--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Helicobacter pylori --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 279 hpa1107083_n 1 in 30 662 2 1 -2.48 167 MQLDEDLEFAKKIFNPNRAF LSTLEDVNVVKEIMSIAQME 280 hpa1200642_i 1 in 28 264 0 4 -0.84 153 MMSEIIAVANQKGGVGKTTT YDIKSNGSIAYQKLAQSILQ 281 hpa0104260_n 1 in 18 630 3 2 -4.00 279 MQDSLHFKVNEVQGVLENTY ISQEIDKVSNDILEDVNKKQ 282 hpa0606479_i 1 in 13 290 3 4 -3.56 30 MKFLRSVYAFCSSWVGTIVI ERMFKSVGGLEKIIKKENAT 283 hpa1662388_n 1 in 12 340 5 3 -5.00 99 MILSIESSCDDSSLALTRIE KRFVPLEKANISPRTLLKSF 284 hpa0057744_i 1 in 7 1185 5 1 -5.24 658 MQKIIDDSLELAKKLQDSIS GNLGSRVLRQPTCHKSCCAE 285 hpa0846896_n 1 in 7 107 9 9 -13.03 53 MELAKAKSVTPTSPKTASHK SALARVGASLMPSPTKIAGA 286 hpa1622891_i 1 in 6 308 4 4 -4.97 48 MPQNQLVITIIDESGSKQLK WVLEDIVQLQEHVDKDALIS 287 hpa1238665_n 1 in 5 287 7 4 -7.64 33 MILISKKGVFMKTNGLFKMW YQETLAPVYGDEIKPEEIIF 288 hpa0160534_n 1 in 3 196 9 6 -11.00 28 MKEKNFWPLGIMSVLILGLG FVFKNKEELILEQLAFFKQR 289 hpa1587307_n 1 in 3 386 4 3 -5.00 106 MAKETLEITPDLLKNPYQKI SLNEKDFEKIALVLEEILNK 290 hpa0863920_i 1 in 2 183 2 7 -2.29 39 MAEEQENTAQQPPKKSKALL LNSFLIDGFIKNVFFTDFII 291 hpa0037738_n 1 in 1 245 4 6 -4.07 75 MKEKPFNSEQLIYLEELLNH KNPTGFKITRYSITEITNRG 292 hpa0089960_i 1 in 1 62 3 9 -3.16 37 MQKEQEAQEIAKKAVKIVFF ASAQMSHQIKKIEERLNQEQ 293 hpa0257084_n 1 in 1 362 9 3 -13.44 62 MPIDLNEHLKKKNSQRETPT PNIWIDTKSKVKSSIAETKE 294 hpa0281608_n 1 in 1 180 9 8 -11.81 39 MKSMRFSYIEPRAKYLISKL FNFVSTNFSNSLLIKNPESI 295 hpa0287736_n 1 in 1 338 9 3 -9.33 54 MRFKHLKGKRMTYKERLIHE PESYFWFHRRFKSTHPEIYQ 296 hpa0352764_n 1 in 1 111 9 9 -17.71 83 MENDVKEDLEQARPKLEPEK AKADKPKNSLSMLKNFYLPI 297 hpa0367906_i 1 in 1 511 9 2 -9.00 26 MKKLLYTILALLLIGLLTIY DHLLKDDKLKEKLEKGLKGL 298 hpa0436656_i 1 in 1 108 9 9 -13.50 88 MWKCSNKSFSSKRRIASKTS PSSIISLSLKPFTVIGALGL 299 hpa0546325_i 1 in 1 285 6 4 -6.29 39 MAQIVKGSDMFKDFYRTTLS RAKKFLQKSAEFGYEKAMEA 300 hpa0561833_n 1 in 1 125 6 9 -6.49 88 MFCIATEGVMVKLNANNAKT GALLPTLEKTALTAGKIELT 301 hpa0574350_i 1 in 1 268 4 4 -4.00 165 MKQSLREQKLLKILENDVLT QNIDEVTNKMLDQKNQNXSN 302 hpa0616197_i 1 in 1 977 9 1 -29.67 30 MNKRKHVSKKVFNVIILFVA IFTPIDIIVDEVKKNIDSKR 303 hpa0630994_n 1 in 1 119 9 9 -12.00 109 MLRMKYEYTGALTTPPVAPL VLTSFCWLVMLSMSMGLSMV 304 hpa0661365_i 1 in 1 105 4 9 -4.95 70 MASMQRKVKSSKSFKLGKTS TKLWSSLTLHSFRSRLGSLA 305 hpa0748266_i 1 in 1 101 9 9 -10.00 93 MQPIFKAFIIRSCLTASDHV NILVIDAWVIFPIILYHVFD 306 hpa0831115_i 1 in 1 217 5 5 -5.78 63 MLPFDVFIKSYPTPCYFKQF LGLKAFYRELLFKRIQKPKR 307 hpa0939378_i 1 in 1 102 3 9 -3.67 90 MQMSRIGGKRSFIPSHFNRA GVTRFILRFILITAFWRGDN 308 hpa1039149_n 1 in 1 487 7 2 -7.38 31 MIEWMQNHRKYLVVTIWIST FFDKALIEELKKRYKIVKYI 309 hpa1048091_i 1 in 1 107 4 9 -4.00 97 MGRWFLGAIVIKIILGFCGK FFFCFTAKRMALMPCVSLAL 310 hpa1213640_n 1 in 1 154 9 8 -10.18 41 MMRLISDTSKPLPKAILFLR NTSKSGIFSPLPIKRKGKPN 311 hpa1248204_n 1 in 1 101 9 9 -30.00 91 MPMISPAIPAWLQGMPNIKA MALTCFSIETSAWLEMVSFC 312 hpa1271768_n 1 in 1 207 0 6 -0.91 165 MFLGNPHSSILRLGPTTITL LIASPPICATKPLSSYLREI 313 hpa1325497_i 1 in 1 192 9 6 -10.67 33 MKTEMKSSLKLFMRPLLVVL EIEFSHETKGYVFLKLLKKA 314 hpa1407881_i 1 in 1 240 9 4 -15.71 32 MKSNKKSNRLRAIYRALVIA LQERMQKEYLKHYHELNPSE 315 hpa1436254_i 1 in 1 248 8 4 -8.00 23 MRFYFKFLWLLGIFLIFYFL KNAFLSGAKLLRHVFLSDVK 316 hpa1485782_n 1 in 1 367 7 3 -8.00 137 MDTQNLPDQIIPIFMSFDKN TIRNYLGFRVKNILKKVFKL 317 hpa1496099_i 1 in 1 180 2 7 -2.48 159 MLGFNLSHAIDESEPNKLVG SFFMDFYTMCMKMRSFSSVI 318 hpa1637999_i 1 in 1 615 3 2 -3.54 44 MDNRNIDPYFNPEQFLETQK NYLSPSIAIQNALEKNRFKI 319 hpa0403017_i 1 out 42 311 9 4 9.22 77 MAEKTANDLKLSEIELVDFR LVKFDAEKFTEEISKILDKN 320 hpa0206915_n 1 out 18 331 3 3 3.88 128 MEFYASLKSIAMHVPSERVK LLDAFGGGLTWGSALVYFGG 321 hpa1399533_n 1 out 13 129 2 9 2.56 33 MKSIRRGDGLNVVPFIDIML SIMDILKEHNHENFSISTQA 322 hpa1145032_n 1 out 9 235 2 5 2.88 160 MRLDYALFSQHLVNSREKAK QESLVKGKNGNVEFFIHFKR 323 hpa0157813_n 1 out 8 232 3 5 3.48 29 MFSFLEKNPFFFTLAFIFVF ALIAYLNSLGNSRINANQNA 324 hpa0938415_n 1 out 8 1290 3 1 3.03 53 MEIQQTHRKINRPLVSLALV LHNLISNIGHFASNLGMRYS 325 hpa1567157_n 1 out 8 447 5 3 5.36 277 MKLKKTLTYQNHTYSFLSDN KTIFFSDQEVVKSYYQHLKQ 326 hpa1621944_i 1 out 8 303 1 4 1.35 39 MVTDSKGSRYINVHILFRQI TIINRLMQKQDQRLSSLKAQ 327 hpa0425155_n 1 out 7 32 7 9 7.14 25 MDSLEWGLLIFLILVFLVGI LILVFLVGIGYYIFMVFFSK 328 hpa0165256_n 1 out 4 91 6 9 6.97 41 MASGLFENDGIKDNKARDFF QSKNVRLQKRLFELKELRPR 329 hpa1044552_n 1 unk 4 100 0 9 0.00 20 MMFTVAVLMLAFLIFVHELG HQANDSYVQKNPFQKLWILF 330 hpa1516526_n 1 out 4 127 9 9 11.80 22 MNVVPFIDIMLVLLVIVLTT LQTNNLKQLYILVEDKKNQK 331 hpa0033813_i 1 out 3 144 9 9 12.04 73 MSFATLWASLYSLMSKRSKC FLDPTSSNNSIALSGKNLSC 332 hpa0495165_n 1 out 3 246 1 5 1.33 29 MKNTFKAFAFLIVFFSSALL KDFLFSPKARAIFKEYGYIV 333 hpa1192860_i 1 out 3 133 9 8 10.22 36 MNYDNYWDEDKPELNITPLV IYLLKTIKEAGFLKVSLITS 334 hpa0191941_i 1 out 2 130 2 9 2.88 85 MLNASFSCFLTLSATLSSLS PFKNGYKCFAQELPRSFANT 335 hpa0698827_n 1 out 2 106 9 9 11.48 64 MVFITNQLNFIQNILEKHFF VFIQEDDKLFSMLVFFSRMI 336 hpa1129554_n 1 out 2 84 6 9 6.72 71 VLAYKQIFDKGLKPYYKHSV GFKIVFIPILEAKLKRVSNA 337 hpa1666032_i 1 out 2 253 9 4 11.50 231 MAYKYDRDLEFLKQLESSDL TLRLKTQQANGDKKSLQIES 338 hpa1667060_i 1 out 2 174 9 6 14.75 160 MNFFRDEGVLYKEILCDACD ACILVATLRLKAQANEIKNI 339 hpa0075791_n 1 out 1 125 0 9 0.70 102 MMSEHFSVINWLWGRDRSVR LPSSSDNFTHTTHSLRVRAG 340 hpa0158519_n 1 out 1 73 9 9 13.64 29 MMDLESLRGFAYAFFTILFT LEDELIEPRHKKVHDNGIKE 341 hpa0159630_n 1 out 1 68 5 9 5.96 27 MKFLNGLAGNLLIVVILLCV LETKNTQNRANYELVNQGSK 342 hpa0159937_n 1 out 1 194 9 7 13.00 186 MRILWLVIAFVCCLGADDYV IYILLLTLLGAFLGLYFFKK 343 hpa0173234_i 1 out 1 160 3 9 3.05 139 MITLFSFGAFAYYFVSSQIS SLLPLRELRSQVKPSLKGIK 344 hpa0192011_n 1 out 1 267 4 5 4.00 43 MSEKERLNEVILEEENNGSG ALMHADEVSKKMTKPVVIEA 345 hpa0316464_i 1 out 1 144 9 8 10.33 78 MFAQTRSFQISPPLIHFNFH QRKPTRQQPSTFVHHDIRDF 346 hpa0359572_n 1 out 1 389 0 3 0.00 292 MLKLKPDMKLSPTQILGIKN EIAMLFKLLIKDEISSDGAK 347 hpa0373607_i 1 out 1 341 8 3 8.00 198 MEVSRKKIYNPNSTESVNER SNFFEARVSNYAKGSVSFDD 348 hpa0487913_i 1 unk 1 255 0 4 0.00 18 MEIILLIIAAVVLFYFYNTL FISLKKIAIASQLLENDLKD 349 hpa0488690_i 1 out 1 115 9 9 20.57 53 MRIIIRLLSFKMNAFLKLAL AKKERESRQKQDLKEQMKKY 350 hpa0547310_n 1 out 1 121 7 9 7.39 75 MYGGNAMADTINTTEATHET TQKSQATSVTNEPTEAKETK 351 hpa0563240_i 1 out 1 252 3 5 3.49 57 MLGKKNEEVLIDENLVGGVI TVSEILRKIREVESKNKALN 352 hpa0567145_i 1 out 1 126 1 9 1.11 65 MLPTKTRIRDPNKQELTQPK GFGSNKSDKTTNKMSVSQVR 353 hpa0571583_i 1 out 1 304 0 4 0.00 183 MSAMLKGANGVINGVNGMTG QLKLERETTARNIASSKVIV 354 hpa0588768_n 1 out 1 321 0 3 0.00 170 MEQNKKSLENLDLSDVQNIS LYEPNKGLTLINEAQYKELQ 355 hpa0613023_i 1 out 1 324 0 3 0.00 43 MPENSKLQPAKLGKNFDPVD YPRPKTKTLIRIRVRYYLGG 356 hpa0618229_n 1 out 1 110 9 9 13.79 67 MRSCLFLKTNSVLSILMGDK LFITEVLIFNSMVFKSVSPC 357 hpa0619045_n 1 out 1 329 1 4 1.71 40 MTTKRVNTATNKIMTLNTFL HAFSATYKEHLKNINLSNNH 358 hpa0682391_i 1 out 1 118 9 9 14.12 102 MISSFLKVSLNTLFNGALME AVFLIKPRVSAYKDEFLSKK 359 hpa0751100_n 1 out 1 337 9 4 16.00 24 MSWMVVIGALICMLLGVFIF FNALLESLSVNFFQSYKISH 360 hpa0762219_n 1 out 1 114 0 9 0.24 63 MNIKTHSSNEKERFVRIEED LEKERFKYYIENSENIGDIA 361 hpa0821629_n 1 out 1 168 1 8 1.46 77 MPLKSYSSLLEYQYTRLLKL NLNTLKDYELAVQILKKRAN 362 hpa0869157_n 1 out 1 257 0 5 0.95 39 MAKKNKPTECPAGEKWAVPY NDLSKIHSILDNEFNPHKQQ 363 hpa0904772_n 1 out 1 114 9 9 16.57 107 MIEAPLGLGTNSMILLAYAS ILPKAFLTSALSIFLLKLKS 364 hpa0924254_i 1 out 1 71 9 9 26.97 63 MREFFKKLGTEYASKLFLVY LGQTIGAVIFFKLDKLIFSK 365 hpa0952931_i 1 out 1 41 4 9 5.00 25 MMKAVFINVWYLLLTIILLI IIWRIIRLVLKNKDDSNDKV 366 hpa1124551_n 1 out 1 93 2 9 2.03 35 MLYASKTSLFLQIKGKFMLR KDAIYSGAVAYCSETCLKDK 367 hpa1192587_i 1 out 1 84 5 9 5.00 24 MSKSAIFVVSGFLAFLLYAL EKIAEKAEEKKDEKVVEKNA 368 hpa1199222_i 1 out 1 144 9 9 20.00 27 MNISVNPYLMAVVFVVFVLL QAQMPVFEDELNKRVAMGLG 369 hpa1267255_nf 1 out 1 133 0 9 -0.29 78 MHFANLMAHACIEXNPFRSG RSHFYRHLIGSPTHSSAAHF 370 hpa1313415_i 1 out 1 29 0 9 0.00 23 MGSWSRILLSILVVVLGLAL LSILVVVLGLALTAMLINWH 371 hpa1331965_n 1 out 1 201 9 5 12.00 82 MDIKACYQNAKALLEGHFLL KPSSCPLCATSVAIKPGSRG 372 hpa1372002_n 1 out 1 100 7 9 7.62 49 MSIKILITPVLTKLNVPEIA LMLLKPTETLTAWIRVIKMV 373 hpa1445793_n 1 out 1 77 3 9 3.29 57 VRGAKWGIWIVFMDYRLFHM SNAYKTLIASNKKPVLSHLE 374 hpa1454067_n 1 out 1 150 0 9 -0.77 66 MIPLSMPSLSRTFSMSKRSH RVNFSSSAPKRGLNALFSFW 375 hpa1564624_n 1 out 1 107 9 9 14.74 41 MERLITSSLYTFLSDFFSFF KKPTPNTAPTTICVELTGKP 376 hpa1661400_n 1 out 1 307 0 3 0.00 176 MAKKKIAISCGDIQGVGLEL DIAYQNKANNKSYLNAIKYL