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Transmembrane helices for hs22 (human Chromosome 22)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

82 c22000501 1 in 240 |ali|phd|phdHtm| 834 9 1 -10.68 98 MVLRAGGLLQAPVAIGAQSP

83 c22000213 1 in 177 |ali|phd|phdHtm| 270 9 4 -9.56 118 MAWNPLLLLFLSHCTGSLSQ

84 c22000584 1 in 24 |ali|phd|phdHtm| 80 3 9 -3.68 34 MRILVNLLLDTLPMLGNVLL

85 c22000360 1 in 11 |ali|phd|phdHtm| 295 7 6 -7.20 288 MCRLWEVSLAGMPALLVSLA

86 c22000598 1 in 11 |ali|phd|phdHtm| 1490 3 0 -4.00 986 MPLKKEAMNLRGGKGGHRSD

87 c22000689 1 in 10 |ali|phd|phdHtm| 143 1 9 -1.55 61 MQKTWPFSLLLSLALQSLKQ

88 c22000302 1 in 9 |ali|phd|phdHtm| 568 0 1 -0.60 28 MARGYGATVSLVLLGLGLAL

89 c22000688 1 in 6 |ali|phd|phdHtm| 238 1 4 -1.00 230 MTSWVSSSPSPPLSPSSLSH

90 c22000560 1 in 5 |ali|phd|phdHtm| 791 9 2 -12.00 596 MELSAVGERVFAAESIIKRR

91 c22000403 1 in 3 |ali|phd|phdHtm| 41 5 9 -5.00 30 MAAPKGLLLVALVLLLASCK

92 c22000172 1 in 2 |ali|phd|phdHtm| 292 6 6 -6.00 252 MAATQELLLQLQKDNRDGRQ

93 c22000799 1 in 2 |ali|phd|phdHtm| 64 0 9 -0.27 49 MQDAPSMGQASEAVPGLVAW

94 c22000087 1 in 1 |ali|phd|phdHtm| 212 4 6 -4.00 201 MASSRASSCSLSKAPSAWPR

95 c22000097 1 in 1 |ali|phd|phdHtm| 105 0 9 -0.11 61 MSLCARAEGPPPCAWGFWAV

96 c22000110 1 in 1 |ali|phd|phdHtm| 55 9 9 -11.70 36 MPRSPGTRLKPAKYIPVATA

97 c22000112 1 in 1 |ali|phd|phdHtm| 230 3 6 -3.50 190 MGGALASPRVALSQLQCGLL

98 c22000142 1 in 1 |ali|phd|phdHtm| 373 4 3 -4.24 339 MCRATLGLPLPPIVIQPARR

99 c22000372 1 in 1 |ali|phd|phdHtm| 1057 3 1 -4.00 310 MPFLRPCVLLLQESKPLAWS

100 c22000465 1 in 1 |ali|phd|phdHtm| 202 4 7 -4.00 177 MTAKGLAMFSCLSVPVQEAA

101 c22000556 1 in 1 |ali|phd|phdHtm| 755 4 1 -4.00 269 MKDKDKETENWEACGKRPGR

102 c22000712 1 in 1 |ali|phd|phdHtm| 351 4 4 -4.11 294 MPPLWALLALGCLRFGSAVN

103 c22000782 1 in 1 |ali|phd|phdHtm| 63 6 9 -6.82 40 MDAAWFLPESSPCLLLKAPD

104 c22000050 1 out 79 |ali|phd|phdHtm| 1120 5 1 5.26 1082 MLSKAYKYSSPKFRHGKAVG

105 c22000491 1 out 57 |ali|phd|phdHtm| 735 8 1 8.00 399 MWDGAPEVGPSSSCLSLSLS

106 c22000408 1 out 28 |ali|phd|phdHtm| 402 9 3 20.00 289 MDFSICISNITPADAGTYYC

107 c22000772 1 unk 11 |ali|phd|phdHtm| 71 0 9 0.00 21 MAMVMVVLPLPFLLLLLFLL

108 c22000405 1 out 10 |ali|phd|phdHtm| 76 9 9 11.42 38 MSNTAQGSNIFERMEVVAVL

109 c22000134 1 out 7 |ali|phd|phdHtm| 89 2 9 2.23 74 MQMNPVLWEAGPHPECHVRV

110 c22000422 1 unk 5 |ali|phd|phdHtm| 231 0 4 0.00 231 MASKGPSASASPENSSAGGP

111 c22000630 1 out 5 |ali|phd|phdHtm| 1040 9 1 10.64 418 MDDSGELGGLETMETLTELG

112 c22000439 1 out 4 |ali|phd|phdHtm| 468 0 3 0.60 94 MPLGRPRGTFACPDLPLQTT

113 c22000494 1 out 4 |ali|phd|phdHtm| 934 6 1 6.00 496 MVLAQGLLSMALLALCWERS

114 c22000055 1 out 3 |ali|phd|phdHtm| 110 4 9 4.32 32 MAQDYGAWVTWFLLGLGLGL

115 c22000103 1 out 3 |ali|phd|phdHtm| 271 8 6 8.00 34 MPEAPPLLLAAVLLGLVLLV

116 c22000502 1 out 3 |ali|phd|phdHtm| 537 3 2 4.00 250 MAAPALSWRLPLLILLLPLA

117 c22000225 1 out 2 |ali|phd|phdHtm| 101 9 9 16.56 22 MVGLVLLGLGLALAVIVLAV

118 c22000662 1 out 2 |ali|phd|phdHtm| 134 6 9 6.33 127 MEVLGMTDSEEDLDPMEDFD

119 c22000701 1 out 2 |ali|phd|phdHtm| 57 0 9 0.85 45 MPFQVWRAACASLAAAPSYG

120 c22000838 1 out 2 |ali|phd|phdHtm| 240 9 6 10.35 80 MAVPQQLGHNPLHHHPKLRP

121 c22000022 1 out 1 |ali|phd|phdHtm| 246 8 5 8.00 137 MYRDKLLPDRSASHNPMYQK

122 c22000041 1 out 1 |ali|phd|phdHtm| 400 9 3 52.00 395 MKNHSPLTEGVQLDIASQSL

123 c22000046 1 out 1 |ali|phd|phdHtm| 288 9 4 28.86 281 MALGTVFSLESEEEEYPGIT

124 c22000301 1 out 1 |ali|phd|phdHtm| 916 9 1 28.36 905 MKPALLPWALLLLATALGPG

125 c22000339 1 out 1 |ali|phd|phdHtm| 375 6 4 6.78 316 MTLPLLCPPSLNLSNSDILT

126 c22000425 1 out 1 |ali|phd|phdHtm| 263 8 5 8.00 189 MLLAWVQAFLVSNMLLAEAY

127 c22000571 1 out 1 |ali|phd|phdHtm| 121 7 9 7.83 41 MANPASHWLSVSMLGACILW

128 c22000577 1 out 1 |ali|phd|phdHtm| 463 9 2 9.19 45 MAGAGERKGKKDDNGIGTAI

129 c22000631 1 out 1 |ali|phd|phdHtm| 397 0 2 0.00 160 MARAGARGLLGGRRPPGLRL

130 c22000632 1 out 1 |ali|phd|phdHtm| 255 9 5 20.00 168 MASRCIIPCPGPPALDVGHS

131 c22000634 1 out 1 |ali|phd|phdHtm| 68 9 9 14.29 26 MPHFLDWFVPVYLVISVLIL

132 c22000645 1 out 1 |ali|phd|phdHtm| 259 4 4 4.95 200 MENQPVRWRALPGLPRPPGL

133 c22000730 1 out 1 |ali|phd|phdHtm| 74 6 9 6.55 40 MHPAKTGLTDSLAFGGGLPG

134 c22000743 1 out 1 |ali|phd|phdHtm| 286 6 4 6.49 75 MQSDPAVVSAKASGYDGQSN

135 c22000755 1 out 1 |ali|phd|phdHtm| 291 8 4 8.00 187 MMAASSTVYGAQHPPFDPLL

136 c22000765 1 out 1 |ali|phd|phdHtm| 187 0 7 0.42 163 MLGLAVGLPALLPHTGLGGR

137 c22000767 1 out 1 |ali|phd|phdHtm| 79 3 9 3.74 44 MQEGPVGALLCSWAPGVGLS

138 c22000787 1 out 1 |ali|phd|phdHtm| 310 9 6 24.00 31 MLCVCVCVCVCVCVVGWLGA

139 c22000818 1 out 1 |ali|phd|phdHtm| 40 0 9 0.00 35 MLASAGFSLTSPGLMWTLGL

140 c22000822 1 out 1 |ali|phd|phdHtm| 70 9 9 13.16 32 MHTFALSLSVSLSLSLSLSL

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
82	c22000501	1	in	240	\|ali\|phd\|phdHtm\|	834	9	1	-10.68	98	MVLRAGGLLQAPVAIGAQSP
83	c22000213	1	in	177	\|ali\|phd\|phdHtm\|	270	9	4	-9.56	118	MAWNPLLLLFLSHCTGSLSQ
84	c22000584	1	in	24	\|ali\|phd\|phdHtm\|	80	3	9	-3.68	34	MRILVNLLLDTLPMLGNVLL
85	c22000360	1	in	11	\|ali\|phd\|phdHtm\|	295	7	6	-7.20	288	MCRLWEVSLAGMPALLVSLA
86	c22000598	1	in	11	\|ali\|phd\|phdHtm\|	1490	3	0	-4.00	986	MPLKKEAMNLRGGKGGHRSD
87	c22000689	1	in	10	\|ali\|phd\|phdHtm\|	143	1	9	-1.55	61	MQKTWPFSLLLSLALQSLKQ
88	c22000302	1	in	9	\|ali\|phd\|phdHtm\|	568	0	1	-0.60	28	MARGYGATVSLVLLGLGLAL
89	c22000688	1	in	6	\|ali\|phd\|phdHtm\|	238	1	4	-1.00	230	MTSWVSSSPSPPLSPSSLSH
90	c22000560	1	in	5	\|ali\|phd\|phdHtm\|	791	9	2	-12.00	596	MELSAVGERVFAAESIIKRR
91	c22000403	1	in	3	\|ali\|phd\|phdHtm\|	41	5	9	-5.00	30	MAAPKGLLLVALVLLLASCK
92	c22000172	1	in	2	\|ali\|phd\|phdHtm\|	292	6	6	-6.00	252	MAATQELLLQLQKDNRDGRQ
93	c22000799	1	in	2	\|ali\|phd\|phdHtm\|	64	0	9	-0.27	49	MQDAPSMGQASEAVPGLVAW
94	c22000087	1	in	1	\|ali\|phd\|phdHtm\|	212	4	6	-4.00	201	MASSRASSCSLSKAPSAWPR
95	c22000097	1	in	1	\|ali\|phd\|phdHtm\|	105	0	9	-0.11	61	MSLCARAEGPPPCAWGFWAV
96	c22000110	1	in	1	\|ali\|phd\|phdHtm\|	55	9	9	-11.70	36	MPRSPGTRLKPAKYIPVATA
97	c22000112	1	in	1	\|ali\|phd\|phdHtm\|	230	3	6	-3.50	190	MGGALASPRVALSQLQCGLL
98	c22000142	1	in	1	\|ali\|phd\|phdHtm\|	373	4	3	-4.24	339	MCRATLGLPLPPIVIQPARR
99	c22000372	1	in	1	\|ali\|phd\|phdHtm\|	1057	3	1	-4.00	310	MPFLRPCVLLLQESKPLAWS
100	c22000465	1	in	1	\|ali\|phd\|phdHtm\|	202	4	7	-4.00	177	MTAKGLAMFSCLSVPVQEAA
101	c22000556	1	in	1	\|ali\|phd\|phdHtm\|	755	4	1	-4.00	269	MKDKDKETENWEACGKRPGR
102	c22000712	1	in	1	\|ali\|phd\|phdHtm\|	351	4	4	-4.11	294	MPPLWALLALGCLRFGSAVN
103	c22000782	1	in	1	\|ali\|phd\|phdHtm\|	63	6	9	-6.82	40	MDAAWFLPESSPCLLLKAPD
104	c22000050	1	out	79	\|ali\|phd\|phdHtm\|	1120	5	1	5.26	1082	MLSKAYKYSSPKFRHGKAVG
105	c22000491	1	out	57	\|ali\|phd\|phdHtm\|	735	8	1	8.00	399	MWDGAPEVGPSSSCLSLSLS
106	c22000408	1	out	28	\|ali\|phd\|phdHtm\|	402	9	3	20.00	289	MDFSICISNITPADAGTYYC
107	c22000772	1	unk	11	\|ali\|phd\|phdHtm\|	71	0	9	0.00	21	MAMVMVVLPLPFLLLLLFLL
108	c22000405	1	out	10	\|ali\|phd\|phdHtm\|	76	9	9	11.42	38	MSNTAQGSNIFERMEVVAVL
109	c22000134	1	out	7	\|ali\|phd\|phdHtm\|	89	2	9	2.23	74	MQMNPVLWEAGPHPECHVRV
110	c22000422	1	unk	5	\|ali\|phd\|phdHtm\|	231	0	4	0.00	231	MASKGPSASASPENSSAGGP
111	c22000630	1	out	5	\|ali\|phd\|phdHtm\|	1040	9	1	10.64	418	MDDSGELGGLETMETLTELG
112	c22000439	1	out	4	\|ali\|phd\|phdHtm\|	468	0	3	0.60	94	MPLGRPRGTFACPDLPLQTT
113	c22000494	1	out	4	\|ali\|phd\|phdHtm\|	934	6	1	6.00	496	MVLAQGLLSMALLALCWERS
114	c22000055	1	out	3	\|ali\|phd\|phdHtm\|	110	4	9	4.32	32	MAQDYGAWVTWFLLGLGLGL
115	c22000103	1	out	3	\|ali\|phd\|phdHtm\|	271	8	6	8.00	34	MPEAPPLLLAAVLLGLVLLV
116	c22000502	1	out	3	\|ali\|phd\|phdHtm\|	537	3	2	4.00	250	MAAPALSWRLPLLILLLPLA
117	c22000225	1	out	2	\|ali\|phd\|phdHtm\|	101	9	9	16.56	22	MVGLVLLGLGLALAVIVLAV
118	c22000662	1	out	2	\|ali\|phd\|phdHtm\|	134	6	9	6.33	127	MEVLGMTDSEEDLDPMEDFD
119	c22000701	1	out	2	\|ali\|phd\|phdHtm\|	57	0	9	0.85	45	MPFQVWRAACASLAAAPSYG
120	c22000838	1	out	2	\|ali\|phd\|phdHtm\|	240	9	6	10.35	80	MAVPQQLGHNPLHHHPKLRP
121	c22000022	1	out	1	\|ali\|phd\|phdHtm\|	246	8	5	8.00	137	MYRDKLLPDRSASHNPMYQK
122	c22000041	1	out	1	\|ali\|phd\|phdHtm\|	400	9	3	52.00	395	MKNHSPLTEGVQLDIASQSL
123	c22000046	1	out	1	\|ali\|phd\|phdHtm\|	288	9	4	28.86	281	MALGTVFSLESEEEEYPGIT
124	c22000301	1	out	1	\|ali\|phd\|phdHtm\|	916	9	1	28.36	905	MKPALLPWALLLLATALGPG
125	c22000339	1	out	1	\|ali\|phd\|phdHtm\|	375	6	4	6.78	316	MTLPLLCPPSLNLSNSDILT
126	c22000425	1	out	1	\|ali\|phd\|phdHtm\|	263	8	5	8.00	189	MLLAWVQAFLVSNMLLAEAY
127	c22000571	1	out	1	\|ali\|phd\|phdHtm\|	121	7	9	7.83	41	MANPASHWLSVSMLGACILW
128	c22000577	1	out	1	\|ali\|phd\|phdHtm\|	463	9	2	9.19	45	MAGAGERKGKKDDNGIGTAI
129	c22000631	1	out	1	\|ali\|phd\|phdHtm\|	397	0	2	0.00	160	MARAGARGLLGGRRPPGLRL
130	c22000632	1	out	1	\|ali\|phd\|phdHtm\|	255	9	5	20.00	168	MASRCIIPCPGPPALDVGHS
131	c22000634	1	out	1	\|ali\|phd\|phdHtm\|	68	9	9	14.29	26	MPHFLDWFVPVYLVISVLIL
132	c22000645	1	out	1	\|ali\|phd\|phdHtm\|	259	4	4	4.95	200	MENQPVRWRALPGLPRPPGL
133	c22000730	1	out	1	\|ali\|phd\|phdHtm\|	74	6	9	6.55	40	MHPAKTGLTDSLAFGGGLPG
134	c22000743	1	out	1	\|ali\|phd\|phdHtm\|	286	6	4	6.49	75	MQSDPAVVSAKASGYDGQSN
135	c22000755	1	out	1	\|ali\|phd\|phdHtm\|	291	8	4	8.00	187	MMAASSTVYGAQHPPFDPLL
136	c22000765	1	out	1	\|ali\|phd\|phdHtm\|	187	0	7	0.42	163	MLGLAVGLPALLPHTGLGGR
137	c22000767	1	out	1	\|ali\|phd\|phdHtm\|	79	3	9	3.74	44	MQEGPVGALLCSWAPGVGLS
138	c22000787	1	out	1	\|ali\|phd\|phdHtm\|	310	9	6	24.00	31	MLCVCVCVCVCVCVVGWLGA
139	c22000818	1	out	1	\|ali\|phd\|phdHtm\|	40	0	9	0.00	35	MLASAGFSLTSPGLMWTLGL
140	c22000822	1	out	1	\|ali\|phd\|phdHtm\|	70	9	9	13.16	32	MHTFALSLSVSLSLSLSLSL

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