--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 45 hpa0797794_i 9 in 9 381 2 3 -2.74 30,59,85,119,154,196,286,319,348 MALDKRIWMHFDLLPFVFII NSKPSFGNFGFLAQLVRALG 46 hpa1641584_n 9 in 4 388 5 2 -5.19 26,60,87,125,166,207,316,346,375 MTTDRNLFFCASLLIFLGVL SLLANCIAIGLVLXLARYTK 47 hpa1308986_n 9 in 3 415 5 0 -5.77 46,108,143,183,205,240,262,296,330 MQLSPLQSALLYFSYFIYPE RPDITIIYADKILQSYSLVR 48 hpa0598984_n 9 in 1 348 8 1 -8.08 25,47,71,135,163,214,248,283,330 MKAQYFFWILFLIGFYWMIY FIALLRLYENYFIQNEQKAC 49 hpa0519513_n 9 out 7 360 3 3 3.59 46,104,154,187,221,256,284,306,357 MAILGDFMLYSLLYGYFNIN VRFWIISMLSNLVALLSLKV 50 hpa1236572_nf 9 out 5 441 2 2 2.85 43,75,101,166,206,315,368,390,425 MALDWDFMFHSIPAFFKGLE LCYSLSLYSSYLEKKFQHIR 51 hpa0036556_n 9 out 2 351 1 0 1.58 23,48,85,107,136,171,196,219,261 MKNDAYEIILSWFITPLTAI KIPNFKQKKVKKDTINTKNE 52 hpa1659476_i 9 out 2 312 2 2 2.29 39,61,91,118,151,193,216,268,294 MLFVDNANKIQGFHHARTPR YLMGYAYLNRQVCALEKRAF 53 hpa0561628_i 9 out 1 535 5 0 5.87 26,49,269,318,347,394,416,454,501 MFNIKRNFLITIISFFLIVP RMDRERDALMVGRVGGSMFK 54 hpa1130508_n 8 in 44 745 9 0 -9.70 105,142,176,210,365,397,707,729 MKESFYIEGMTCTACSSGIE LSSVSVVLNSQRLRNFKIKD 55 hpa0727161_i 8 in 3 255 6 3 -6.28 31,61,92,114,164,202,224,252 MDIYALYIAIGLFTGILSGI KALILGVYGLSLLIVLYKLF 56 hpa0161157_n 8 in 1 270 9 2 -12.28 49,83,106,131,153,183,213,262 MIKSLNSYPNGYNKAMGFLK LKILLLYGMIRYLLMHKLEL 57 hpa0186465_i 8 in 1 425 4 0 -4.04 28,53,83,105,138,161,183,417 MRLLLFNQNAFLLACMFVSS FSTSYILSPSLLGDILFRKR 58 hpa0907648_n 8 in 1 527 2 1 -2.78 33,76,111,145,202,377,418,518 MLASIISILRVFVLLFNTPL LSIGFLFIFASSQSVFLYFN 59 hpa1099197_i 8 in 1 389 4 3 -4.59 44,83,106,141,180,211,335,377 MVFLFFRCYFQASLKETFAI GSFFVGMIMMAVFLKKDKSA 60 hpa1558305_i 8 in 1 376 1 2 -1.39 36,135,199,242,273,304,326,363 MNFFKILLMELRAIVSHKGV IASFIGSVFKLSSLKKACEN 61 hpa1340465_n 8 out 243 329 8 3 8.99 26,98,133,176,209,261,292,329 MSAYIIETLIKILILVAVFS WKIMLPLALLNIVLTGIIIL 62 hpa0943117_i 8 out 23 326 0 3 0.16 24,80,121,162,208,255,294,318 MLKTYHIALACVILAVVVLL IATSVLGAPFFLWLLFRTRG 63 hpa0233932_i 8 out 1 277 1 0 1.22 25,50,72,105,184,214,248,270 MEESTAFILALVGLFTGITA ILLLLIYALSILATLHKLIM 64 hpa1326084_i 7 in 16 348 9 0 -10.40 28,140,180,229,288,310,334 MIAYILKRLLLIIPTLLAIM ASLISDLLCVVIDPRIDFEK 65 hpa1574850_i 7 in 8 788 6 0 -6.43 185,229,266,288,447,476,772 MKCSHCQLEFKESELFKEVI SLSMSASSLLVVLNSLRLKR 66 hpa0870442_n 7 in 7 553 7 0 -7.54 35,81,107,131,197,233,281 MLGMGVFKQLIKGLYEWLLH VEVLKKSPQIVAKDFLERLG 67 hpa0737397_i 7 in 6 642 7 1 -7.31 243,301,385,408,470,601,635 MKEITIALVGQPNVGKSSLI FTTVVAYAFSLIAFYATQIL 68 hpa0977520_i 7 in 2 230 8 5 -8.65 55,77,105,132,166,188,220 MALYDRANSRNAYAEDSLLR DFLNVFISILQIIGIFSDRD 69 hpa0129905_n 7 in 1 210 9 7 -10.35 25,54,83,112,141,170,193 MIFLAILFCVFNQIFLRIVC GLVISKTHIHKHGCYRCYTY 70 hpa1421608_i 7 in 1 359 1 3 -1.89 117,162,209,258,288,337,359 MIFYTTIKEPLKNLQYRHAQ SAGFFLYCCYQYIIMPSLIV 71 hpa0846880_i 7 out 13 686 3 0 3.95 98,120,160,324,358,662,684 MQEYHIHNLDCPDCASKLER VFGDVGVTLLALANSMRAMR 72 hpa1403171_i 7 out 8 242 9 5 20.16 39,80,105,154,176,206,230 MEFLSSLLDALSTTHGIVSL IGFALLIECLNIFIEKKMKK 73 hpa0155370_i 7 out 7 265 7 2 7.38 28,57,106,143,165,207,242 MIKQTLIILAPFFIATLLYF KTCKPTLKGSKEVSLWAKKR 74 hpa1582845_n 7 out 6 262 1 3 1.35 44,70,128,154,192,216,247 MARSFKHSQYPKIFKPLYPN TLIKHAGNIFNLLAGKEKKV 75 hpa1014185_i 7 out 5 284 9 2 17.65 38,81,130,158,212,234,270 MNAWNTIYDQFNPIAFSLGS IVSLGILLYATKNSKKIKEN 76 hpa1129798_n 7 out 4 237 9 3 11.16 40,87,109,145,176,203,227 MPINPLYLFPNLFTASSIFL YGIIRWLFLMVKIIFNKNKS 77 hpa0179900_i 7 out 3 255 1 3 1.88 33,55,97,148,170,200,239 MLDFIQELSTPHVRDFFLLF AIMGRFKEEISLAFSAISKI 78 hpa1365401_n 7 out 2 220 6 0 6.85 43,77,99,139,162,198,220 MLITTQLSKRFYATLALSCV TILYLFIGLYYFNRWNKSCK 79 hpa1420695_i 7 out 2 269 4 1 4.39 39,95,124,156,198,227,262 MFLLMAMVISSYQKNQTVFF NGYLGVVFFIFIVLDVGFKH 80 hpa0358326_n 7 out 1 222 0 1 -0.16 46,86,115,137,163,185,214 MAENSFKNVSTQPKVFFLLP CLGALGACFSIGIYLSVFQK 81 hpa0392367_i 7 out 1 414 7 3 7.20 31,91,123,172,200,313,344 MEKGVWNMLDIWIDMIICIF FLHFTHPPLLERLKALDYEI 82 hpa0913806_i 7 out 1 246 0 1 0.52 37,81,103,125,157,189,217 MQMMHNLSFLGMFLAALSMS AMHHQNNTTQHDHKGVHSHE