 281 9 4 12.00 28 VFLMDPIPVNVAVTVLVSVA

337 MTH229 1 out 1 |ali|phd|phdHtm| 189 0 7 0.00 184 LSNENTAKTRGYLICTECGG

338 MTH351 1 out 1 |ali|phd|phdHtm| 1561 9 0 17.00 1553 MEGIRVILMAVFLVFVLPGT

339 MTH363 1 out 1 |ali|phd|phdHtm| 273 2 6 2.89 59 MMIRRSGVPAILTVHGWVMD

340 MTH533 1 out 1 |ali|phd|phdHtm| 91 9 9 12.73 36 VTMGPGAGTETPAIGIDVLI

341 MTH54 1 out 1 |ali|phd|phdHtm| 212 9 6 17.00 204 MNGMVGYIIIWDEKTNTGRV

342 MTH58 1 unk 1 |ali|phd|phdHtm| 85 0 9 0.00 85 MTGAIELTGITGKQRVPIDG

343 MTH629 1 out 1 |ali|phd|phdHtm| 57 4 9 4.31 32 VLDHILTRITPATTIIRPAS

344 MTH670 1 out 1 |ali|phd|phdHtm| 94 6 9 6.00 28 MAGSANLVDAMLVLSVGFLI

345 MTH673 1 out 1 |ali|phd|phdHtm| 1708 9 0 24.57 1701 MDIEKFKGGEKIMRKHLITV

346 MTH694 1 out 1 |ali|phd|phdHtm| 198 8 7 8.00 40 VFILFSMAPLSYYHICVDTM

347 MTH714 1 out 1 |ali|phd|phdHtm| 1787 9 0 17.33 1778 LTYNVTALVGNAGNQDTSGV

348 MTH731 1 out 1 |ali|phd|phdHtm| 308 9 4 16.00 298 MCGGPSIGAAVGGSFDAYVV

349 MTH74 1 out 1 |ali|phd|phdHtm| 91 2 9 2.91 53 MKQYISKVEGILLDYESWYK

350 MTH85 1 out 1 |ali|phd|phdHtm| 41 9 9 35.71 27 MITPLYVPNIINARIMAIIH

351 MTH880 1 out 1 |ali|phd|phdHtm| 67 9 9 19.20 64 MEVIVMVEPHKHCPVCSTPI

352 MTH913 1 out 1 |ali|phd|phdHtm| 433 9 3 26.32 414 VFVKKPDETTGPLHAVFVDG

353 MTH928 1 out 1 |ali|phd|phdHtm| 1668 6 0 6.00 1658 VKMIRKRSVTLLITVVFVFM

354 MTH979 1 out 1 |ali|phd|phdHtm| 63 9 9 14.44 34 LHGLIADESGQGSAELILVF

355 MTH995 1 out 1 |ali|phd|phdHtm| 445 2 3 2.91 29 VNTMRVSGFMLTALIIASVI

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
287	MTH978	1	in	165	\|ali\|phd\|phdHtm\|	455	2	3	-2.08	164	MEMIIDGEGVSGEKIFTVRN
288	MTH217	1	in	35	\|ali\|phd\|phdHtm\|	558	1	2	-1.92	165	MSKDTSVLLEEKRVFKPHYT
289	MTH701	1	in	10	\|ali\|phd\|phdHtm\|	425	5	2	-5.60	116	MTALINEFVNRVEFDSYEDF
290	MTH1448	1	in	7	\|ali\|phd\|phdHtm\|	159	4	7	-4.48	43	SIGNALPEPTIDASEMNDRR
291	MTH1157	1	in	6	\|ali\|phd\|phdHtm\|	86	2	9	-2.31	75	MSEEDKTTIPRVLVSADEFN
292	MTH1677	1	in	4	\|ali\|phd\|phdHtm\|	59	9	9	-15.51	54	MKYRESILNFIKQSKRVLRV
293	MTH1219	1	in	3	\|ali\|phd\|phdHtm\|	232	9	5	-32.00	148	VARHSVNLYTGEYNIDPFII
294	MTH1158	1	in	2	\|ali\|phd\|phdHtm\|	68	9	9	-17.10	61	MIILSNKPNIRGIKRVVEDI
295	MTH111	1	in	1	\|ali\|phd\|phdHtm\|	227	0	6	-0.57	54	DTFIDASSFFTGFFCLIDRR
296	MTH1266	1	in	1	\|ali\|phd\|phdHtm\|	79	9	9	-11.21	78	MQHFQCTFIQSGSGGNALWF
297	MTH1411	1	in	1	\|ali\|phd\|phdHtm\|	50	9	9	-16.67	48	VGDIHFKCNLTMVLMTCKGD
298	MTH1545	1	in	1	\|ali\|phd\|phdHtm\|	291	9	4	-10.00	110	VLKKGVNMDMKPLPGMEING
299	MTH1899	1	in	1	\|ali\|phd\|phdHtm\|	57	2	9	-2.27	47	MYSAAPCPASSFKNFILYTS
300	MTH294	1	in	1	\|ali\|phd\|phdHtm\|	154	3	8	-3.11	36	VLQYFDSGGISVDKLTKILI
301	MTH343	1	in	1	\|ali\|phd\|phdHtm\|	328	4	4	-4.97	291	LRVCAVVVTYNRKDLLVECL
302	MTH392	1	in	1	\|ali\|phd\|phdHtm\|	74	4	9	-4.66	43	VRSMNRLRTGSLTALILSAA
303	MTH427	1	in	1	\|ali\|phd\|phdHtm\|	667	4	2	-4.70	41	LKGDEMIRGFNDDEGGFIFT
304	MTH435	1	in	1	\|ali\|phd\|phdHtm\|	248	9	5	-9.46	74	MISRDHPRYHSLIQREMITE
305	MTH534	1	in	1	\|ali\|phd\|phdHtm\|	187	1	7	-1.33	33	MIIKDLRGQGGAEYILLFAA
306	MTH654	1	in	1	\|ali\|phd\|phdHtm\|	254	9	5	-25.33	24	MKIGRLTIIDILIILFLASL
307	MTH660	1	in	1	\|ali\|phd\|phdHtm\|	102	9	9	-13.08	31	VLPLNSTKKGRLFAILMIAL
308	MTH1453	1	out	34	\|ali\|phd\|phdHtm\|	476	4	2	4.01	433	VGDPRSGIEPGTPFEELPDD
309	MTH563	1	out	34	\|ali\|phd\|phdHtm\|	293	7	4	7.24	98	MRGSIMILLDEDTRCLVQGI
310	MTH683	1	out	14	\|ali\|phd\|phdHtm\|	240	0	5	0.04	163	VITIITQDQLKTSPSVREDG
311	MTH1363	1	out	13	\|ali\|phd\|phdHtm\|	1329	9	0	10.29	1322	LRTSVIPVILLMTIMLAGGV
312	MTH800	1	out	13	\|ali\|phd\|phdHtm\|	273	2	4	2.44	141	LIRVAVTGACGRMGSGIIRR
313	MTH317	1	out	11	\|ali\|phd\|phdHtm\|	826	9	1	46.00	818	VWGWLQDNTTLYNTGKLPPT
314	MTH1159	1	unk	8	\|ali\|phd\|phdHtm\|	238	0	5	0.00	238	VVEKKSPAEGWPVVNGDYIV
315	MTH1160	1	unk	6	\|ali\|phd\|phdHtm\|	100	0	9	0.00	100	MEMLPLVKIAPEYNLTLDPS
316	MTH1460	1	out	6	\|ali\|phd\|phdHtm\|	447	6	2	7.00	123	MRVVLAGTGSAVGKTTIATG
317	MTH1543	1	out	5	\|ali\|phd\|phdHtm\|	433	9	2	10.04	325	MTQMDEAKKGVITDEMKAVA
318	MTH270	1	out	5	\|ali\|phd\|phdHtm\|	52	5	9	5.16	41	LINNYYMESENENRIVGLLA
319	MTH406	1	out	5	\|ali\|phd\|phdHtm\|	211	9	5	41.11	202	MKVKEIMDKEFIAVSPEDRV
320	MTH172	1	out	3	\|ali\|phd\|phdHtm\|	332	9	4	20.57	276	MPETYIITPNLNGVSFLEVY
321	MTH479	1	out	3	\|ali\|phd\|phdHtm\|	293	9	5	17.67	25	MDRKYIALAAIAAVIIIAIA
322	MTH957	1	out	3	\|ali\|phd\|phdHtm\|	385	9	4	14.94	42	MADSITTIVTALGFPSIESF
323	MTH1110	1	out	2	\|ali\|phd\|phdHtm\|	151	6	8	6.64	48	VIHLQHTPPAVTALMIPAVL
324	MTH1294	1	out	2	\|ali\|phd\|phdHtm\|	155	6	8	6.00	24	VGPVELLAILILAGAIVVLI
325	MTH1426	1	out	2	\|ali\|phd\|phdHtm\|	359	1	3	1.28	252	MEMFDGLKIYGSGNYLEGVT
326	MTH231	1	out	2	\|ali\|phd\|phdHtm\|	242	1	4	1.64	197	MYGSEGGAMRIVAGVGENRN
327	MTH92	1	out	2	\|ali\|phd\|phdHtm\|	70	9	9	18.50	55	MKGEENVNMIVVALTLCIMN
328	MTH1123	1	out	1	\|ali\|phd\|phdHtm\|	115	3	9	3.23	81	LNCDKHPEREGVASCIICGR
329	MTH1399	1	out	1	\|ali\|phd\|phdHtm\|	300	9	4	10.00	27	MDDCGYVMAGASLLLMIPVI
330	MTH1462	1	out	1	\|ali\|phd\|phdHtm\|	338	7	3	8.00	251	MAPAKTFHPLMEDTEHDYHC
331	MTH1533	1	out	1	\|ali\|phd\|phdHtm\|	87	6	9	6.12	38	MFSESFLLDESGQSSSEYIL
332	MTH154	1	out	1	\|ali\|phd\|phdHtm\|	93	3	9	3.17	79	MIIFSPLVRKVYMEVYNNLI
333	MTH1772	1	out	1	\|ali\|phd\|phdHtm\|	131	9	9	16.00	23	MTISVLGVLLIIGTILVFAY
334	MTH1778	1	out	1	\|ali\|phd\|phdHtm\|	73	9	9	11.92	30	VIPPRTIYGKAITSILMLVG
335	MTH1857	1	out	1	\|ali\|phd\|phdHtm\|	63	9	9	11.43	28	MVLGIPDPWVWGAYILCILI
336	MTH211	1	out	1	\|ali\|phd\|phdHtm\|	281	9	4	12.00	28	VFLMDPIPVNVAVTVLVSVA
337	MTH229	1	out	1	\|ali\|phd\|phdHtm\|	189	0	7	0.00	184	LSNENTAKTRGYLICTECGG
338	MTH351	1	out	1	\|ali\|phd\|phdHtm\|	1561	9	0	17.00	1553	MEGIRVILMAVFLVFVLPGT
339	MTH363	1	out	1	\|ali\|phd\|phdHtm\|	273	2	6	2.89	59	MMIRRSGVPAILTVHGWVMD
340	MTH533	1	out	1	\|ali\|phd\|phdHtm\|	91	9	9	12.73	36	VTMGPGAGTETPAIGIDVLI
341	MTH54	1	out	1	\|ali\|phd\|phdHtm\|	212	9	6	17.00	204	MNGMVGYIIIWDEKTNTGRV
342	MTH58	1	unk	1	\|ali\|phd\|phdHtm\|	85	0	9	0.00	85	MTGAIELTGITGKQRVPIDG
343	MTH629	1	out	1	\|ali\|phd\|phdHtm\|	57	4	9	4.31	32	VLDHILTRITPATTIIRPAS
344	MTH670	1	out	1	\|ali\|phd\|phdHtm\|	94	6	9	6.00	28	MAGSANLVDAMLVLSVGFLI
345	MTH673	1	out	1	\|ali\|phd\|phdHtm\|	1708	9	0	24.57	1701	MDIEKFKGGEKIMRKHLITV
346	MTH694	1	out	1	\|ali\|phd\|phdHtm\|	198	8	7	8.00	40	VFILFSMAPLSYYHICVDTM
347	MTH714	1	out	1	\|ali\|phd\|phdHtm\|	1787	9	0	17.33	1778	LTYNVTALVGNAGNQDTSGV
348	MTH731	1	out	1	\|ali\|phd\|phdHtm\|	308	9	4	16.00	298	MCGGPSIGAAVGGSFDAYVV
349	MTH74	1	out	1	\|ali\|phd\|phdHtm\|	91	2	9	2.91	53	MKQYISKVEGILLDYESWYK
350	MTH85	1	out	1	\|ali\|phd\|phdHtm\|	41	9	9	35.71	27	MITPLYVPNIINARIMAIIH
351	MTH880	1	out	1	\|ali\|phd\|phdHtm\|	67	9	9	19.20	64	MEVIVMVEPHKHCPVCSTPI
352	MTH913	1	out	1	\|ali\|phd\|phdHtm\|	433	9	3	26.32	414	VFVKKPDETTGPLHAVFVDG
353	MTH928	1	out	1	\|ali\|phd\|phdHtm\|	1668	6	0	6.00	1658	VKMIRKRSVTLLITVVFVFM
354	MTH979	1	out	1	\|ali\|phd\|phdHtm\|	63	9	9	14.44	34	LHGLIADESGQGSAELILVF
355	MTH995	1	out	1	\|ali\|phd\|phdHtm\|	445	2	3	2.91	29	VNTMRVSGFMLTALIIASVI

Top - Previous - Next - CUBIC - PP home