--- -------------------------------------------------------------------------------- --- --- All proteins with at least 3 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 3 hpa1615881_i 3 in 40 285 9 0 -13.74 22,111,277 MKEFKILIILIVVVGVIYYG FFAVLSFLAYAWKRKVWSEV 4 hpa0892480_n 3 in 7 425 4 0 -4.00 113,137,250 MNFLEDLFYPLRLLENKRVL PSMNKLEASFKILDFIKDNA 5 hpa1081767_if 3 in 1 213 4 9 -4.69 40,136,211 IDFGDQIPHQNPCFFSRRVF LPGMVTLILSAPSITWLLVT 6 hpa1456007_n 3 in 1 242 5 0 -5.21 27,79,156 MKKIFSQSLLALVVSVNALL KNLDIGFRRVYSWYVNYVFT 7 hpa0632823_i 3 out 6 373 6 1 6.23 105,242,266 MFSKSLEALHHAKRYRKREL TKELANTLLNYSKIQSSFKS 8 hpa0188377_i 3 out 2 112 9 2 9.70 41,77,99 MRCWMYWLENMLCLYRGSLL RRMILLATLFMVEKKALFSC 9 hpa0351659_n 3 out 1 109 9 5 16.98 43,67,89 MLVDKNSADQKMWRIPEKAL KIFLLKDNPNKRFKNNKRDK 10 hpa0731590_i 3 out 1 179 9 1 14.60 124,149,171 MSQGDGVEGNNMDTTKENLN VEGLVILGFQGFLKLCAKWG 11 hpa1017745_i 3 out 1 243 5 3 5.80 63,128,231 MALVKEVLVVLNRLSPFELQ ILHSFNYLVTIENFKNPLQI 12 hpa1232603_n 3 out 1 471 1 0 1.79 69,208,300 MKKASQVLFFGAFLSSSLQG KDFPALYSDRSALYTALVAS 13 hpa1293592_i 3 out 1 159 6 2 6.14 82,105,139 MHSPNLEKEETEIIETLLMR FKNPYHRAWHEEKSKSLLVL