--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 37 hpa0113336_i 1 in 42 380 1 2 -1.96 86 MRMQTKLIHGGISEDATTGA VGIEHEQDLLEDLEQAFAKI 38 hpa0630843_i 1 in 25 659 7 1 -7.77 27 MLKKIFYGFIVLFLIVMGLL TPNSITPTPKRTDDSEERLL 39 hpa0263344_n 1 in 14 421 8 1 -8.56 418 MGVGYQIGGAQQNIDNKGST NGADVDYRRLYAFYINYTIG 40 hpa0291465_n 1 in 13 343 6 2 -6.84 113 MQEILIPLKEKNYKVFLGEL AFEVASHIPKETIIKVLEKW 41 hpa0102464_i 1 in 9 486 4 2 -4.72 238 MPFVPTRSLKEKKIDFIEAI QEVLKLNEIKSSILLWLESL 42 hpa1003678_i 1 in 7 410 7 2 -7.30 387 MKKEVVVIGGGIVGLSCAYS SQDGANEKNADIMLFSAFFR 43 hpa0371191_i 1 in 6 242 5 3 -5.72 201 MRCFKATIAYDGAYFLGYAK LKATIRTPIMANGLYLHRVY 44 hpa0311023_n 1 in 5 339 9 2 -9.00 227 MRHGDISSSPDTVGVAVVNY EKITRPSVGVAACPVGDLPT 45 hpa0531991_n 1 in 5 403 8 2 -8.57 25 MVFFHKKIILNFIYSLMVAF LEELLKTHSFEKNSFYLLEG 46 hpa1568504_n 1 in 5 316 1 3 -1.32 156 MQEFSLWCDFIERDFLENDF KLLKEGLIAFKQSFEKLLSS 47 hpa1333094_n 1 in 3 205 0 4 -0.99 153 MACGKGHDIMEVASPYGWKK INESAVHAMQDLMPKLIEMA 48 hpa0091561_i 1 in 2 457 4 1 -4.00 384 MRYFLVVFLFLFVGCTKKDF VLGMSDLKDFVNKTSSPLNA 49 hpa0331857_i 1 in 2 745 9 1 -12.00 121 MKKHILSLALGSLLVSTLSA MGAELKYRRLYSVYLNYVFA 50 hpa0408857_i 1 in 2 182 9 5 -32.00 23 MRFKGVVAFISLAVALGVLA NKKERLLADLDYYKIRYHAV 51 hpa1399888_n 1 in 2 285 9 3 -12.91 35 MKISPSPRKLSKVSTSVSFL FPKPEETVHLKIPIAYSLKE 52 hpa0339968_i 1 in 1 254 9 2 -14.75 34 MKLNLQEIQLRTLLKMLVGA DALKVQMRRVFAFYVGYNYH 53 hpa0353597_i 1 in 1 117 5 9 -5.79 47 MFFDGFFLHHRSVFKTLLKF EEFTPYFRPEFSTNFCHKFW 54 hpa0493311_n 1 in 1 216 9 5 -12.00 111 MAMPTMNAPKDIENPKKWLN SDNKSKSLILKKAAKTVPVQ 55 hpa0674195_n 1 in 1 100 4 9 -5.00 88 MVMRPGVLQVGAMYANGVGI AIIWGGCLLTEVGSQKIITK 56 hpa0876279_i 1 in 1 124 8 6 -8.89 106 MGSKFSPLLTSMKCKTPFFK ILALLECKISFCKTLLSEIS 57 hpa1024894_n 1 in 1 106 9 7 -15.67 94 MILGNNVSKSFKRDFNPCKI CCMMLSISLLNSLGLLIKEA 58 hpa1206870_n 1 in 1 85 9 9 -12.00 83 MGRSLALALQKASISRFASV LKPYSAFIALSCTQFHYSAC 59 hpa1386165_n 1 in 1 412 2 2 -2.29 32 MLSFISAFDKRGVSIRLLTA LETLSALNSTYLSLQNLKGL 60 hpa1433295_n 1 in 1 968 1 0 -2.00 143 MAKKKDLTTDNEIFVAQKLA GYRDYWIKKGKLEDFFLKQL 61 hpa1503441_i 1 in 1 892 8 1 -8.00 699 MLLDFSNLNEEPLKNQIKAE ALKDLAKEIQPKVYEYGFLR 62 hpa1447159_i 1 out 40 290 3 3 3.80 147 MDYKCFKGKHANIVIEIISL SECYLASQHEAHILEKYLKG 63 hpa0851020_i 1 out 34 196 9 4 10.04 107 MMGYIPYVIENTDRGERSYD MSAKEAKEYGLIDKVLQKNV 64 hpa0677958_n 1 out 33 384 9 2 22.39 376 MFYDEKKTYQKIEERLDIVR SATAIGIVAHALLSKAIKNK 65 hpa1439432_i 1 out 14 270 2 2 2.96 167 MSKIAKTAIISPKAEINKGV ESSRGVAYKSSEYSSEEKQE 66 hpa0584586_i 1 out 10 255 0 3 0.91 77 MKIGVFDSGVGGFSVLKSLL EFHASGDVVWLEKQAKEWLK 67 hpa0336835_i 1 out 8 79 9 9 18.66 23 MGGFTSIWHWVIVLLVIVLL DAQATQTKVHESSEIKSKQE 68 hpa0536612_n 1 out 8 254 0 4 -0.88 128 MKIGVYGASGRIGKLLLEEL EVALWLKDKAAKKYEINEMF 69 hpa0587466_n 1 out 6 197 9 4 13.73 48 MSDAGMPSLSDPGMSLAAYA VMTQKNAKELYFQRLLEEKN 70 hpa0910912_i 1 out 6 461 5 1 5.56 296 MKKILVIGDLIADYYLWGKS EFEEGYSTSAIIEKIKRTCN 71 hpa0918461_i 1 out 5 360 9 2 14.40 262 MPTILVSALEASSNAHLEEL YLKHGSARKIANEMAFLLNL 72 hpa0685737_i 1 out 4 226 1 3 1.60 117 MEQKICVIGFSGGQDSTTLA DKCPACQLRKKGFEEFQANK 73 hpa1164156_n 1 out 4 336 9 2 9.51 280 MPKTETYPRLLADIGGTNAR KTPGLDGAGIALENYLLHDK 74 hpa1454968_i 1 out 4 284 7 2 7.20 207 MKDSLQTIGVFVRPTHYQNP RDYFKVLKEKLLWGESPSKK 75 hpa0271795_n 1 out 3 252 1 3 1.00 146 MKPYFSLEKLDLYHGDVSVL KIEKEYCELSKKRILESLSL 76 hpa1630832_i 1 out 3 127 9 5 20.86 25 MGQIKDILTTLLPLVVLFLI EEISAKLSGAKTLKQRQITT 77 hpa0242006_n 1 out 2 215 8 3 8.00 144 MKKPYRKISDYAIVGGLSAL FGSSRPTSSPAVSSGTRGFN 78 hpa0684149_i 1 out 2 150 9 5 9.47 37 MHQNNKTFLPSQSAHLSKII GLMPYGPYGYGAPGYFPYAF 79 hpa0779011_i 1 out 2 617 7 1 8.00 86 MVKNTGELKNLNEKYEQLSQ LGTQLQYRRLYSVYLNYVFA 80 hpa0161969_i 1 out 1 273 2 4 2.00 183 MYYAIKFGWIDCPIKNKAFH ASLLKTKDCLLTDEYLKYRF 81 hpa0234976_i 1 out 1 691 0 1 0.00 120 MKKSLLLSLSLIASLSRAED MGAKLEYRRMYSLFLNYVFA 82 hpa0328954_i 1 out 1 103 7 7 7.76 86 MLFTHFFPPNLFTQFKHLYN WGVFGFKLHRSFPHQNANSY 83 hpa0507136_n 1 out 1 250 4 3 4.00 125 MFNNNDFKDYRKLLGFGSQN FNISQNFFDYKITEIPNKPL 84 hpa0566129_i 1 out 1 196 8 4 8.00 131 MSNNMRKLFSMIADSKDKKE DYVRDLLMKFDLEKYMKEKG 85 hpa0585587_n 1 out 1 128 6 7 6.62 50 MRLSAIFLAKTISLFPVPLN RTNSAILMWLFAGKSKVELK 86 hpa0587180_i 1 out 1 109 4 7 4.58 50 MPGSLKLGMPASLITAISLS VMSARLPIGVGKKYSTKSHA 87 hpa0610906_i 1 out 1 347 8 2 8.00 128 MKRQTPPYAFMRNQTLVTQT YNRSHIKHIRFNMAYLKSLL 88 hpa0647797_i 1 out 1 107 1 8 1.04 84 MIDIRVSESDAPPNTIPTLI QIDPRSLRPGSVILKISPIS 89 hpa0998326_i 1 out 1 257 9 4 10.00 100 MSILTASFSSDIREKMNELV LLEGAENQAKKDKNPEIWLK 90 hpa1125378_i 1 out 1 190 7 4 8.00 114 MSFLNILNAENLSYMSSSYQ PERRSLFERSFLFFVSHSWH 91 hpa1211234_n 1 out 1 104 3 7 3.52 83 MADFFNPCCLTSPIAQVVEL FNGDTKPQSIAGFKCWHGLV 92 hpa1225045_n 1 out 1 257 6 3 6.00 181 MEILQFIGYGNMAQAILEGA KKGVRGAFIEACHKSVKKMR 93 hpa1228455_n 1 out 1 324 7 2 7.76 307 MNQEILDVLIVGAGPGGIAT IATALNHGYDVAIEIAKRLH 94 hpa1243381_i 1 out 1 34 0 9 0.00 23 MLSPFLIFHGKLLFRIYPHN FRIYPHNRSYGAFVLQQSFQ 95 hpa1268432_n 1 out 1 104 0 7 0.00 61 MPVPTGIILPNTTFSFKSSK TKSPSINLLSPLSKIRTCLS 96 hpa1273385_n 1 out 1 107 9 7 9.49 54 MPSNTGIAILTPLLQSFAYS FMRLGTPKGFKTISTGSPSA 97 hpa1400936_n 1 out 1 691 0 1 0.00 120 MKKSLLLSLSLIASLSRAED MGAKLEYRRMYSLFLNYVFA 98 hpa1499149_n 1 out 1 117 5 7 5.64 57 MPKSPCMASVGCKNALLLPV SRVFSKLFKERFSDEITSVI 99 hpa1560541_i 1 out 1 329 1 2 1.71 32 MSNSMLDKNKAILTGGGALL IPLEELENFRVGMSVLVTIK 100 hpa1561542_i 1 out 1 510 9 1 20.00 186 MKKTTLFVLGLLFNSFLNAV VSLANLMALSDHIDLFYEFV 101 hpa1598535_n 1 out 1 101 6 7 6.67 95 MRSPLSFTASLNPLPICCNL LAKYPPCTFLISSLVHSKYA 102 hpa1650648_i 1 out 1 197 3 5 3.33 30 MKRSSFTSNSVLNFFVVLSF LDEIKQSQKEKKKFPTFKGG