--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 hpa1234299_i 17 out 6 697 0 0 -0.53 37,62,118,140,192,220,248,286,311,352,396,468,490,540,575,602,671 MIKQSLNGEDMQKSLVSLAW NAYFKNKIYPPLAETPYIKA 2 hpa0386015_n 14 in 16 936 5 0 -5.20 30,70,101,327,359,554,653,686,718,782,826,859,890,925 MKNLKSLLSFLLASFWVAIP IPFALVILAYFKRHLSLPKL 3 hpa1342970_n 14 out 426 612 0 0 -0.58 53,101,133,155,196,226,265,291,345,393,426,471,509,606 MQYSSLLSVVLFLPLIGAIY MLRFMVAGVLILLAFVAFFG 4 hpa0150342_n 14 out 7 549 8 0 8.57 36,58,90,129,151,177,214,240,266,313,381,419,449,541 MEFYQVYDPLGHIWLSALVA MGIVFTLIAYVFPFIIPIIP 5 hpa1344812_n 13 in 54 512 2 0 -2.39 26,50,99,138,179,226,259,291,319,343,386,423,472 MQFLHAHLLSVVIFFPMLSA RSLPFLGSLDTKIKEVSYVN 6 hpa0152144_n 13 in 6 519 8 0 -8.67 29,59,98,120,148,182,209,236,282,353,390,420,511 MVFKLKGYTAAFLSVALSAV IMGVVISAIAYLIPEVVPAI 7 hpa1346337_n 13 in 4 490 2 2 -2.33 38,64,96,141,186,227,266,297,326,348,405,436,482 MLIDSLHVSFDSFNFESILP AMALACLFSVFMMRGLLEFV 8 hpa0056227_i 13 out 27 496 8 0 8.14 28,65,92,149,187,211,253,296,341,390,418,444,472 MGHVVLSTPIVTMFIVYSLL VRTGTKEAFETMLKEIESLK 9 hpa1079833_n 12 in 44 519 9 0 -10.04 87,110,161,191,222,267,309,356,410,436,481,504 MLLIVFFKFYFQYSIKKKSF ICYIGYYFTQKANENNKKDL 10 hpa0156334_n 12 in 10 488 9 1 -11.62 38,81,117,154,184,238,268,300,336,379,414,465 MQENVPLSYDYSISKLFLYA MTITAGKKLEREPNYATPMS 11 hpa0935332_n 12 in 5 486 9 0 -10.60 46,68,104,141,167,197,266,300,340,378,422,470 MLKKIFLTNSLGILCSRIFG LLLAFKSWVTHLYLFYYFQG 12 hpa1254328_i 12 in 5 391 9 2 -14.46 36,71,109,131,160,188,229,266,296,318,357,384 MMITKQSYQKFALMRVFVFS GALGLLALFWLRFITIKFKK 13 hpa1006713_n 12 in 2 480 1 0 -1.39 26,76,118,165,206,260,284,320,369,394,435,464 MVVFTKRVALSLFVGILVSA VALLVGVFYLLKKFYGENLK 14 hpa1240476_i 12 in 2 407 9 1 -9.34 29,62,103,125,159,200,246,283,317,339,366,397 MQKTSNTLALGSLTALFFLM LLCYFYILFFALKGYKQEEN 15 hpa1252788_i 12 in 1 459 8 2 -8.41 36,78,114,159,191,213,265,294,335,383,413,436 MLIKKIDLHKDPIRKLFFYY YEIKKGVFTTYKEKNPIALK 16 hpa1247918_i 12 out 11 418 4 0 4.39 24,52,74,123,152,186,215,276,308,330,373,413 MIFSSLFSVVGMAVLFLIAW GTLSNFMSATIAGLFIGLNA 17 hpa0222220_n 12 out 8 552 0 0 -0.67 48,95,131,171,261,306,355,386,457,479,509,545 MENHSHANTHTDTRTDDKST NLVGVVLISTFSYFLVSLIF 18 hpa1241828_i 12 out 7 435 7 1 7.08 40,72,117,151,192,214,259,311,348,370,405,435 MGFFKLKEHNTNIATEFRAG KALNSGIIILCIISVSVFIF 19 hpa0743083_n 12 out 2 454 5 0 5.85 40,76,122,156,209,272,296,324,373,395,425,451 MFLLRHLTSACVFLASKCLP YCVLTLIFVGLVVCGVFYFL 20 hpa0492812_i 12 out 1 416 1 1 1.47 23,45,71,111,133,168,196,242,296,318,342,396 MENSTLYIVIAGLWLAVGFG LESIAQFILHQKSQENEPAK 21 hpa0317245_nf 11 in 31 620 1 0 -1.44 28,118,156,217,276,322,444,484,506,555,605 MLSFIIKRILWAIPTLFGVS VMSFNLVGDGIMDALDPKRT 22 hpa0143597_i 11 in 7 413 9 1 -12.36 50,72,113,152,178,213,260,306,351,378,412 MAQEKAVPRDPKKLNAFDLR VDIFVFVFGSLTALSVFLGL 23 hpa1631263_i 11 in 5 449 4 3 -4.07 51,96,133,164,193,217,249,335,367,404,437 MGLKLKILRLSMNLKKTENA ISGIIGALYLFALDKRAALK 24 hpa1249488_n 11 in 1 443 8 2 -8.18 28,55,92,114,145,171,223,254,288,313,378 MFKKIFPLALVSSLRFLGLF KYNSDHISEEEIIHLAQNFR 25 hpa1027105_i 11 out 10 1020 8 0 8.68 32,367,406,454,487,540,880,904,928,977,1009 MMLASIIEFSLRQRVIVIVG ALTLLLLPPMFMLIAKKIKI 26 hpa0777602_n 11 out 7 443 3 2 3.51 33,66,115,158,187,246,279,311,351,393,438 MVDAFFQIAVLLFSLFLGAR PGVLVVSLSVALGFVVAPLV 27 hpa1002285_i 11 out 7 450 9 2 12.49 38,84,107,162,199,228,257,319,372,407,432 METIDSVVRLLSNLVWGIPM ILLHKVVYSETRWYFSKHSN 28 hpa1388417_n 11 out 7 1035 6 0 6.79 32,366,405,455,491,543,881,915,937,989,1020 MIEKIIDLSVKNKLLTTLVT LFIIPTAYFVIKNAGIKSNQ 29 hpa0524081_n 11 out 6 442 2 2 2.84 56,113,157,187,229,265,306,328,357,398,438 MGKFSKLGFILATLGSSIGL HFSVRFIAPVVILAIFILQF 30 hpa0237297_n 11 out 5 390 1 0 1.70 46,88,114,138,169,191,238,287,324,346,380 MRKKGMFEKIQKEWLSNIQK AIGVVVGVLVNALWIKSKGI 31 hpa0643460_n 11 out 5 1028 2 0 2.72 30,357,389,445,471,532,874,898,920,973,1004 MYKTAINRPITTLMFALAIV RLLAPIDDKIKRFYQNQKTL 32 hpa1153676_n 11 out 4 426 2 1 2.48 42,70,115,173,204,260,295,327,351,386,417 MNPQTATKKPLKSLLAASSG MFSIVIFMVMVIIFPKKTYL 33 hpa0328950_i 11 out 2 381 9 1 11.02 31,68,113,156,178,229,254,289,313,349,371 MRVFVCFLGVFVSNGLARFG VCLVLSFIVLFPIKMQTAIH 34 hpa0811424_n 11 out 2 437 2 0 2.17 33,55,86,131,170,206,263,306,347,376,434 MLENSSIWSNPAFVAIICMC TFLVYNLPLIVFGVVGALLL 35 hpa0812887_n 11 out 2 388 6 0 6.30 56,95,124,161,183,208,239,278,315,344,371 MLFYGINTILYTGTNAILSR RSFIYYKVFSKGIWKRCGKK 36 hpa1229439_i 11 out 2 386 8 0 8.29 31,53,104,150,176,234,268,290,312,350,377 MLRKNILAYYGANFLLIIAQ HFALTLIILFFFLYKAKPFD 37 hpa1251611_i 11 out 1 383 7 2 7.06 23,45,75,119,159,198,246,283,312,346,375 MHAEFFTFALIMLLIVMAPY MAAIFEGVLFTIAIKILNKK 38 hpa1616735_i 10 in 463 412 0 1 -0.65 61,112,146,173,211,272,313,336,369,399 MAEIKKAKNLGEWLDMRLGT LFFVVLPIITIAESKKQGGV 39 hpa1371362_i 10 in 39 420 9 2 -11.42 28,78,124,157,189,221,276,316,374,396 MNKAIASKILITLGFLFLYR MKKIEAQIYMSKYKTLSAVG 40 hpa1308086_n 10 in 3 298 9 3 -19.23 27,56,94,116,141,168,203,239,261,290 MRNTILFGVSMILLANLCFG LILCSGLLIALPALLKELKK 41 hpa0996535_i 10 in 1 389 7 2 -7.22 33,72,120,152,206,242,272,302,332,372 MAHFGDRFGRKNMFMLSILL SLLMAPIYNKSNTQHEVSPT 42 hpa1564524_i 10 out 15 533 1 1 1.83 41,63,101,147,169,202,240,357,396,525 MEIKNIKEFEKASKKLQKDT PVSALLGALLFVALGFIEKY 43 hpa1578971_i 10 out 9 394 0 1 0.84 44,75,105,127,168,228,257,291,313,385 MVLVLLLGRYVISKVKFLRD FVDIINALAIKGFLLLPFFP 44 hpa0522742_n 10 out 8 442 7 2 7.92 58,116,156,185,230,268,313,356,397,437 MGNHFSKLGFVLAALGSAIG YFLLKYITPLIVFSIWLSKI