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Transmembrane helices for helpy (Helicobacter pylori)-- Low Reliability Report

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

37 hpa0113336_i 1 in 42 |ali|phd|phdHtm| 380 1 2 -1.96 86 MRMQTKLIHGGISEDATTGA

38 hpa0630843_i 1 in 25 |ali|phd|phdHtm| 659 7 1 -7.77 27 MLKKIFYGFIVLFLIVMGLL

39 hpa0263344_n 1 in 14 |ali|phd|phdHtm| 421 8 1 -8.56 418 MGVGYQIGGAQQNIDNKGST

40 hpa0291465_n 1 in 13 |ali|phd|phdHtm| 343 6 2 -6.84 113 MQEILIPLKEKNYKVFLGEL

41 hpa0102464_i 1 in 9 |ali|phd|phdHtm| 486 4 2 -4.72 238 MPFVPTRSLKEKKIDFIEAI

42 hpa1003678_i 1 in 7 |ali|phd|phdHtm| 410 7 2 -7.30 387 MKKEVVVIGGGIVGLSCAYS

43 hpa0371191_i 1 in 6 |ali|phd|phdHtm| 242 5 3 -5.72 201 MRCFKATIAYDGAYFLGYAK

44 hpa0311023_n 1 in 5 |ali|phd|phdHtm| 339 9 2 -9.00 227 MRHGDISSSPDTVGVAVVNY

45 hpa0531991_n 1 in 5 |ali|phd|phdHtm| 403 8 2 -8.57 25 MVFFHKKIILNFIYSLMVAF

46 hpa1568504_n 1 in 5 |ali|phd|phdHtm| 316 1 3 -1.32 156 MQEFSLWCDFIERDFLENDF

47 hpa1333094_n 1 in 3 |ali|phd|phdHtm| 205 0 4 -0.99 153 MACGKGHDIMEVASPYGWKK

48 hpa0091561_i 1 in 2 |ali|phd|phdHtm| 457 4 1 -4.00 384 MRYFLVVFLFLFVGCTKKDF

49 hpa0331857_i 1 in 2 |ali|phd|phdHtm| 745 9 1 -12.00 121 MKKHILSLALGSLLVSTLSA

50 hpa0408857_i 1 in 2 |ali|phd|phdHtm| 182 9 5 -32.00 23 MRFKGVVAFISLAVALGVLA

51 hpa1399888_n 1 in 2 |ali|phd|phdHtm| 285 9 3 -12.91 35 MKISPSPRKLSKVSTSVSFL

52 hpa0339968_i 1 in 1 |ali|phd|phdHtm| 254 9 2 -14.75 34 MKLNLQEIQLRTLLKMLVGA

53 hpa0353597_i 1 in 1 |ali|phd|phdHtm| 117 5 9 -5.79 47 MFFDGFFLHHRSVFKTLLKF

54 hpa0493311_n 1 in 1 |ali|phd|phdHtm| 216 9 5 -12.00 111 MAMPTMNAPKDIENPKKWLN

55 hpa0674195_n 1 in 1 |ali|phd|phdHtm| 100 4 9 -5.00 88 MVMRPGVLQVGAMYANGVGI

56 hpa0876279_i 1 in 1 |ali|phd|phdHtm| 124 8 6 -8.89 106 MGSKFSPLLTSMKCKTPFFK

57 hpa1024894_n 1 in 1 |ali|phd|phdHtm| 106 9 7 -15.67 94 MILGNNVSKSFKRDFNPCKI

58 hpa1206870_n 1 in 1 |ali|phd|phdHtm| 85 9 9 -12.00 83 MGRSLALALQKASISRFASV

59 hpa1386165_n 1 in 1 |ali|phd|phdHtm| 412 2 2 -2.29 32 MLSFISAFDKRGVSIRLLTA

60 hpa1433295_n 1 in 1 |ali|phd|phdHtm| 968 1 0 -2.00 143 MAKKKDLTTDNEIFVAQKLA

61 hpa1503441_i 1 in 1 |ali|phd|phdHtm| 892 8 1 -8.00 699 MLLDFSNLNEEPLKNQIKAE

62 hpa1447159_i 1 out 40 |ali|phd|phdHtm| 290 3 3 3.80 147 MDYKCFKGKHANIVIEIISL

63 hpa0851020_i 1 out 34 |ali|phd|phdHtm| 196 9 4 10.04 107 MMGYIPYVIENTDRGERSYD

64 hpa0677958_n 1 out 33 |ali|phd|phdHtm| 384 9 2 22.39 376 MFYDEKKTYQKIEERLDIVR

65 hpa1439432_i 1 out 14 |ali|phd|phdHtm| 270 2 2 2.96 167 MSKIAKTAIISPKAEINKGV

66 hpa0584586_i 1 out 10 |ali|phd|phdHtm| 255 0 3 0.91 77 MKIGVFDSGVGGFSVLKSLL

67 hpa0336835_i 1 out 8 |ali|phd|phdHtm| 79 9 9 18.66 23 MGGFTSIWHWVIVLLVIVLL

68 hpa0536612_n 1 out 8 |ali|phd|phdHtm| 254 0 4 -0.88 128 MKIGVYGASGRIGKLLLEEL

69 hpa0587466_n 1 out 6 |ali|phd|phdHtm| 197 9 4 13.73 48 MSDAGMPSLSDPGMSLAAYA

70 hpa0910912_i 1 out 6 |ali|phd|phdHtm| 461 5 1 5.56 296 MKKILVIGDLIADYYLWGKS

71 hpa0918461_i 1 out 5 |ali|phd|phdHtm| 360 9 2 14.40 262 MPTILVSALEASSNAHLEEL

72 hpa0685737_i 1 out 4 |ali|phd|phdHtm| 226 1 3 1.60 117 MEQKICVIGFSGGQDSTTLA

73 hpa1164156_n 1 out 4 |ali|phd|phdHtm| 336 9 2 9.51 280 MPKTETYPRLLADIGGTNAR

74 hpa1454968_i 1 out 4 |ali|phd|phdHtm| 284 7 2 7.20 207 MKDSLQTIGVFVRPTHYQNP

75 hpa0271795_n 1 out 3 |ali|phd|phdHtm| 252 1 3 1.00 146 MKPYFSLEKLDLYHGDVSVL

76 hpa1630832_i 1 out 3 |ali|phd|phdHtm| 127 9 5 20.86 25 MGQIKDILTTLLPLVVLFLI

77 hpa0242006_n 1 out 2 |ali|phd|phdHtm| 215 8 3 8.00 144 MKKPYRKISDYAIVGGLSAL

78 hpa0684149_i 1 out 2 |ali|phd|phdHtm| 150 9 5 9.47 37 MHQNNKTFLPSQSAHLSKII

79 hpa0779011_i 1 out 2 |ali|phd|phdHtm| 617 7 1 8.00 86 MVKNTGELKNLNEKYEQLSQ

80 hpa0161969_i 1 out 1 |ali|phd|phdHtm| 273 2 4 2.00 183 MYYAIKFGWIDCPIKNKAFH

81 hpa0234976_i 1 out 1 |ali|phd|phdHtm| 691 0 1 0.00 120 MKKSLLLSLSLIASLSRAED

82 hpa0328954_i 1 out 1 |ali|phd|phdHtm| 103 7 7 7.76 86 MLFTHFFPPNLFTQFKHLYN

83 hpa0507136_n 1 out 1 |ali|phd|phdHtm| 250 4 3 4.00 125 MFNNNDFKDYRKLLGFGSQN

84 hpa0566129_i 1 out 1 |ali|phd|phdHtm| 196 8 4 8.00 131 MSNNMRKLFSMIADSKDKKE

85 hpa0585587_n 1 out 1 |ali|phd|phdHtm| 128 6 7 6.62 50 MRLSAIFLAKTISLFPVPLN

86 hpa0587180_i 1 out 1 |ali|phd|phdHtm| 109 4 7 4.58 50 MPGSLKLGMPASLITAISLS

87 hpa0610906_i 1 out 1 |ali|phd|phdHtm| 347 8 2 8.00 128 MKRQTPPYAFMRNQTLVTQT

88 hpa0647797_i 1 out 1 |ali|phd|phdHtm| 107 1 8 1.04 84 MIDIRVSESDAPPNTIPTLI

89 hpa0998326_i 1 out 1 |ali|phd|phdHtm| 257 9 4 10.00 100 MSILTASFSSDIREKMNELV

90 hpa1125378_i 1 out 1 |ali|phd|phdHtm| 190 7 4 8.00 114 MSFLNILNAENLSYMSSSYQ

91 hpa1211234_n 1 out 1 |ali|phd|phdHtm| 104 3 7 3.52 83 MADFFNPCCLTSPIAQVVEL

92 hpa1225045_n 1 out 1 |ali|phd|phdHtm| 257 6 3 6.00 181 MEILQFIGYGNMAQAILEGA

93 hpa1228455_n 1 out 1 |ali|phd|phdHtm| 324 7 2 7.76 307 MNQEILDVLIVGAGPGGIAT

94 hpa1243381_i 1 out 1 |ali|phd|phdHtm| 34 0 9 0.00 23 MLSPFLIFHGKLLFRIYPHN

95 hpa1268432_n 1 out 1 |ali|phd|phdHtm| 104 0 7 0.00 61 MPVPTGIILPNTTFSFKSSK

96 hpa1273385_n 1 out 1 |ali|phd|phdHtm| 107 9 7 9.49 54 MPSNTGIAILTPLLQSFAYS

97 hpa1400936_n 1 out 1 |ali|phd|phdHtm| 691 0 1 0.00 120 MKKSLLLSLSLIASLSRAED

98 hpa1499149_n 1 out 1 |ali|phd|phdHtm| 117 5 7 5.64 57 MPKSPCMASVGCKNALLLPV

99 hpa1560541_i 1 out 1 |ali|phd|phdHtm| 329 1 2 1.71 32 MSNSMLDKNKAILTGGGALL

100 hpa1561542_i 1 out 1 |ali|phd|phdHtm| 510 9 1 20.00 186 MKKTTLFVLGLLFNSFLNAV

101 hpa1598535_n 1 out 1 |ali|phd|phdHtm| 101 6 7 6.67 95 MRSPLSFTASLNPLPICCNL

102 hpa1650648_i 1 out 1 |ali|phd|phdHtm| 197 3 5 3.33 30 MKRSSFTSNSVLNFFVVLSF

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
37	hpa0113336_i	1	in	42	\|ali\|phd\|phdHtm\|	380	1	2	-1.96	86	MRMQTKLIHGGISEDATTGA
38	hpa0630843_i	1	in	25	\|ali\|phd\|phdHtm\|	659	7	1	-7.77	27	MLKKIFYGFIVLFLIVMGLL
39	hpa0263344_n	1	in	14	\|ali\|phd\|phdHtm\|	421	8	1	-8.56	418	MGVGYQIGGAQQNIDNKGST
40	hpa0291465_n	1	in	13	\|ali\|phd\|phdHtm\|	343	6	2	-6.84	113	MQEILIPLKEKNYKVFLGEL
41	hpa0102464_i	1	in	9	\|ali\|phd\|phdHtm\|	486	4	2	-4.72	238	MPFVPTRSLKEKKIDFIEAI
42	hpa1003678_i	1	in	7	\|ali\|phd\|phdHtm\|	410	7	2	-7.30	387	MKKEVVVIGGGIVGLSCAYS
43	hpa0371191_i	1	in	6	\|ali\|phd\|phdHtm\|	242	5	3	-5.72	201	MRCFKATIAYDGAYFLGYAK
44	hpa0311023_n	1	in	5	\|ali\|phd\|phdHtm\|	339	9	2	-9.00	227	MRHGDISSSPDTVGVAVVNY
45	hpa0531991_n	1	in	5	\|ali\|phd\|phdHtm\|	403	8	2	-8.57	25	MVFFHKKIILNFIYSLMVAF
46	hpa1568504_n	1	in	5	\|ali\|phd\|phdHtm\|	316	1	3	-1.32	156	MQEFSLWCDFIERDFLENDF
47	hpa1333094_n	1	in	3	\|ali\|phd\|phdHtm\|	205	0	4	-0.99	153	MACGKGHDIMEVASPYGWKK
48	hpa0091561_i	1	in	2	\|ali\|phd\|phdHtm\|	457	4	1	-4.00	384	MRYFLVVFLFLFVGCTKKDF
49	hpa0331857_i	1	in	2	\|ali\|phd\|phdHtm\|	745	9	1	-12.00	121	MKKHILSLALGSLLVSTLSA
50	hpa0408857_i	1	in	2	\|ali\|phd\|phdHtm\|	182	9	5	-32.00	23	MRFKGVVAFISLAVALGVLA
51	hpa1399888_n	1	in	2	\|ali\|phd\|phdHtm\|	285	9	3	-12.91	35	MKISPSPRKLSKVSTSVSFL
52	hpa0339968_i	1	in	1	\|ali\|phd\|phdHtm\|	254	9	2	-14.75	34	MKLNLQEIQLRTLLKMLVGA
53	hpa0353597_i	1	in	1	\|ali\|phd\|phdHtm\|	117	5	9	-5.79	47	MFFDGFFLHHRSVFKTLLKF
54	hpa0493311_n	1	in	1	\|ali\|phd\|phdHtm\|	216	9	5	-12.00	111	MAMPTMNAPKDIENPKKWLN
55	hpa0674195_n	1	in	1	\|ali\|phd\|phdHtm\|	100	4	9	-5.00	88	MVMRPGVLQVGAMYANGVGI
56	hpa0876279_i	1	in	1	\|ali\|phd\|phdHtm\|	124	8	6	-8.89	106	MGSKFSPLLTSMKCKTPFFK
57	hpa1024894_n	1	in	1	\|ali\|phd\|phdHtm\|	106	9	7	-15.67	94	MILGNNVSKSFKRDFNPCKI
58	hpa1206870_n	1	in	1	\|ali\|phd\|phdHtm\|	85	9	9	-12.00	83	MGRSLALALQKASISRFASV
59	hpa1386165_n	1	in	1	\|ali\|phd\|phdHtm\|	412	2	2	-2.29	32	MLSFISAFDKRGVSIRLLTA
60	hpa1433295_n	1	in	1	\|ali\|phd\|phdHtm\|	968	1	0	-2.00	143	MAKKKDLTTDNEIFVAQKLA
61	hpa1503441_i	1	in	1	\|ali\|phd\|phdHtm\|	892	8	1	-8.00	699	MLLDFSNLNEEPLKNQIKAE
62	hpa1447159_i	1	out	40	\|ali\|phd\|phdHtm\|	290	3	3	3.80	147	MDYKCFKGKHANIVIEIISL
63	hpa0851020_i	1	out	34	\|ali\|phd\|phdHtm\|	196	9	4	10.04	107	MMGYIPYVIENTDRGERSYD
64	hpa0677958_n	1	out	33	\|ali\|phd\|phdHtm\|	384	9	2	22.39	376	MFYDEKKTYQKIEERLDIVR
65	hpa1439432_i	1	out	14	\|ali\|phd\|phdHtm\|	270	2	2	2.96	167	MSKIAKTAIISPKAEINKGV
66	hpa0584586_i	1	out	10	\|ali\|phd\|phdHtm\|	255	0	3	0.91	77	MKIGVFDSGVGGFSVLKSLL
67	hpa0336835_i	1	out	8	\|ali\|phd\|phdHtm\|	79	9	9	18.66	23	MGGFTSIWHWVIVLLVIVLL
68	hpa0536612_n	1	out	8	\|ali\|phd\|phdHtm\|	254	0	4	-0.88	128	MKIGVYGASGRIGKLLLEEL
69	hpa0587466_n	1	out	6	\|ali\|phd\|phdHtm\|	197	9	4	13.73	48	MSDAGMPSLSDPGMSLAAYA
70	hpa0910912_i	1	out	6	\|ali\|phd\|phdHtm\|	461	5	1	5.56	296	MKKILVIGDLIADYYLWGKS
71	hpa0918461_i	1	out	5	\|ali\|phd\|phdHtm\|	360	9	2	14.40	262	MPTILVSALEASSNAHLEEL
72	hpa0685737_i	1	out	4	\|ali\|phd\|phdHtm\|	226	1	3	1.60	117	MEQKICVIGFSGGQDSTTLA
73	hpa1164156_n	1	out	4	\|ali\|phd\|phdHtm\|	336	9	2	9.51	280	MPKTETYPRLLADIGGTNAR
74	hpa1454968_i	1	out	4	\|ali\|phd\|phdHtm\|	284	7	2	7.20	207	MKDSLQTIGVFVRPTHYQNP
75	hpa0271795_n	1	out	3	\|ali\|phd\|phdHtm\|	252	1	3	1.00	146	MKPYFSLEKLDLYHGDVSVL
76	hpa1630832_i	1	out	3	\|ali\|phd\|phdHtm\|	127	9	5	20.86	25	MGQIKDILTTLLPLVVLFLI
77	hpa0242006_n	1	out	2	\|ali\|phd\|phdHtm\|	215	8	3	8.00	144	MKKPYRKISDYAIVGGLSAL
78	hpa0684149_i	1	out	2	\|ali\|phd\|phdHtm\|	150	9	5	9.47	37	MHQNNKTFLPSQSAHLSKII
79	hpa0779011_i	1	out	2	\|ali\|phd\|phdHtm\|	617	7	1	8.00	86	MVKNTGELKNLNEKYEQLSQ
80	hpa0161969_i	1	out	1	\|ali\|phd\|phdHtm\|	273	2	4	2.00	183	MYYAIKFGWIDCPIKNKAFH
81	hpa0234976_i	1	out	1	\|ali\|phd\|phdHtm\|	691	0	1	0.00	120	MKKSLLLSLSLIASLSRAED
82	hpa0328954_i	1	out	1	\|ali\|phd\|phdHtm\|	103	7	7	7.76	86	MLFTHFFPPNLFTQFKHLYN
83	hpa0507136_n	1	out	1	\|ali\|phd\|phdHtm\|	250	4	3	4.00	125	MFNNNDFKDYRKLLGFGSQN
84	hpa0566129_i	1	out	1	\|ali\|phd\|phdHtm\|	196	8	4	8.00	131	MSNNMRKLFSMIADSKDKKE
85	hpa0585587_n	1	out	1	\|ali\|phd\|phdHtm\|	128	6	7	6.62	50	MRLSAIFLAKTISLFPVPLN
86	hpa0587180_i	1	out	1	\|ali\|phd\|phdHtm\|	109	4	7	4.58	50	MPGSLKLGMPASLITAISLS
87	hpa0610906_i	1	out	1	\|ali\|phd\|phdHtm\|	347	8	2	8.00	128	MKRQTPPYAFMRNQTLVTQT
88	hpa0647797_i	1	out	1	\|ali\|phd\|phdHtm\|	107	1	8	1.04	84	MIDIRVSESDAPPNTIPTLI
89	hpa0998326_i	1	out	1	\|ali\|phd\|phdHtm\|	257	9	4	10.00	100	MSILTASFSSDIREKMNELV
90	hpa1125378_i	1	out	1	\|ali\|phd\|phdHtm\|	190	7	4	8.00	114	MSFLNILNAENLSYMSSSYQ
91	hpa1211234_n	1	out	1	\|ali\|phd\|phdHtm\|	104	3	7	3.52	83	MADFFNPCCLTSPIAQVVEL
92	hpa1225045_n	1	out	1	\|ali\|phd\|phdHtm\|	257	6	3	6.00	181	MEILQFIGYGNMAQAILEGA
93	hpa1228455_n	1	out	1	\|ali\|phd\|phdHtm\|	324	7	2	7.76	307	MNQEILDVLIVGAGPGGIAT
94	hpa1243381_i	1	out	1	\|ali\|phd\|phdHtm\|	34	0	9	0.00	23	MLSPFLIFHGKLLFRIYPHN
95	hpa1268432_n	1	out	1	\|ali\|phd\|phdHtm\|	104	0	7	0.00	61	MPVPTGIILPNTTFSFKSSK
96	hpa1273385_n	1	out	1	\|ali\|phd\|phdHtm\|	107	9	7	9.49	54	MPSNTGIAILTPLLQSFAYS
97	hpa1400936_n	1	out	1	\|ali\|phd\|phdHtm\|	691	0	1	0.00	120	MKKSLLLSLSLIASLSRAED
98	hpa1499149_n	1	out	1	\|ali\|phd\|phdHtm\|	117	5	7	5.64	57	MPKSPCMASVGCKNALLLPV
99	hpa1560541_i	1	out	1	\|ali\|phd\|phdHtm\|	329	1	2	1.71	32	MSNSMLDKNKAILTGGGALL
100	hpa1561542_i	1	out	1	\|ali\|phd\|phdHtm\|	510	9	1	20.00	186	MKKTTLFVLGLLFNSFLNAV
101	hpa1598535_n	1	out	1	\|ali\|phd\|phdHtm\|	101	6	7	6.67	95	MRSPLSFTASLNPLPICCNL
102	hpa1650648_i	1	out	1	\|ali\|phd\|phdHtm\|	197	3	5	3.33	30	MKRSSFTSNSVLNFFVVLSF

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