--- -------------------------------------------------------------------------------- --- --- All proteins with at least 3 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 163 hpa0567958_i 3 in 6 114 9 9 -11.79 54,83,106 MKRPISKLKQNFLQFKHSFN SHANFTMKLIILMTQWQNWF 164 hpa1003889_n 3 in 6 127 0 6 -0.56 48,90,112 MASFISKGCVKAAKFFFMLA LCVITPSMRLFLNSKSITSS 165 hpa1364730_n 3 in 4 161 2 1 -2.43 40,62,156 MNVKNRLSDWEYQWAVALVY VILGLVCVFGICSRLCAKLG 166 hpa1597734_n 3 in 4 108 7 6 -7.85 36,82,104 MISKNSSSKRLNPSCSFFLI TLKEELIFLTISSIKLSLSM 167 hpa0325302_n 3 in 3 134 6 6 -6.31 30,52,120 MCQIQCLLILLSINIVSAII GVFVSSLSSALLRFLNNNGK 168 hpa0575158_i 3 in 3 949 9 0 -14.50 47,69,507 MQKGVNPFFKVLFDGGNRLF NHSIIDKYQALRQMYQQIKE 169 hpa0824628_n 3 in 3 119 3 9 -3.89 41,69,104 MSFSHTKFALIAPQSFPPCP LWAGFGVVCLSAWCLGGFNA 170 hpa1531123_n 3 in 3 101 0 2 -0.36 32,62,91 MSKTLATSLITPLANILLKV ATKLPAALPLPGPTGMPISL 171 hpa0016884_n 3 in 1 462 9 0 -10.52 288,340,363 MSVILGISLTGCIGYRMDLE NRHNILYVRSFKNGFVLSRL 172 hpa0224529_i 3 in 1 209 5 6 -5.14 59,124,146 MIKDLGFKVLFCNNAHKPKC KTPPCPGKILPLSLIPTFLF 173 hpa0243849_n 3 in 1 176 3 6 -3.46 30,148,176 MSAMMRYFHIYATTFFFPLA RMFISVLIGFVVFFGAIYWS 174 hpa0274101_i 3 in 1 151 9 7 -11.79 69,109,140 MACFSRYSLMSIRIRFLSLS NSSSFFLFSGILEYSISPAC 175 hpa0409527_n 3 in 1 132 9 4 -11.13 39,74,120 MHRSTHLVVRFFNRNHHACD FFIFIPKSVVIVEQTIHPTQ 176 hpa0798962_i 3 in 1 194 2 2 -2.66 80,124,148 MEVPIEGLEELVDETKKCLI MITSLFKENYLNLDTIKKLT 177 hpa1314345_n 3 in 1 102 7 9 -7.97 31,75,97 MGAFFTPHARVIRSFSFLNT SLFFNKVLAFLSSLFSSLAS 178 hpa1381381_n 3 in 1 377 2 2 -2.83 141,214,356 MRYDYLNPISFERKFMPLSC NTPYKHLNFIDFSLDIQSIL 179 hpa0026081_i 3 out 85 426 0 0 -0.70 179,271,399 MSVTLVNNENNERYEFETIE LEHVKSPQARITRPRQVYVG 180 hpa1333813_n 3 out 69 133 9 9 11.05 33,87,116 MQQATEALNHPYFGVFVLLV TIGFIYALKRNALSWQKLEV 181 hpa0734242_nf 3 out 27 186 1 6 1.77 44,146,170 MTSFTRLIVVFSFLRTALGT FILVDGFNLLTENLVASFKM 182 hpa1399036_n 3 out 17 166 8 5 8.22 52,107,146 MSVSHVALILRKLFYHRQGV AYNSLLRKSDVLSEKFRIMK 183 hpa1516045_n 3 out 12 150 9 8 12.40 26,78,117 MKEMVDYGIIGFLIFLSVIV TKWDIFHHPVDTQSHEIYSK 184 hpa1193314_i 3 out 8 189 9 7 16.53 32,122,163 MLDSIVYFFNKSGFVTTLVL RKVYDLSVYVQMQVDILSSK 185 hpa0078305_i 3 out 7 145 9 1 21.41 67,90,131 MGVFFLIFGVDQAIKYAILE GVGVLLLKQFFFKQKQNKIK 186 hpa0603722_i 3 out 5 148 9 7 16.15 72,104,138 MHLGLAILVAGIGGFVGDQI LLVSFLALVLWYFQYYSKKN 187 hpa1302654_i 3 out 5 100 3 9 3.75 28,61,96 MYLAKALMSSSLNFLACALM NAKTPKAIITFFIVCLLYLS 188 hpa0792424_n 3 out 4 158 0 9 0.26 53,105,153 LDKFSLRACFLTLFFSGYSK VLAGLSALLVIHILGFFNIK 189 hpa0543118_i 3 out 3 146 4 0 4.44 34,67,127 MLFLRTSISISLLSNSPCAI IIKMFLGVISSCKDFSNCKR 190 hpa0690062_n 3 out 3 97 0 0 0.76 31,55,90 MIFSTLINAIAVILSSLITI IVLKFLDLTLIQWLFMLAKN 191 hpa1047054_n 3 out 3 274 9 6 10.24 37,82,111 MDEIKTLLVDFFPQAKHFGI NHIEIPFNKLDIAIKNQDSP 192 hpa0842284_n 3 out 2 371 6 3 6.16 254,318,351 MVLIVAMAIMNGMSKEFEKK SSYYPSKKASTIDALSVLRN 193 hpa1391530_i 3 out 2 115 8 5 8.84 23,60,97 MLMHSILIILVIILTTYFTR PTILYMVLVQSHALEKAFFN 194 hpa0013702_n 3 out 1 93 9 5 18.75 20,56,87 MSAHFLKIVFLVGMCVSSLF VFGIFLFFKAPSLANWFMGI 195 hpa0020572_i 3 out 1 190 4 3 4.67 90,143,176 MKKFLFKQKFCESLPKSFSK VLTGLGVGMLCVSLFTSPKK 196 hpa0116537_n 3 out 1 145 0 3 0.59 43,65,99 MAFWISLASFSFKFVLCSSR LSPCKTIMDTAGWLSSAVEN 197 hpa0285296_n 3 out 1 484 0 0 0.02 278,381,433 MAKITTVIDIGSNSVRLAVF YLAKEMLPKLVKPIPLTIEF 198 hpa0351988_n 3 out 1 140 7 1 7.52 49,92,121 MSYFFKIILGTSVIVGVLLG FGTLEKNAQEYHQRRLFDAD 199 hpa0361361_i 3 out 1 141 5 3 5.30 34,65,112 MTSSSSPVWITPFSCKLCTI LFWPRRLKISATALKPPTSI 200 hpa0403237_n 3 out 1 179 1 4 1.11 52,78,162 MNFKCFLKSSPYFLNNISNL IHLAKSISGMIMERKSNTPI 201 hpa0468851_i 3 out 1 144 0 6 -0.78 50,83,122 MPFSIRSKNANSSTSFEGAP ANKSSLHCSKSLLSRSNFSL 202 hpa0517003_i 3 out 1 319 9 2 11.07 56,78,161 MQAFFQTTYTMTATGFGALN ATCKQLISNHQRPKEVDYIS 203 hpa0564381_n 3 out 1 218 9 6 10.42 120,162,200 MNDTTEHHGPNPLNAPPPSN VIGIKNFINGLFTSKKQGGA 204 hpa1111945_n 3 out 1 110 9 9 10.58 35,64,100 MGFVVFGGGGGFGLTGFFGF DFFFSVVSVTGVVSVALGEL 205 hpa1624904_n 3 out 1 133 8 4 8.50 41,71,94 MKRLGSNLWYSLGFVSKNAF TRIGYIRDFYNNDRIRILFT 206 hpa1664450_n 3 out 1 112 9 9 25.25 38,72,94 VFWSGCYCSFYGSCGWGFLS YFAFNFRRKVAIKTHAGTVT