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Transmembrane helices for haein (Haemophilus influenzae)-- Low Reliability Report

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

19 HI1231 1 in 83 |ali|phd|phdHtm| 478 1 1 -1.76 196 MSKEIKTQVVVLGAGPAGYS

20 HI0905 1 in 70 |ali|phd|phdHtm| 283 5 2 -5.76 204 MKQYLELCRRIVSEGEWVAN

21 HI1645 1 in 58 |ali|phd|phdHtm| 333 1 2 -1.88 175 MKTLSEFIVERQAEYPNAKG

22 HI0086 1 in 47 |ali|phd|phdHtm| 381 4 2 -4.12 102 MRSIFSLFLEDVMTQQYAID

23 HI1428 1 in 23 |ali|phd|phdHtm| 212 0 3 -0.64 99 MKKIAVLISGQGTNLQTIID

24 HI0440 1 in 22 |ali|phd|phdHtm| 864 9 0 -12.38 28 MRIAKLILNTLLTLCILGLV

25 HI1356 1 in 16 |ali|phd|phdHtm| 699 5 1 -5.40 81 MVSMQISDSLKQKAEKCGIA

26 HI0208 1 in 13 |ali|phd|phdHtm| 362 6 2 -6.20 124 MLCVNVELQERRYPILIGSG

27 HI0087 1 in 12 |ali|phd|phdHtm| 425 3 2 -3.32 226 MNLYNIKHPEEQVTFSQAVR

28 HI0037 1 in 11 |ali|phd|phdHtm| 378 3 2 -3.83 36 MQFFVCLTKSFSTFCQTKLT

29 HI0122 1 in 11 |ali|phd|phdHtm| 396 1 2 -1.80 99 MQTKYDLSTMFIHSGRQKRF

30 HI0915 1 in 11 |ali|phd|phdHtm| 341 1 2 -1.96 268 MQKSYSLQELATQIGATVRG

31 HI0021 1 in 7 |ali|phd|phdHtm| 416 2 1 -2.04 244 MGGVKKNALLDYVFTKALEN

32 HI0629 1 in 6 |ali|phd|phdHtm| 195 9 5 -12.88 117 MQKEQLSAYMDGEQVETDLI

33 HI1695 1 in 6 |ali|phd|phdHtm| 267 0 3 -0.92 252 MKFSVLMSLYIKENPQFLRE

34 HI0194 1 in 5 |ali|phd|phdHtm| 452 8 1 -8.30 77 MYPWQDFAIQPDFSDKIALR

35 HI0220_1 1 in 5 |ali|phd|phdHtm| 302 3 3 -3.04 151 MMNFTLLTYLADCQPKVRSE

36 HI1558 1 in 4 |ali|phd|phdHtm| 267 4 4 -4.88 118 MKYYRRALYDKFVHFYLVIS

37 HI1658 1 in 4 |ali|phd|phdHtm| 193 5 3 -5.63 31 MTLSPLKKLAILLGATIFLQ

38 HI1693 1 in 4 |ali|phd|phdHtm| 254 9 3 -9.95 32 MKKLTKISTALLIAGLGFSF

39 HI0101 1 in 3 |ali|phd|phdHtm| 146 8 5 -8.06 123 MKLTPEMLTGKSREHLVNLP

40 HI0119 1 in 3 |ali|phd|phdHtm| 337 8 2 -8.50 38 MKKLLKISAISAALLSAPMM

41 HI0838 1 in 3 |ali|phd|phdHtm| 189 9 4 -11.68 74 MGSYDRYPNHQRLTTKFKRS

42 HI1672 1 in 3 |ali|phd|phdHtm| 881 9 1 -10.75 46 MTEKNNSSSIEEKYQERTAN

43 HI1687 1 in 3 |ali|phd|phdHtm| 207 9 5 -13.51 30 MGTVKITSRYGILLGFIALL

44 HI1714 1 in 3 |ali|phd|phdHtm| 346 6 2 -6.64 138 MAKRKLTQNQTRRIQSNNAK

45 HI1372 1 in 2 |ali|phd|phdHtm| 475 9 1 -38.67 33 MRSIQKKIFKIRKKSCIIFP

46 HI1666 1 in 2 |ali|phd|phdHtm| 127 8 6 -8.65 33 MNYVDQNKRKWLSLGGIALG

47 HI0040 1 in 1 |ali|phd|phdHtm| 258 2 3 -2.00 86 MDMANWQNYRSTVNGMPAVF

48 HI0367 1 in 1 |ali|phd|phdHtm| 303 9 3 -16.00 127 MNPTTEQVLSPGEIFRQTRE

49 HI0930 1 in 1 |ali|phd|phdHtm| 206 4 3 -4.00 141 MARRKNHSIKIENNEKENQI

50 HI1141 1 in 1 |ali|phd|phdHtm| 254 9 4 -12.07 45 MNILKRKTPQNIRFGEQKPK

51 HI1150 1 in 1 |ali|phd|phdHtm| 209 9 4 -15.00 28 MIEIKMNIRWNVILGVIALC

52 HI1254 1 in 1 |ali|phd|phdHtm| 353 6 2 -6.18 72 MPSRQLQILIRKTLPLVPDH

53 HI0161 1 out 115 |ali|phd|phdHtm| 456 3 1 3.80 193 MTKHYDYIAIGGGSGGIASL

54 HI1210 1 out 64 |ali|phd|phdHtm| 311 5 3 5.16 129 MKVAVLGAAGGIGQALALLL

55 HI1197 1 out 36 |ali|phd|phdHtm| 293 6 4 6.80 96 MAILIDKNTKVICQGFTGGQ

56 HI0714 1 out 34 |ali|phd|phdHtm| 193 9 5 9.36 106 MSVIPMVVEQTSRGERSYDI

57 HI0156 1 out 29 |ali|phd|phdHtm| 312 3 2 3.88 110 MKKFAMVFPGQGSQTVGMLA

58 HI0307 1 out 20 |ali|phd|phdHtm| 271 3 2 3.72 187 MQHKLIAFIGGGNMAQAIIL

59 HI1061 1 out 14 |ali|phd|phdHtm| 262 1 3 2.00 170 MIHPSAKIHPTALIEEGAVI

60 HI1136 1 out 12 |ali|phd|phdHtm| 437 5 1 5.92 289 MNAYQNKNITIIGLGKTGLS

61 HI1448 1 out 12 |ali|phd|phdHtm| 404 6 2 6.12 308 MLTLDQARSKMLEQLPFPTQ

62 HI1445 1 out 10 |ali|phd|phdHtm| 242 5 4 5.84 168 MSSFFVAGTDTNVGKTTAAR

63 HI1654 1 out 8 |ali|phd|phdHtm| 283 9 3 15.64 130 MTDLTGILYIVATPIGNLQD

64 HI0415 1 out 6 |ali|phd|phdHtm| 265 0 3 0.64 207 MLMQSIYLSKIREQNPLIHN

65 HI0241 1 out 4 |ali|phd|phdHtm| 97 9 9 27.20 25 MEAQSPMSTLFIFVIFGLIF

66 HI0645 1 out 4 |ali|phd|phdHtm| 313 4 3 4.80 166 MIREPYFHQFALAELLPFFE

67 HI0807 1 out 4 |ali|phd|phdHtm| 397 9 2 11.00 117 MQKQNIVILGSTGSIGKSTL

68 HI0094 1 out 3 |ali|phd|phdHtm| 106 9 9 16.00 98 MSELLINDYTRKGFVDGLCL

69 HI0245 1 out 3 |ali|phd|phdHtm| 363 9 2 9.34 325 MRVSDFNFDLPDELIARYPK

70 HI0631 1 out 3 |ali|phd|phdHtm| 311 1 2 1.00 102 MEFSTQQTPFLSFNREQWAE

71 HI1052 1 out 3 |ali|phd|phdHtm| 298 0 2 0.32 180 MDYLDKLTHLAQVRGEINIR

72 HI0009 1 out 2 |ali|phd|phdHtm| 302 1 2 1.32 164 MSIKILSESEIKQVANSYQA

73 HI0787 1 out 2 |ali|phd|phdHtm| 201 9 5 17.44 150 MKYILIHDLPYQEEEIGITE

74 HI1048 1 out 2 |ali|phd|phdHtm| 369 4 2 4.00 233 MKKLIAVAVLSACGSLAHAN

75 HI1414 1 unk 2 |ali|phd|phdHtm| 91 0 9 0.00 21 MTKYIYIALVGVVVVLFGAL

76 HI0193 1 unk 1 |ali|phd|phdHtm| 287 0 3 0.00 18 MIFIFISLFAKIFFNYNDFF

77 HI0388 1 out 1 |ali|phd|phdHtm| 236 2 5 2.00 98 MQNLTLLALDTSTEACSVAL

78 HI1511 1 out 1 |ali|phd|phdHtm| 487 4 2 4.00 309 MSISFNNIPSALRVPLTYIE

79 HI1681 1 out 1 |ali|phd|phdHtm| 221 9 3 10.89 174 MKLRAVVLGLATLCTSTATF

80 HI1699 1 out 1 |ali|phd|phdHtm| 304 3 3 3.77 270 MNLMLCCTPLQVLIARKIIE

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
19	HI1231	1	in	83	\|ali\|phd\|phdHtm\|	478	1	1	-1.76	196	MSKEIKTQVVVLGAGPAGYS
20	HI0905	1	in	70	\|ali\|phd\|phdHtm\|	283	5	2	-5.76	204	MKQYLELCRRIVSEGEWVAN
21	HI1645	1	in	58	\|ali\|phd\|phdHtm\|	333	1	2	-1.88	175	MKTLSEFIVERQAEYPNAKG
22	HI0086	1	in	47	\|ali\|phd\|phdHtm\|	381	4	2	-4.12	102	MRSIFSLFLEDVMTQQYAID
23	HI1428	1	in	23	\|ali\|phd\|phdHtm\|	212	0	3	-0.64	99	MKKIAVLISGQGTNLQTIID
24	HI0440	1	in	22	\|ali\|phd\|phdHtm\|	864	9	0	-12.38	28	MRIAKLILNTLLTLCILGLV
25	HI1356	1	in	16	\|ali\|phd\|phdHtm\|	699	5	1	-5.40	81	MVSMQISDSLKQKAEKCGIA
26	HI0208	1	in	13	\|ali\|phd\|phdHtm\|	362	6	2	-6.20	124	MLCVNVELQERRYPILIGSG
27	HI0087	1	in	12	\|ali\|phd\|phdHtm\|	425	3	2	-3.32	226	MNLYNIKHPEEQVTFSQAVR
28	HI0037	1	in	11	\|ali\|phd\|phdHtm\|	378	3	2	-3.83	36	MQFFVCLTKSFSTFCQTKLT
29	HI0122	1	in	11	\|ali\|phd\|phdHtm\|	396	1	2	-1.80	99	MQTKYDLSTMFIHSGRQKRF
30	HI0915	1	in	11	\|ali\|phd\|phdHtm\|	341	1	2	-1.96	268	MQKSYSLQELATQIGATVRG
31	HI0021	1	in	7	\|ali\|phd\|phdHtm\|	416	2	1	-2.04	244	MGGVKKNALLDYVFTKALEN
32	HI0629	1	in	6	\|ali\|phd\|phdHtm\|	195	9	5	-12.88	117	MQKEQLSAYMDGEQVETDLI
33	HI1695	1	in	6	\|ali\|phd\|phdHtm\|	267	0	3	-0.92	252	MKFSVLMSLYIKENPQFLRE
34	HI0194	1	in	5	\|ali\|phd\|phdHtm\|	452	8	1	-8.30	77	MYPWQDFAIQPDFSDKIALR
35	HI0220_1	1	in	5	\|ali\|phd\|phdHtm\|	302	3	3	-3.04	151	MMNFTLLTYLADCQPKVRSE
36	HI1558	1	in	4	\|ali\|phd\|phdHtm\|	267	4	4	-4.88	118	MKYYRRALYDKFVHFYLVIS
37	HI1658	1	in	4	\|ali\|phd\|phdHtm\|	193	5	3	-5.63	31	MTLSPLKKLAILLGATIFLQ
38	HI1693	1	in	4	\|ali\|phd\|phdHtm\|	254	9	3	-9.95	32	MKKLTKISTALLIAGLGFSF
39	HI0101	1	in	3	\|ali\|phd\|phdHtm\|	146	8	5	-8.06	123	MKLTPEMLTGKSREHLVNLP
40	HI0119	1	in	3	\|ali\|phd\|phdHtm\|	337	8	2	-8.50	38	MKKLLKISAISAALLSAPMM
41	HI0838	1	in	3	\|ali\|phd\|phdHtm\|	189	9	4	-11.68	74	MGSYDRYPNHQRLTTKFKRS
42	HI1672	1	in	3	\|ali\|phd\|phdHtm\|	881	9	1	-10.75	46	MTEKNNSSSIEEKYQERTAN
43	HI1687	1	in	3	\|ali\|phd\|phdHtm\|	207	9	5	-13.51	30	MGTVKITSRYGILLGFIALL
44	HI1714	1	in	3	\|ali\|phd\|phdHtm\|	346	6	2	-6.64	138	MAKRKLTQNQTRRIQSNNAK
45	HI1372	1	in	2	\|ali\|phd\|phdHtm\|	475	9	1	-38.67	33	MRSIQKKIFKIRKKSCIIFP
46	HI1666	1	in	2	\|ali\|phd\|phdHtm\|	127	8	6	-8.65	33	MNYVDQNKRKWLSLGGIALG
47	HI0040	1	in	1	\|ali\|phd\|phdHtm\|	258	2	3	-2.00	86	MDMANWQNYRSTVNGMPAVF
48	HI0367	1	in	1	\|ali\|phd\|phdHtm\|	303	9	3	-16.00	127	MNPTTEQVLSPGEIFRQTRE
49	HI0930	1	in	1	\|ali\|phd\|phdHtm\|	206	4	3	-4.00	141	MARRKNHSIKIENNEKENQI
50	HI1141	1	in	1	\|ali\|phd\|phdHtm\|	254	9	4	-12.07	45	MNILKRKTPQNIRFGEQKPK
51	HI1150	1	in	1	\|ali\|phd\|phdHtm\|	209	9	4	-15.00	28	MIEIKMNIRWNVILGVIALC
52	HI1254	1	in	1	\|ali\|phd\|phdHtm\|	353	6	2	-6.18	72	MPSRQLQILIRKTLPLVPDH
53	HI0161	1	out	115	\|ali\|phd\|phdHtm\|	456	3	1	3.80	193	MTKHYDYIAIGGGSGGIASL
54	HI1210	1	out	64	\|ali\|phd\|phdHtm\|	311	5	3	5.16	129	MKVAVLGAAGGIGQALALLL
55	HI1197	1	out	36	\|ali\|phd\|phdHtm\|	293	6	4	6.80	96	MAILIDKNTKVICQGFTGGQ
56	HI0714	1	out	34	\|ali\|phd\|phdHtm\|	193	9	5	9.36	106	MSVIPMVVEQTSRGERSYDI
57	HI0156	1	out	29	\|ali\|phd\|phdHtm\|	312	3	2	3.88	110	MKKFAMVFPGQGSQTVGMLA
58	HI0307	1	out	20	\|ali\|phd\|phdHtm\|	271	3	2	3.72	187	MQHKLIAFIGGGNMAQAIIL
59	HI1061	1	out	14	\|ali\|phd\|phdHtm\|	262	1	3	2.00	170	MIHPSAKIHPTALIEEGAVI
60	HI1136	1	out	12	\|ali\|phd\|phdHtm\|	437	5	1	5.92	289	MNAYQNKNITIIGLGKTGLS
61	HI1448	1	out	12	\|ali\|phd\|phdHtm\|	404	6	2	6.12	308	MLTLDQARSKMLEQLPFPTQ
62	HI1445	1	out	10	\|ali\|phd\|phdHtm\|	242	5	4	5.84	168	MSSFFVAGTDTNVGKTTAAR
63	HI1654	1	out	8	\|ali\|phd\|phdHtm\|	283	9	3	15.64	130	MTDLTGILYIVATPIGNLQD
64	HI0415	1	out	6	\|ali\|phd\|phdHtm\|	265	0	3	0.64	207	MLMQSIYLSKIREQNPLIHN
65	HI0241	1	out	4	\|ali\|phd\|phdHtm\|	97	9	9	27.20	25	MEAQSPMSTLFIFVIFGLIF
66	HI0645	1	out	4	\|ali\|phd\|phdHtm\|	313	4	3	4.80	166	MIREPYFHQFALAELLPFFE
67	HI0807	1	out	4	\|ali\|phd\|phdHtm\|	397	9	2	11.00	117	MQKQNIVILGSTGSIGKSTL
68	HI0094	1	out	3	\|ali\|phd\|phdHtm\|	106	9	9	16.00	98	MSELLINDYTRKGFVDGLCL
69	HI0245	1	out	3	\|ali\|phd\|phdHtm\|	363	9	2	9.34	325	MRVSDFNFDLPDELIARYPK
70	HI0631	1	out	3	\|ali\|phd\|phdHtm\|	311	1	2	1.00	102	MEFSTQQTPFLSFNREQWAE
71	HI1052	1	out	3	\|ali\|phd\|phdHtm\|	298	0	2	0.32	180	MDYLDKLTHLAQVRGEINIR
72	HI0009	1	out	2	\|ali\|phd\|phdHtm\|	302	1	2	1.32	164	MSIKILSESEIKQVANSYQA
73	HI0787	1	out	2	\|ali\|phd\|phdHtm\|	201	9	5	17.44	150	MKYILIHDLPYQEEEIGITE
74	HI1048	1	out	2	\|ali\|phd\|phdHtm\|	369	4	2	4.00	233	MKKLIAVAVLSACGSLAHAN
75	HI1414	1	unk	2	\|ali\|phd\|phdHtm\|	91	0	9	0.00	21	MTKYIYIALVGVVVVLFGAL
76	HI0193	1	unk	1	\|ali\|phd\|phdHtm\|	287	0	3	0.00	18	MIFIFISLFAKIFFNYNDFF
77	HI0388	1	out	1	\|ali\|phd\|phdHtm\|	236	2	5	2.00	98	MQNLTLLALDTSTEACSVAL
78	HI1511	1	out	1	\|ali\|phd\|phdHtm\|	487	4	2	4.00	309	MSISFNNIPSALRVPLTYIE
79	HI1681	1	out	1	\|ali\|phd\|phdHtm\|	221	9	3	10.89	174	MKLRAVVLGLATLCTSTATF
80	HI1699	1	out	1	\|ali\|phd\|phdHtm\|	304	3	3	3.77	270	MNLMLCCTPLQVLIARKIIE

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