--- -------------------------------------------------------------------------------- --- --- All proteins with at least 4 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 83 hpa0318249_n 6 in 29 285 9 3 -11.94 35,107,146,168,220,268 MESFREFIQQFKKNKAAVVG VMSFNLVGDGIMDALDPKRT 84 hpa0317245_n 6 in 28 334 9 4 -11.65 28,117,158,216,279,323 MLSFIIKRILWAIPTLFGVS IGANLLVDILYAFIDPRIRL 85 hpa1122276_n 6 in 13 253 9 4 -11.52 37,81,125,169,199,221 MFEDLKPHLQELRKRLMVSV NENNNENNNENNTKENTKSE 86 hpa0260364_i 6 in 12 332 9 3 -11.93 31,155,185,207,267,317 MRILSFKKNKRAVFSLYLFI LSVLVFIGEGVRDAFNANML 87 hpa1517906_n 6 in 8 547 1 0 -1.71 26,343,368,439,474,516 MDKNNNNLRLILAIALSFLF LIINKVLENKKRMHAQNKKE 88 hpa0074750_i 6 in 5 195 9 4 -13.59 20,51,93,121,161,189 MLGLVLLYVGIVLISNGICG IIEGILTAWIPAWLLFIQHW 89 hpa0154717_i 6 in 5 215 6 1 -6.38 25,48,77,128,159,207 MGRFSLKEILMLSLTLLALL YLIVFLSVCTPWVKFIAYRW 90 hpa1135908_i 6 in 4 308 8 3 -8.23 70,110,173,203,253,297 MANNASFYAAASMAYMLGAK FVIAFLGSFFLWKIKFSKLE 91 hpa1628278_i 6 in 4 323 9 3 -9.68 40,158,182,204,264,287 MELFKRTRILSFMRYSNYGV RKIKKAQEKEKMRRLYESGQ 92 hpa0180661_i 6 in 1 242 6 3 -6.19 43,94,116,152,175,230 MVLSLSILKKSFNDFLSTRM ATLLQTLMLTHYFFIFKEKE 93 hpa0371920_i 6 in 1 345 9 0 -10.31 34,71,94,123,286,332 MIKHYLFMAVSQVFFSFFLV FPFIWAFASYLLFRKFILKR 94 hpa1045596_n 6 in 1 202 5 1 -5.41 24,46,100,123,168,192 MNVLIRLCFIFLIGFFGANK VWVCIGLYFLLLQAFFSLTN 95 hpa1471967_n 6 in 1 292 9 3 -11.35 59,122,164,209,231,265 MRELFKSVRGFFRLLRMIFP CDAFDPKEVFKKFLGFFKKE 96 hpa1486895_n 6 in 1 278 4 0 -4.14 33,62,93,143,165,193 MEKRLKFLKFFANSVILDEK SQLANERERERVTTCSCFLT 97 hpa1570781_n 6 in 1 318 8 3 -8.59 31,53,79,249,283,307 MPDSANMIILFFTYDILFAL SPFFIFLALSLWYFKKLNKR 98 hpa0879966_i 6 out 47 226 8 4 8.41 36,95,124,161,188,211 MEHRVFTIANFFSSNHDFIT FVFMILTYVYLAGAVLTDEG 99 hpa1100927_n 6 out 41 733 2 1 2.04 53,93,143,230,271,324 MANERSKLAFKKTFPVFKRF SHAELDPNSNFEALGTIHIN 100 hpa0999610_i 6 out 23 237 4 1 4.02 55,98,125,168,190,227 MSASPNLSLFFESLDLSKER IYWLFCLVLEVIQKRVEKIL 101 hpa1236572_n 6 out 6 217 0 3 -0.43 43,75,101,142,171,204 MALDWDFMFHSIPAFFKGLE ALLPLSVLFVILERFFKKKV 102 hpa0275250_n 6 out 4 240 9 6 12.57 40,82,115,164,192,230 MMFDNTLVNLFDTAPLLTSL ILMGILIMTNSLESLTNFLQ 103 hpa0772277_i 6 out 4 210 9 5 9.07 25,59,85,133,169,200 MFVVFIEGFGLAISLCAAVG AIMGTLSVTLFRDFLALLSK 104 hpa1536797_i 6 out 4 377 1 2 1.33 150,185,229,288,333,371 MKTEKQKFLEMRKDGANSVL ALFWIIFLDAIFSIIFSKLN 105 hpa0427687_n 6 out 3 623 7 0 7.76 249,305,340,383,405,427 MRLLLWWVLVLSLFLNPLRA PSQSLYVESLPEVSLKEGAK 106 hpa0823280_i 6 out 2 245 2 1 2.23 79,123,150,181,205,232 MNFYQKIYTHKVVFSSLFFL GLLGWLLEYVHNTLRRLEHQ 107 hpa1391871_i 6 out 2 228 3 3 3.46 34,63,85,152,177,217 MHEFLKAFKDAFPHTISILL LLIALVLMVLALMLFRKQLE 108 hpa0021155_i 6 out 1 472 9 0 11.95 32,54,89,120,151,177 MMVVVLFCVNGALFLALGLI DFKNPSVVYRPSLDLLKHKK 109 hpa0610345_i 6 out 1 184 0 5 0.68 21,43,76,117,146,177 MLISSSYTLSFIWLFLIFFF DFPLLLFVFFKTLSLVKKRL 110 hpa1282579_n 5 in 107 578 7 1 -7.35 51,103,188,210,297 MAKKKHKISTLKYFLRSLKQ LSTIERCEVIIDMSQHKDNL 111 hpa0224149_n 5 in 13 180 9 1 -11.92 30,56,98,120,173 MVMASVIAYQKAHHSEAILP GLHALLYFLEIWKETAVFLG 112 hpa0902875_n 5 in 4 227 5 4 -5.46 37,109,164,186,217 MVFDRTISVREKKAAKTLGI IAWSCCSLALYLGFLKRPYN 113 hpa0267018_n 5 in 3 349 3 1 -3.01 18,118,291,313,341 MMFIVAVLMLAFLIFVHELG GVGFLVFIMFLGLFNDLTRL 114 hpa1581492_i 5 in 2 458 9 2 -9.14 37,83,157,199,334 MLETSSHFLKSFRLKRYIGF SADDKNITIERESVFIAPSE 115 hpa0200013_i 5 in 1 255 5 4 -5.01 53,97,145,186,226 MQQEEIIEGYYGASKGLKKS KENGIKTMQEAIEADGKFHK 116 hpa0608303_i 5 in 1 678 2 1 -2.15 34,85,112,159,202 MKSLSNALFSLFLKGFYFTF QLESLKALSYYLLYHGANLK 117 hpa0680871_n 5 in 1 224 5 5 -5.53 40,80,149,175,199 MDKMNKVVLHKEYSGFVRFF SIRYESSGADSMINGYGYTK 118 hpa0794733_n 5 in 1 493 1 1 -1.53 30,77,118,144,355 MQSLSWLNLAFRWLFITGLG LQATTIQGDLILFANDAPNY 119 hpa1140089_i 5 out 118 497 8 0 8.42 24,109,131,209,234 MLKILPFLVILAYLGKSGGM PSTLKLATKHVKLEHGRLTE 120 hpa0495927_n 5 out 9 224 6 5 6.45 32,66,104,161,215 MDHEFLITMRLSFSLALITT LISFSLLFVTLFLNKKQSSF 121 hpa1237227_n 5 out 4 223 6 4 6.91 39,72,99,167,209 MGVLLELDNLKRLLEGFETT LCYSLSLYSSYLEKKFQHIR 122 hpa0166660_n 5 out 2 318 9 1 10.07 162,200,230,275,307 MLSRDIVQYSKIRTELYAYL LLISLAIYVKFAYSVLPKRE 123 hpa0605772_i 5 out 2 217 2 1 2.61 18,58,111,149,203 MKILALLIAIIGHEIMHGLS PPLSEFFIHAPTRFLFSLLL 124 hpa1127979_i 5 out 2 314 0 0 0.87 42,75,118,174,285 MRLLFFSNPAIPLSTASFKC TKIGMSHPSMSVKKLDSLKP 125 hpa1227534_i 5 out 2 204 6 4 6.53 56,78,129,157,194 MKIKTNQKRVFMQEALLRFQ FVLIALLIWFLLKRYSRKMG 126 hpa1656596_n 5 out 2 215 9 6 10.19 34,81,103,158,201 MISQMLIQATLETLYMVFVA LVQIIQSVGDYVVKRLRKHK 127 hpa0109704_n 5 out 1 153 5 2 5.08 21,44,92,124,153 MEAFIMLAISVALFFTEFRV FSSKTLFTPSLIALFSVLMS 128 hpa0656881_i 5 out 1 166 9 6 11.93 38,67,106,128,152 MLSPATFKQITLALIASRLI GIILFLLSANRMLLTPKERM 129 hpa1559432_i 5 out 1 261 9 3 17.89 99,129,161,187,251 MGRKVDLPFYYNAEYVLVGK IFLVLGLLIFYFSFKKGKAS 130 hpa1649018_i 5 out 1 147 3 3 3.54 29,56,86,111,136 MLSLKQDSFFFLCLGILGFY FLALFALIESALWGLYEKSS 131 hpa0822128_n 4 in 15 358 9 3 -13.46 51,105,163,203 MAEEEKTELPSAKKIQKARE VFAQVAKLEQERQKQKIIKP 132 hpa1079196_n 4 in 10 179 5 7 -5.26 29,57,110,167 MKVLKLLPNFLTILRIVLSL AIAVFLTLYSGIDYTIKYYK 133 hpa1342045_n 4 in 9 207 9 6 -17.67 55,98,135,185 MSKSLQKKNRKKKLQQTQKA IATGIQKIHGKNHTQFIKES 134 hpa0804358_n 4 in 8 272 0 4 -0.48 30,167,218,261 MGKFMNTLKKHLAFIIPLVA LFSLVVSFVSVLLVAWRTRH 135 hpa1629258_i 4 in 6 525 4 2 -4.19 385,414,475,497 MKLFNARLIVFIGALLLGVG LLPKLTQTKSLYFWFGVNKR 136 hpa0195057_n 4 in 4 177 7 5 -7.34 36,75,124,164 MLEKLIERVLFATRWLLAPL VCSALLAAVTNNIAFSQNKA 137 hpa0597296_i 4 in 4 215 7 3 -7.27 37,131,153,183 MQALKSLLEVITKLQNLGGY FCLMDRSSVGIKTKCSSGCC 138 hpa0292487_n 4 in 3 523 1 0 -1.85 137,243,282,318 MALRVLLFFCFLFLQAEDKS KLLKVDADFLGDGFGNKREQ 139 hpa1105776_i 4 in 2 370 5 0 -5.76 20,57,86,326 MLISIAFLLVLYLLNYSSFR PLRFLAPSEIAYLRLLPKNQ 140 hpa0117113_n 4 in 1 180 6 2 -6.14 31,64,106,134 MLAPTATTSSGLTLLFKSLL TSTTLSPVSKTVTSKVPPPK 141 hpa0212386_i 4 in 1 154 9 7 -10.17 55,84,113,136 MSIGPLQMRLCPSSYKSPML FSLKIALVSSELEGISIKSP 142 hpa0273069_i 4 in 1 220 9 2 -9.07 76,104,152,188 MSAESLIVILWCVSKVSFNP FCVKSMPNFSKLSKLESSFL 143 hpa0297484_n 4 in 1 157 6 5 -6.50 28,79,109,154 MKKFGLGVYLLLLGILGGSL KELFVLVCALFFWRLLGKNV 144 hpa0909241_n 4 in 1 364 6 0 -6.54 29,79,113,164 MEFYKKQTLIIVSFCLSLLI SFKQKLIQTIENYQIPKEIQ 145 hpa0990266_n 4 in 1 326 6 4 -6.81 54,92,215,247 MRARCSKKSSMRKEKIMTNF EMFSTHPSIKNRIQSLRKRV 146 hpa1408590_i 4 in 1 387 5 0 -5.77 32,81,307,329 MGFLFEKSLMSFFAHPIKIL DYYKILTPHEQIGWVKKDEV 147 hpa1627930_i 4 in 1 112 9 1 -11.11 23,46,74,100 MDWGRVVHVLFSLISLTTIA ISNAFSLIFLLIESVVTSET 148 hpa1574413_n 4 out 10 145 7 8 7.94 28,71,113,143 MDAIYPYVLVVHLLCAIIFI HPIALTFGFLIAILAKTMWF 149 hpa1563071_i 4 out 7 449 9 1 9.05 36,89,131,171 MGRNQGAYLDPSESILMLMV VDGARIKRLKAVKQDQGENE 150 hpa0635340_i 4 out 6 593 4 2 4.70 52,90,183,288 MQTPMDTIKSIPLRTFILLY NFETLMKKQGLFYELFLKQQ 151 hpa0554816_n 4 out 3 152 0 4 -0.67 44,68,91,135 MFHTSLATTPLTIPVRVAST FLSLMVFSVSYCLAISGSME 152 hpa1078693_n 4 out 3 168 7 4 7.49 42,78,127,156 VLFIVSSGAKSFQISNLFNN CVALGFLARAFLNFSQVFLK 153 hpa0720190_n 4 out 2 338 2 1 2.62 123,175,215,314 MGDRFVCRTNYLESFFTTKK FLNKVKLRNPPKTEKITEPN 154 hpa1557289_i 4 out 2 148 9 4 9.44 31,80,104,147 MGFLNGYFLWVKAFHVIAVI FNEAPTILMILIVILVVVKP 155 hpa1658883_i 4 out 2 220 2 1 2.04 38,74,157,187 MLFNGLCLFEQASLCFRKAS PEISSDFKGSSRYGVSFSYQ 156 hpa0383775_i 4 out 1 143 9 5 29.55 40,77,100,143 MLEMSLQALNTQDSSVMAQS IKKAKILYFLETILIVVLMG 157 hpa0550220_i 4 out 1 748 9 0 16.52 35,93,162,533 MEDFLYNTLYFIEDYKLVVI AKTRGELSYDKSLVPVGSSE 158 hpa0628313_n 4 out 1 490 4 2 4.28 31,69,129,162 MDKETRFYNLFSLAILGILI NDELVLVSYENNKNILYTLN 159 hpa0741083_i 4 out 1 134 1 4 1.82 24,56,97,123 MSLRFILTFLRLFLIAMLGH WNFPALMAALALSCDWSAKL 160 hpa0857291_i 4 out 1 279 2 4 2.52 42,105,183,248 MRVIIEFMLISLKTFLKILL YNKHEIRSSLSPNGLNLTYK 161 hpa1035329_i 4 out 1 155 1 9 1.76 41,69,92,129 MRVMWLAKIAFLCPGEQFLH LDCESKILDSFKRLILSCIS 162 hpa1301104_n 4 out 1 130 0 3 0.40 23,56,83,121 MNFVFLWAALGGAIGSSLRY ILGLTGVAIGWFLAKNFVGI