--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Methanococcus jannaschii --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 238 MJ1411 1 in 74 463 0 2 -0.48 156 MFIDGKWINREDMDVINPYS REGVKYAMEEMSNIXTIIIS 239 MJ0715 1 in 11 338 4 3 -4.36 217 MKISIYGAGNQRLYLEQLKV SLIGKSAVEGMIRRSSNKLF 240 MJ0892 1 in 10 217 7 7 -7.80 37 MKVFEFLKGKRGAMGIGTLI AVIEFTTPAAYLSTQEVIQL 241 MJ0893 1 in 10 223 9 7 -11.21 44 LRLRWPNMLLDYIKSRRGAI ASGIIEFRAPSTFSEHVVTL 242 MJ0891 1 in 9 217 8 7 -8.23 37 MKVFEFLKGKRGAMGIGTLI APAVIQFTTPAAYTQTVIEL 243 MJ1057 1 in 6 290 1 4 -1.38 267 MVGEMDKPLVSVVMATYNEP FILKILIDIKDKKTEISTKG 244 MJ1400 1 in 3 67 6 9 -6.66 38 MKFIMKFIKSNKGQISLEFS ANMDVINQSSNVAEKSLSNV 245 MJ0431 1 in 2 75 7 9 -7.60 39 VGKMKILKKLLSKKGQLSME AAFINVTANKSQEYISNLSN 246 MJ0536 1 in 2 187 4 5 -4.93 146 VNKRRVKMRKEIRLSGFGGQ KGTEEKNLLAFSKGYEVAKE 247 MJ0889 1 in 2 469 9 3 -24.00 296 VVGFMIALSVSSGYLLDNNY GSEIPSEKGINISIFEIKII 248 MJ1107 1 in 2 149 7 8 -7.33 143 MKFFVVFVMAVAYSKLYELI LIIILANYAPSIIGKILSFL 249 MJ1324 1 in 2 234 3 5 -3.31 205 MRVIGVIGYKDSGKTTLIEE TLKGVDNPKTIKVEIDVSKL 250 MJ1386 1 in 2 74 0 9 -0.25 35 LKIYDAVVKTTFQISTSIFF FGFTVLGLGIGMIFGDAGLD 251 MJ0150 1 in 1 173 2 7 -2.42 58 MGDVKMDKELLHKKIKKDIE CCGKGDEYCEFLVKIEDKLY 252 MJ0209 1 in 1 266 8 5 -8.67 81 MLSVMRMQIPKTHPRYESLM NLKDMIDYIAERLKNLSLDE 253 MJ0270 1 in 1 78 9 9 -18.22 37 MKNKREKMRPKSSTILILLM IPINASFNKIKSQLEKSMKF 254 MJ0289 1 in 1 338 9 3 -11.38 31 VFEMKNSTRYILSLLLSIIM VPTPLPSGCYGGSITFYGLG 255 MJ0371 1 in 1 74 2 9 -2.50 59 MKTDFNQKIEQLKEFIEECR IIHVPATYIKGILKPPTTPR 256 MJ0597 1 in 1 357 4 4 -4.00 268 LTIGREKMKVEEILENARKA ENINERIESYVSKVLRKIKA 257 MJ0635 1 in 1 283 9 3 -17.00 22 VKFMRIVRILAILLALIIGT IKLDGQYLIVTVEGPEDELK 258 MJ0699 1 in 1 380 1 3 -2.00 360 MVVFLLLKSQFLYGEDFKLR SVVTRCEKGDVVDFSLMENE 259 MJ0830 1 in 1 252 9 5 -20.14 49 VVFLKKLIKLKNNLKEKFKN KKFKDYGFKKVCINLEIYRS 260 MJ0833 1 in 1 277 9 4 -17.00 22 LFMKSLIKLIVFIVLCSLFL FTTSSNQPIRFYYIIYYKYN 261 MJ0945 1 in 1 224 6 5 -7.00 38 MLLRQYINVPRLGEIMNLKE GGIGIGGGRAYYDNVRVEPI 262 MJ0954 1 in 1 440 9 3 -12.00 33 LLRLQMMEGLIVKRTLLLIL KYNDEDTLMVEWDKGEIKII 263 MJ0966 1 in 1 444 4 2 -4.00 110 VIKMIKNVAIIYPNKFKAGI RLLDKYLGRFEDKGVWKNII 264 MJ1128 1 in 1 308 9 4 -17.00 26 VILMKKFEIILFLFIAVLIF LWLYNKTGDEIYLKYYKKWR 265 MJ1157 1 in 1 341 2 3 -2.29 32 MLDSPHNLYIKKFMLCYIIY FPCSGNICKVCSWLIKLKEI 266 MJ1283 1 in 1 220 3 6 -3.38 31 MVEMNKRGQFFIIGGVILSI LLYLLWQRMFLTTHWQKMYP 267 MJ1284 1 in 1 121 9 9 -14.67 30 MILNNKGFIRILEATIAGIM FIFENNTSVNFYKLRLILWW 268 MJ1338 1 in 1 353 4 3 -4.00 227 MRNIRKIKVDNMKVSVYGAG LIGGAAAEGAIKRSARKLFE 269 MJ1373 1 in 1 162 9 6 -48.00 23 MKKKIIILFLFTAILCSITL TYPYIKLSVNGTYNVECKEV 270 MJ1394 1 in 1 987 6 1 -6.00 28 VMWGMPNIKLKFIYLCILLF ILINVIFGLGILTKRNIRNN 271 MJ1402 1 in 1 346 9 4 -21.43 32 MFEWMKNKKAISPILALLIV VVSDQGVYKQVDVNIVLKDR 272 MJ1403 1 in 1 374 9 3 -12.13 49 MTVSHGGILEGSSRGGKMMD VVSNEGVTKEVKVKFTVYDD 273 MJ1440 1 in 1 282 1 5 -1.09 227 MEGKAYALASGTIINAIATG KLNRYGKVILTKPNNDGASI 274 MJ1442 1 in 1 202 9 6 -9.33 33 MTSIRIFIKFYGGTMRKFLI LYPDTNEIVVGYYKGKIYSS 275 MJ1470 1 in 1 624 9 2 -10.67 33 MFRKIVSKRGYIFTYEAIVI ENTDFYYLTLSPNNVTIVVK 276 MJ1477 1 in 1 346 9 3 -15.25 34 VHLNKIRGKNMKKSHILGII YVAKSDRELDELNTWWLKLI 277 MJ1482 1 in 1 309 9 3 -14.00 110 MDLQNDIIVRGKSYEMPFSK RLKTMIELEGLSEEDMLEEG 278 MJ1651 1 in 1 263 1 5 -1.79 77 LGIYMRDDILDIITLTTDFG FMDNASKLLNVDYLDEIEII 279 MJ1666 1 in 1 465 9 2 -12.00 258 MQKILIAPWGNFSSWKKVIY KNGKVEEINILEKIEEILLN 280 MJECL15 1 in 1 365 8 3 -8.00 187 MKFFNREKEINEILLILEEE PQKGTLKPQSYLVWNAIKRM 281 MJECL16 1 in 1 70 9 9 -20.41 67 MSILISNKQFNHGLKDEFAT FYLLVFFIILWVSREAFFYL 282 MJECL24 1 out 11 259 0 4 0.88 153 MVVISIANQKGGVGKTTIAL ANNPASVAFSELAEWVIENV 283 MJ0422 1 out 9 290 2 4 2.24 157 MRVIILKIKKIFMVMIMIKV ADKKEGIYNTFDVLGLNEIK 284 MJ0960 1 out 9 217 2 5 2.60 127 MKFFLDTANVEEIKKYAELG LTDIGLERFLKDWDEYLKSR 285 MJ0230 1 out 7 87 9 9 18.31 45 LFVGEIMPMGFGVHYVGSEG KDVEEIKEIVKELKKKWEEI 286 MJ0260 1 out 7 203 0 6 0.53 189 LVVLFLIWSHVNVVVSDSMY YLVVLFVLIYYAYNYLKGGR 287 MJ0853 1 out 7 84 5 9 5.01 72 MSEDEKLPQVIMDPADYEAL YILPALIKIIQILSLKVLVQ 288 MJ0852 1 out 4 68 9 9 11.51 64 MGVEVSNKPNVSSIQSYVED IGVVSAIVLMGIPLALYFLM 289 MJ0269 1 out 3 178 8 7 8.51 139 MIEIRFHGRGGQGAVTAAQI LGEKNAKAAEVAYNEMLKKY 290 MJ0544 1 out 3 229 3 4 4.00 147 MIAIIPAFNEEKNILKVLKD YITTKKILEVAKQVIKFIFL 291 MJ0546 1 unk 3 56 0 9 0.00 18 MILYIIVAISILLNIILGIK RLTKEEVEKLNERIRKLKLG 292 MJ0185 1 out 2 49 9 9 16.53 38 MCYGIIVMILFSLYKGLAPN MIIIAIGIYLIIEYAIKKII 293 MJ0813 1 out 2 249 2 4 2.72 121 MLYVVGIGSGNERHFTKEAE STKIINGKMITPRGYLDKYK 294 MJ1371 1 out 2 244 9 4 9.77 210 VIIMYAIGIGDNKEEVLKAY RNANWERYYNAIKFLIGGDF 295 MJ1576 1 unk 2 189 0 9 0.00 25 MLMLLLIIVGLILALIVLGI FRKMDYLQFEEEIYERPKIS 296 MJ0068 1 out 1 115 7 9 7.98 75 MPNYHVTLQAAYIVRNVDDV TIGKVLKNIPLEPVDVVELE 297 MJ0163 1 unk 1 187 0 7 0.00 20 MDAIIIFLILFIVGVLIGVG KYFSTITTIEQEIPEEALLS 298 MJ0219 1 out 1 399 9 5 16.00 50 MAMDIETLLDLEKLYSAIMT IIKGKIENLKPEEIRSLLIS 299 MJ0521 1 out 1 69 4 9 4.58 42 VKNMDEERKYGLYSLIIGLL GAFIIPKTRRKDAGKLPFRG 300 MJ0525 1 out 1 53 9 9 12.50 37 MLNVEVPTIGVSLIFLAYDE VLSLILIRAVILDAEYKENN 301 MJ0621 1 out 1 172 9 7 9.05 153 MKACERLLLKIESQEKFVEE IIPEKDAFMKALEIIAKKIN 302 MJ0701 1 out 1 414 3 3 4.00 124 VIIMLSEYLEEFKEYLERFK KHLKKERFKKIKKEDKNGDN 303 MJ0816 1 out 1 297 0 3 0.00 152 MQDKQLLQLKEQIINDIKKR EVYKGFKEPTDASEEILSMI 304 MJ0850 1 out 1 103 9 9 10.00 98 MATYVFIDQNIPLVYTVETG FGFWIGLGIMALLAIILGVK 305 MJ0851 1 unk 1 245 0 5 0.00 245 MVMSMANKREPAPGWPIVSG KIQGIATGLFLMLLIMGILM 306 MJ0898 1 out 1 154 9 9 16.00 31 VIYLASSAMSEIVMFVAVLL YHRIKVISECGISRIIRGYI 307 MJ1004 1 out 1 214 9 5 34.00 202 MKVRDLMDKNFAKIYVDETV GLIEIGMVALARKLAKRRKG 308 MJ1072 1 out 1 116 2 9 2.22 107 MIYFGGIMAIAYAKLYEIIA LLYILTNPNAIELIKLLFGV 309 MJ1087 1 out 1 312 0 3 0.00 123 MIIETPSKVILFGEHAVVYG KELLKELNKEDVRIFNCRMM 310 MJ1140 1 out 1 257 1 4 1.71 67 LLSFQQVVKIHLILRCLSPQ ENSIDAVGIYKKDKSKVVRF 311 MJ1280 1 out 1 157 9 9 36.00 25 MNLILTLLIIFAIIGLLILI EAEDFVEDVVDDFDNGGDDD 312 MJ1395 1 out 1 132 9 9 32.44 123 MDVNVSYKDTYSVITYQVWE WLSILCILIIIFVYTELRRK 313 MJ1457 1 out 1 135 9 9 20.00 27 VMVMTALTLLILFFGLAFIL VIEDITDEIDNITNDIGDSF 314 MJ1483 1 out 1 152 1 8 2.00 28 LINMDKTLSVIVFLISLIII VGNNLIIKANDISGIRWRYL 315 MJ1558 1 out 1 90 7 9 7.64 53 MSRVVVSVIGQDRTGIVAGI EELGVQVIVQHXDIFKYMHR 316 MJ1561 1 out 1 553 9 2 37.45 542 MITNKIKIFLISLIFISGVY VIAIVLVVGYVFKRKNSKDK 317 MJ1588 1 out 1 112 9 9 15.29 95 MVGNAYTLFEGNSADDLYKA VSGFLGNYYLKKKAKEKMKE 318 MJECL44 1 out 1 331 5 3 5.95 288 LFIKWGDRLMTKTLHLTKVT SWSNTLKEENKTTLLMPDFL